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Contributing Nextflow to APSIM (HPC) #7

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JBris opened this issue Aug 19, 2024 · 1 comment
Open

Contributing Nextflow to APSIM (HPC) #7

JBris opened this issue Aug 19, 2024 · 1 comment

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@JBris
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JBris commented Aug 19, 2024 •
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Ranked by time/complexity:

  1. Batch script for running lots of APSIM simulations
  2. Combining multiple SQLite databases into one
  3. How to create large number of config files? (unsure on how to tackle this one)

Two use cases. Linux module for APSIM. Otherwise, Singularity Image Format (sif) file

@JBris to add some documentation. MD file?

TODO discuss with @sno036
@JBris
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JBris commented Aug 19, 2024 •
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@JBris @sno036 @Ollehar

  • Singularity/Apptainer files go in subdirectory
  • Nextflow scripts in subdir. Documentation for NF
  • If Snakemake support should be added, just create a subdir for it. Documentation for Snakemake
  • bin directory for Python/R scripts (????)

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