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<title>Data Analysis: Eucalyptus pellita Progeny Test</title>
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<body class="fullcontent">
<div id="quarto-content" class="page-columns page-rows-contents page-layout-article">
<main class="content" id="quarto-document-content">
<header id="title-block-header" class="quarto-title-block default">
<div class="quarto-title">
<h1 class="title">Data Analysis: Eucalyptus pellita Progeny Test</h1>
</div>
<div class="quarto-title-meta">
<div>
<div class="quarto-title-meta-heading">Author</div>
<div class="quarto-title-meta-contents">
<p>Araujo, MJ </p>
</div>
</div>
</div>
</header>
<section id="analysis-of-the-progenie-test" class="level1">
<h1>Analysis of the progenie test</h1>
<p>Original dataset avaiable at: <a href="https://ipef-my.sharepoint.com/:x:/r/personal/marcio_ipef_onmicrosoft_com/_layouts/15/Doc.aspx?sourcedoc=%7B5CFBC9A3-89EF-4A22-9F20-3AF9DE1E4F0B%7D&file=BSPT.187.19-F322.xlsx&action=default&mobileredirect=true">BSPT.187.19-F322.xlsx</a></p>
<section id="diagnostic-analysis" class="level2">
<h2 class="anchored" data-anchor-id="diagnostic-analysis">1. Diagnostic analysis</h2>
<section id="load-packages" class="level3">
<h3 class="anchored" data-anchor-id="load-packages">1.1. Load packages</h3>
<div class="cell">
<div class="sourceCode cell-code" id="cb1"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="fu">library</span>(tidyverse)</span>
<span id="cb1-2"><a href="#cb1-2" aria-hidden="true" tabindex="-1"></a><span class="fu">library</span>(openxlsx)</span>
<span id="cb1-3"><a href="#cb1-3" aria-hidden="true" tabindex="-1"></a><span class="fu">library</span>(breedR)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section>
<section id="load-dataset" class="level3">
<h3 class="anchored" data-anchor-id="load-dataset">1.2. Load dataset</h3>
<div class="cell">
<div class="sourceCode cell-code" id="cb2"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb2-1"><a href="#cb2-1" aria-hidden="true" tabindex="-1"></a>Data <span class="ot"><-</span> <span class="fu">read.xlsx</span>(<span class="st">"DataPellitaBracell.xlsx"</span>, <span class="at">sheet =</span> <span class="st">"Progenie"</span>) <span class="sc">|></span></span>
<span id="cb2-2"><a href="#cb2-2" aria-hidden="true" tabindex="-1"></a> <span class="co"># Excluding Tratamento = 1</span></span>
<span id="cb2-3"><a href="#cb2-3" aria-hidden="true" tabindex="-1"></a> <span class="fu">filter</span>(<span class="fu">is.na</span>(Tratamento))</span>
<span id="cb2-4"><a href="#cb2-4" aria-hidden="true" tabindex="-1"></a>knitr<span class="sc">::</span><span class="fu">kable</span>(<span class="fu">head</span>(Data, <span class="dv">10</span>))</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output-display">
<table class="table table-sm table-striped">
<colgroup>
<col style="width: 2%">
<col style="width: 4%">
<col style="width: 4%">
<col style="width: 13%">
<col style="width: 4%">
<col style="width: 1%">
<col style="width: 3%">
<col style="width: 5%">
<col style="width: 5%">
<col style="width: 5%">
<col style="width: 5%">
<col style="width: 2%">
<col style="width: 4%">
<col style="width: 2%">
<col style="width: 4%">
<col style="width: 3%">
<col style="width: 3%">
<col style="width: 2%">
<col style="width: 4%">
<col style="width: 2%">
<col style="width: 4%">
<col style="width: 3%">
<col style="width: 3%">
</colgroup>
<thead>
<tr class="header">
<th style="text-align: right;">Bloco</th>
<th style="text-align: right;">Tratamento</th>
<th style="text-align: left;">Genotipo</th>
<th style="text-align: left;">Procedencia</th>
<th style="text-align: left;">especie_id</th>
<th style="text-align: right;">Arv</th>
<th style="text-align: left;">CONCAT.</th>
<th style="text-align: left;">COD.1_fito1</th>
<th style="text-align: left;">COD.2_fito1</th>
<th style="text-align: left;">COD.1_fito2</th>
<th style="text-align: left;">COD.1_fito3</th>
<th style="text-align: right;">CAP.1</th>
<th style="text-align: right;">DAP.1</th>
<th style="text-align: right;">Alt.1</th>
<th style="text-align: right;">Vol.1</th>
<th style="text-align: left;">COD.1_1</th>
<th style="text-align: left;">COD.2_1</th>
<th style="text-align: right;">CAP.3</th>
<th style="text-align: right;">DAP.3</th>
<th style="text-align: right;">Alt.3</th>
<th style="text-align: right;">Vol.3</th>
<th style="text-align: left;">COD.1_2</th>
<th style="text-align: left;">COD.2_2</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td style="text-align: right;">1</td>
<td style="text-align: right;">NA</td>
<td style="text-align: left;">11</td>
<td style="text-align: left;">E. Pellita (t19b 102) - IPEF</td>
<td style="text-align: left;">E. pellita</td>
<td style="text-align: right;">1</td>
<td style="text-align: left;">1–11-1</td>
<td style="text-align: left;">NA</td>
<td style="text-align: left;">NA</td>
<td style="text-align: left;">NA</td>
<td style="text-align: left;">NA</td>
<td style="text-align: right;">20.5</td>
<td style="text-align: right;">6.525353</td>
<td style="text-align: right;">7.0</td>
<td style="text-align: right;">0.0098321</td>
<td style="text-align: left;">NA</td>
<td style="text-align: left;">NA</td>
<td style="text-align: right;">36.6</td>
<td style="text-align: right;">11.650142</td>
<td style="text-align: right;">12.0</td>
<td style="text-align: right;">0.0537258</td>
<td style="text-align: left;">NA</td>
<td style="text-align: left;">NA</td>
</tr>
<tr class="even">
<td style="text-align: right;">1</td>
<td style="text-align: right;">NA</td>
<td style="text-align: left;">11</td>
<td style="text-align: left;">E. Pellita (t19b 102) - IPEF</td>
<td style="text-align: left;">E. pellita</td>
<td style="text-align: right;">2</td>
<td style="text-align: left;">1–11-2</td>
<td style="text-align: left;">NA</td>
<td style="text-align: left;">NA</td>
<td style="text-align: left;">X</td>
<td style="text-align: left;">NA</td>
<td style="text-align: right;">13.5</td>
<td style="text-align: right;">4.297184</td>
<td style="text-align: right;">2.5</td>
<td style="text-align: right;">0.0015228</td>
<td style="text-align: left;">Q</td>
<td style="text-align: left;">NA</td>
<td style="text-align: right;">29.0</td>
<td style="text-align: right;">9.230987</td>
<td style="text-align: right;">10.6</td>
<td style="text-align: right;">0.0297949</td>
<td style="text-align: left;">Q</td>
<td style="text-align: left;">NA</td>
</tr>
<tr class="odd">
<td style="text-align: right;">1</td>
<td style="text-align: right;">NA</td>
<td style="text-align: left;">11</td>
<td style="text-align: left;">E. Pellita (t19b 102) - IPEF</td>
<td style="text-align: left;">E. pellita</td>
<td style="text-align: right;">3</td>
<td style="text-align: left;">1–11-3</td>
<td style="text-align: left;">NA</td>
<td style="text-align: left;">NA</td>
<td style="text-align: left;">X</td>
<td style="text-align: left;">NA</td>
<td style="text-align: right;">19.0</td>
<td style="text-align: right;">6.047888</td>
<td style="text-align: right;">6.8</td>
<td style="text-align: right;">0.0082046</td>
<td style="text-align: left;">NA</td>
<td style="text-align: left;">NA</td>
<td style="text-align: right;">32.4</td>
<td style="text-align: right;">10.313240</td>
<td style="text-align: right;">10.6</td>
<td style="text-align: right;">0.0371908</td>
<td style="text-align: left;">NA</td>
<td style="text-align: left;">NA</td>
</tr>
<tr class="even">
<td style="text-align: right;">1</td>
<td style="text-align: right;">NA</td>
<td style="text-align: left;">11</td>
<td style="text-align: left;">E. Pellita (t19b 102) - IPEF</td>
<td style="text-align: left;">E. pellita</td>
<td style="text-align: right;">4</td>
<td style="text-align: left;">1–11-4</td>
<td style="text-align: left;">NA</td>
<td style="text-align: left;">NA</td>
<td style="text-align: left;">X</td>
<td style="text-align: left;">NA</td>
<td style="text-align: right;">18.5</td>
<td style="text-align: right;">5.888733</td>
<td style="text-align: right;">6.8</td>
<td style="text-align: right;">0.0077784</td>
<td style="text-align: left;">NA</td>
<td style="text-align: left;">NA</td>
<td style="text-align: right;">32.5</td>
<td style="text-align: right;">10.345071</td>
<td style="text-align: right;">11.4</td>
<td style="text-align: right;">0.0402449</td>
<td style="text-align: left;">NA</td>
<td style="text-align: left;">NA</td>
</tr>
<tr class="odd">
<td style="text-align: right;">1</td>
<td style="text-align: right;">NA</td>
<td style="text-align: left;">11</td>
<td style="text-align: left;">E. Pellita (t19b 102) - IPEF</td>
<td style="text-align: left;">E. pellita</td>
<td style="text-align: right;">5</td>
<td style="text-align: left;">1–11-5</td>
<td style="text-align: left;">NA</td>
<td style="text-align: left;">NA</td>
<td style="text-align: left;">X</td>
<td style="text-align: left;">NA</td>
<td style="text-align: right;">24.0</td>
<td style="text-align: right;">7.639437</td>
<td style="text-align: right;">5.5</td>
<td style="text-align: right;">0.0105883</td>
<td style="text-align: left;">Q</td>
<td style="text-align: left;">NA</td>
<td style="text-align: right;">39.5</td>
<td style="text-align: right;">12.573241</td>
<td style="text-align: right;">12.1</td>
<td style="text-align: right;">0.0630985</td>
<td style="text-align: left;">Q</td>
<td style="text-align: left;">NA</td>
</tr>
<tr class="even">
<td style="text-align: right;">1</td>
<td style="text-align: right;">NA</td>
<td style="text-align: left;">14</td>
<td style="text-align: left;">E. Pellita (t19b 102) - IPEF</td>
<td style="text-align: left;">E. pellita</td>
<td style="text-align: right;">1</td>
<td style="text-align: left;">1–14-1</td>
<td style="text-align: left;">NA</td>
<td style="text-align: left;">NA</td>
<td style="text-align: left;">X</td>
<td style="text-align: left;">NA</td>
<td style="text-align: right;">16.0</td>
<td style="text-align: right;">5.092958</td>
<td style="text-align: right;">5.7</td>
<td style="text-align: right;">0.0048770</td>
<td style="text-align: left;">Q</td>
<td style="text-align: left;">NA</td>
<td style="text-align: right;">25.0</td>
<td style="text-align: right;">7.957747</td>
<td style="text-align: right;">9.2</td>
<td style="text-align: right;">0.0192180</td>
<td style="text-align: left;">Q</td>
<td style="text-align: left;">NA</td>
</tr>
<tr class="odd">
<td style="text-align: right;">1</td>
<td style="text-align: right;">NA</td>
<td style="text-align: left;">14</td>
<td style="text-align: left;">E. Pellita (t19b 102) - IPEF</td>
<td style="text-align: left;">E. pellita</td>
<td style="text-align: right;">2</td>
<td style="text-align: left;">1–14-2</td>
<td style="text-align: left;">NA</td>
<td style="text-align: left;">NA</td>
<td style="text-align: left;">X</td>
<td style="text-align: left;">NA</td>
<td style="text-align: right;">19.0</td>
<td style="text-align: right;">6.047888</td>
<td style="text-align: right;">6.8</td>
<td style="text-align: right;">0.0082046</td>
<td style="text-align: left;">NA</td>
<td style="text-align: left;">NA</td>
<td style="text-align: right;">25.2</td>
<td style="text-align: right;">8.021409</td>
<td style="text-align: right;">10.1</td>
<td style="text-align: right;">0.0214369</td>
<td style="text-align: left;">NA</td>
<td style="text-align: left;">NA</td>
</tr>
<tr class="even">
<td style="text-align: right;">1</td>
<td style="text-align: right;">NA</td>
<td style="text-align: left;">14</td>
<td style="text-align: left;">E. Pellita (t19b 102) - IPEF</td>
<td style="text-align: left;">E. pellita</td>
<td style="text-align: right;">3</td>
<td style="text-align: left;">1–14-3</td>
<td style="text-align: left;">NA</td>
<td style="text-align: left;">NA</td>
<td style="text-align: left;">X</td>
<td style="text-align: left;">NA</td>
<td style="text-align: right;">21.0</td>
<td style="text-align: right;">6.684508</td>
<td style="text-align: right;">5.7</td>
<td style="text-align: right;">0.0084014</td>
<td style="text-align: left;">Q</td>
<td style="text-align: left;">NA</td>
<td style="text-align: right;">35.0</td>
<td style="text-align: right;">11.140846</td>
<td style="text-align: right;">11.3</td>
<td style="text-align: right;">0.0462651</td>
<td style="text-align: left;">Q</td>
<td style="text-align: left;">NA</td>
</tr>
<tr class="odd">
<td style="text-align: right;">1</td>
<td style="text-align: right;">NA</td>
<td style="text-align: left;">14</td>
<td style="text-align: left;">E. Pellita (t19b 102) - IPEF</td>
<td style="text-align: left;">E. pellita</td>
<td style="text-align: right;">4</td>
<td style="text-align: left;">1–14-4</td>
<td style="text-align: left;">NA</td>
<td style="text-align: left;">NA</td>
<td style="text-align: left;">NA</td>
<td style="text-align: left;">NA</td>
<td style="text-align: right;">23.0</td>
<td style="text-align: right;">7.321127</td>
<td style="text-align: right;">7.8</td>
<td style="text-align: right;">0.0137908</td>
<td style="text-align: left;">NA</td>
<td style="text-align: left;">NA</td>
<td style="text-align: right;">38.2</td>
<td style="text-align: right;">12.159438</td>
<td style="text-align: right;">12.7</td>
<td style="text-align: right;">0.0619398</td>
<td style="text-align: left;">NA</td>
<td style="text-align: left;">NA</td>
</tr>
<tr class="even">
<td style="text-align: right;">1</td>
<td style="text-align: right;">NA</td>
<td style="text-align: left;">14</td>
<td style="text-align: left;">E. Pellita (t19b 102) - IPEF</td>
<td style="text-align: left;">E. pellita</td>
<td style="text-align: right;">5</td>
<td style="text-align: left;">1–14-5</td>
<td style="text-align: left;">NA</td>
<td style="text-align: left;">NA</td>
<td style="text-align: left;">NA</td>
<td style="text-align: left;">NA</td>
<td style="text-align: right;">21.0</td>
<td style="text-align: right;">6.684508</td>
<td style="text-align: right;">7.0</td>
<td style="text-align: right;">0.0103175</td>
<td style="text-align: left;">NA</td>
<td style="text-align: left;">NA</td>
<td style="text-align: right;">30.0</td>
<td style="text-align: right;">9.549297</td>
<td style="text-align: right;">10.9</td>
<td style="text-align: right;">0.0327875</td>
<td style="text-align: left;">B</td>
<td style="text-align: left;">NA</td>
</tr>
</tbody>
</table>
</div>
</div>
</section>
<section id="load-functions" class="level3">
<h3 class="anchored" data-anchor-id="load-functions">1.3. Load functions</h3>
<div class="cell">
<div class="sourceCode cell-code" id="cb3"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb3-1"><a href="#cb3-1" aria-hidden="true" tabindex="-1"></a><span class="fu">source</span>(</span>
<span id="cb3-2"><a href="#cb3-2" aria-hidden="true" tabindex="-1"></a> <span class="st">"Functions_mja_2022_v1.R"</span></span>
<span id="cb3-3"><a href="#cb3-3" aria-hidden="true" tabindex="-1"></a>)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section>
<section id="performing-diagnostic-analysis-using-diagfunc-function-a-personal-function" class="level3">
<h3 class="anchored" data-anchor-id="performing-diagnostic-analysis-using-diagfunc-function-a-personal-function">1.4. Performing Diagnostic Analysis: Using <code>DiagFunc</code> function, a personal function</h3>
<section id="dap" class="level4">
<h4 class="anchored" data-anchor-id="dap"><strong><em>DAP:</em></strong></h4>
<div class="cell">
<div class="sourceCode cell-code" id="cb4"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb4-1"><a href="#cb4-1" aria-hidden="true" tabindex="-1"></a><span class="co"># names(Data)</span></span>
<span id="cb4-2"><a href="#cb4-2" aria-hidden="true" tabindex="-1"></a>DiagDAP <span class="ot"><-</span></span>
<span id="cb4-3"><a href="#cb4-3" aria-hidden="true" tabindex="-1"></a> <span class="fu">DiagFunc</span>(</span>
<span id="cb4-4"><a href="#cb4-4" aria-hidden="true" tabindex="-1"></a> <span class="at">Rep =</span> <span class="st">"Bloco"</span>,</span>
<span id="cb4-5"><a href="#cb4-5" aria-hidden="true" tabindex="-1"></a> <span class="at">Trait =</span> <span class="st">"DAP.3"</span>,</span>
<span id="cb4-6"><a href="#cb4-6" aria-hidden="true" tabindex="-1"></a> <span class="at">Trat =</span> <span class="st">"Genotipo"</span>,</span>
<span id="cb4-7"><a href="#cb4-7" aria-hidden="true" tabindex="-1"></a> <span class="at">data1 =</span> Data,</span>
<span id="cb4-8"><a href="#cb4-8" aria-hidden="true" tabindex="-1"></a> <span class="at">Exp =</span> <span class="cn">NULL</span>,</span>
<span id="cb4-9"><a href="#cb4-9" aria-hidden="true" tabindex="-1"></a> <span class="at">plot_diag1 =</span> T,</span>
<span id="cb4-10"><a href="#cb4-10" aria-hidden="true" tabindex="-1"></a> <span class="at">plot_diag2 =</span> T,</span>
<span id="cb4-11"><a href="#cb4-11" aria-hidden="true" tabindex="-1"></a> <span class="at">nDiag =</span> <span class="dv">2</span>,</span>
<span id="cb4-12"><a href="#cb4-12" aria-hidden="true" tabindex="-1"></a> <span class="at">verbose =</span> T,</span>
<span id="cb4-13"><a href="#cb4-13" aria-hidden="true" tabindex="-1"></a> <span class="at">ColumnNames_To_Return =</span> <span class="fu">c</span>(</span>
<span id="cb4-14"><a href="#cb4-14" aria-hidden="true" tabindex="-1"></a> <span class="st">"Bloco"</span>,</span>
<span id="cb4-15"><a href="#cb4-15" aria-hidden="true" tabindex="-1"></a> <span class="st">"Genotipo"</span>,</span>
<span id="cb4-16"><a href="#cb4-16" aria-hidden="true" tabindex="-1"></a> <span class="st">"Procedencia"</span>,</span>
<span id="cb4-17"><a href="#cb4-17" aria-hidden="true" tabindex="-1"></a> <span class="st">"especie_id"</span>,</span>
<span id="cb4-18"><a href="#cb4-18" aria-hidden="true" tabindex="-1"></a> <span class="st">"Arv"</span>,</span>
<span id="cb4-19"><a href="#cb4-19" aria-hidden="true" tabindex="-1"></a> <span class="st">"CONCAT."</span>,</span>
<span id="cb4-20"><a href="#cb4-20" aria-hidden="true" tabindex="-1"></a> <span class="st">"DAP.1"</span>,</span>
<span id="cb4-21"><a href="#cb4-21" aria-hidden="true" tabindex="-1"></a> <span class="st">"Alt.1"</span>,</span>
<span id="cb4-22"><a href="#cb4-22" aria-hidden="true" tabindex="-1"></a> <span class="st">"Vol.1"</span></span>
<span id="cb4-23"><a href="#cb4-23" aria-hidden="true" tabindex="-1"></a> )</span>
<span id="cb4-24"><a href="#cb4-24" aria-hidden="true" tabindex="-1"></a> )</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-stdout">
<pre><code>
Transformation to Exp1: lambda = 1.4</code></pre>
</div>
<div class="cell-output-display">
<p><img src="ProgTest_E.pellita_files/figure-html/DiagFunc%20DAP-1.png" class="img-fluid" width="672"></p>
</div>
<div class="cell-output-display">
<p><img src="ProgTest_E.pellita_files/figure-html/DiagFunc%20DAP-2.png" class="img-fluid" width="672"></p>
</div>
<div class="cell-output-display">
<p><img src="ProgTest_E.pellita_files/figure-html/DiagFunc%20DAP-3.png" class="img-fluid" width="672"></p>
</div>
<div class="cell-output-display">
<p><img src="ProgTest_E.pellita_files/figure-html/DiagFunc%20DAP-4.png" class="img-fluid" width="672"></p>
</div>
<div class="cell-output-display">
<p><img src="ProgTest_E.pellita_files/figure-html/DiagFunc%20DAP-5.png" class="img-fluid" width="672"></p>
</div>
<div class="cell-output-display">
<p><img src="ProgTest_E.pellita_files/figure-html/DiagFunc%20DAP-6.png" class="img-fluid" width="672"></p>
</div>
<div class="cell-output-display">
<p><img src="ProgTest_E.pellita_files/figure-html/DiagFunc%20DAP-7.png" class="img-fluid" width="672"></p>
</div>
<div class="cell-output-display">
<p><img src="ProgTest_E.pellita_files/figure-html/DiagFunc%20DAP-8.png" class="img-fluid" width="672"></p>
</div>
<div class="cell-output cell-output-stdout">
<pre><code>$Outliers
Bloco Tratamento Genotipo Procedencia
1 2 NA k7091 Helenvale - E. pellita - IPEF
2 2 NA k7094 Helenvale - E. pellita - IPEF
3 3 NA k7155 Creb Track - E. pellita - IPEF
4 4 NA 1 (PxT) E.Pelx E.ter (t06d 105) - IPEF
5 4 NA k2206 PNG Orehard - E. pellita - IPEF
6 4 NA k2212 PNG Orehard - E. pellita - IPEF
7 4 NA k6574 MT Ray - E. pellita - IPEF
8 4 NA k7099 Helenvale - E. pellita - IPEF
9 4 NA k7125 Black Monthain Road - E. pellita - IPEF
10 4 NA k7126 Black Monthain Road - E. pellita - IPEF
11 4 NA k7139 Black Monthain Road - E. pellita - IPEF
12 4 NA k7141 Creb Track - E. pellita - IPEF
13 5 NA 3 (PxR) E.pel x E.res (t 06d 105) - IPEF
14 5 NA 5 (PxT) E.Pelx E.ter (t06d 105) - IPEF
15 5 NA k7109 Helenvale - E. pellita - IPEF
16 5 NA k7126 Black Monthain Road - E. pellita - IPEF
especie_id Arv CONCAT. COD.1_fito1 COD.2_fito1
1 E. pellita 4 2--k7091-4 <NA> <NA>
2 E. pellita 1 2--k7094-1 <NA> <NA>
3 E. pellita 5 3--k7155-5 J <NA>
4 E. pellita x E. tereticornis 1 4--1 (PxT)-1 <NA> <NA>
5 E. pellita 2 4--k2206-2 <NA> <NA>
6 E. pellita 3 4--k2212-3 <NA> <NA>
7 E. pellita 2 4--k6574-2 <NA> <NA>
8 E. pellita 1 4--k7099-1 <NA> <NA>
9 E. pellita 2 4--k7125-2 <NA> <NA>
10 E. pellita 2 4--k7126-2 <NA> <NA>
11 E. pellita 3 4--k7139-3 <NA> <NA>
12 E. pellita 4 4--k7141-4 <NA> <NA>
13 E. pellita x E. resinifera 1 5--3 (PxR)-1 <NA> <NA>
14 E. pellita x E. tereticornis 5 5--5 (PxT)-5 <NA> <NA>
15 E. pellita 3 5--k7109-3 <NA> <NA>
16 E. pellita 2 5--k7126-2 <NA> <NA>
COD.1_fito2 COD.1_fito3 CAP.1 DAP.1 Alt.1 Vol.1 COD.1_1 COD.2_1
1 L <NA> 6.0 1.9098593 2.2 2.647065e-04 <NA> <NA>
2 <NA> <NA> 3.0 0.9549297 1.6 4.812845e-05 <NA> <NA>
3 <NA> <NA> 26.3 8.3715500 8.0 1.849443e-02 <NA> <NA>
4 <NA> <NA> 26.7 8.4988740 7.3 1.739341e-02 <NA> <NA>
5 <NA> <NA> 25.5 8.1169021 7.7 1.673441e-02 <NA> <NA>
6 <NA> <NA> 10.1 3.2149299 3.5 1.193302e-03 <NA> <NA>
7 <NA> <NA> 27.7 8.8171838 7.5 1.923358e-02 <NA> <NA>
8 <NA> <NA> 22.0 7.0028175 6.0 9.705905e-03 <NA> <NA>
9 <NA> <NA> 26.5 8.4352120 7.5 1.760323e-02 <NA> <NA>
10 <NA> <NA> 26.3 8.3715500 8.0 1.849443e-02 <NA> <NA>
11 <NA> <NA> 18.8 5.9842259 6.0 7.087717e-03 <NA> <NA>
12 <NA> <NA> 25.4 8.0850711 6.5 1.401588e-02 <NA> <NA>
13 <NA> <NA> 27.2 8.6580289 9.0 2.225460e-02 <NA> <NA>
14 <NA> <NA> 32.5 10.3450713 8.1 2.859507e-02 <NA> <NA>
15 X <NA> 18.4 5.8569019 6.2 7.015631e-03 B <NA>
16 <NA> <NA> 23.4 7.4484513 7.5 1.372563e-02 <NA> <NA>
CAP.3 DAP.3 Alt.3 Vol.3 COD.1_2 COD.2_2 Experiment TraitT
1 9.5 3.023944 4.0 0.0012065536 B <NA> Exp1 4.707640
2 7.7 2.450986 4.8 0.0009511787 <NA> <NA> Exp1 3.508142
3 53.0 16.870424 15.4 0.1445812204 <NA> <NA> Exp1 52.236780
4 43.9 13.973804 13.9 0.0895330269 <NA> <NA> Exp1 40.127352
5 52.2 16.615776 14.9 0.1356958922 <NA> <NA> Exp1 51.136251
6 15.6 4.965634 5.1 0.0041481915 <NA> <NA> Exp1 9.426807
7 46.0 14.642255 12.2 0.0862809504 <NA> <NA> Exp1 42.840166
8 53.4 16.997748 14.0 0.1334289216 <NA> <NA> Exp1 52.789547
9 51.9 16.520283 15.3 0.1377417426 <NA> <NA> Exp1 50.725283
10 48.8 15.533522 15.2 0.1209825289 <NA> <NA> Exp1 46.534808
11 43.0 13.687325 13.3 0.0821917029 <NA> <NA> Exp1 38.980375
12 50.0 15.915494 14.4 0.1203211370 <NA> <NA> Exp1 48.144667
13 49.4 15.724508 16.3 0.1329477307 <NA> <NA> Exp1 47.337782
14 50.2 15.979156 17.0 0.1431844257 <NA> <NA> Exp1 48.414492
15 46.7 14.865072 13.4 0.0976737779 B <NA> Exp1 43.755617
16 49.8 15.851832 16.6 0.1375961239 <NA> <NA> Exp1 47.875272
$`Normality test before discrepant analylis`
$`Normality test before discrepant analylis`$Exp1
Normality Test for Exp1 after BoxCox transformation
Before removal of discrepant data
[[1]]
Anderson-Darling normality test
data: MOD[[i]]$rs
A = 2.1079, p-value = 2.346e-05
[[2]]
Lilliefors (Kolmogorov-Smirnov) normality test
data: MOD[[i]]$rs
D = 0.020471, p-value = 0.0009142
$`Normality test after discrepant analysis`
$`Normality test after discrepant analysis`$Exp1
Normality test for Exp1 after BoxCox transformation
After removal of discrepant data
[[1]]
Anderson-Darling normality test
data: MOD2[[i]]$rs
A = 2.7063, p-value = 8.125e-07
[[2]]
Lilliefors (Kolmogorov-Smirnov) normality test
data: MOD2[[i]]$rs
D = 0.023719, p-value = 4.444e-05
$`Skewness before discrepant analysis`
$`Skewness before discrepant analysis`$Exp1
Skewness in the data of Exp1 after BoxCox transformation
Before removal of discrepant data
[1] -0.06263614
$`Skewnwss after discrepant analysis`
$`Skewnwss after discrepant analysis`$Exp1
Skewness in the data of Exp1 after BoxCox transformation
After removal of discrepant data
[1] -0.1492578
$`Kurtosis before discrepant analysis`
$`Kurtosis before discrepant analysis`$Exp1
Kurtosis in the data of Exp1 after BoxCox transformation
Before removal of discrepant data
[1] 3.041563
$`Kurtosis after discrepant analysis`
$`Kurtosis after discrepant analysis`$Exp1
Kurtosis in the data of Exp1 após transformação BoxCox
After removal of discrepant data
[1] 2.779427
$`Homocedasticity test before discrepant analysis`
$`Homocedasticity test before discrepant analysis`$Exp1
Levene's Test for Homogeneity of Variance (center = median)
Df F value Pr(>F)
group 169 1.3591 0.00173 **
3636
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
$`Homocedasticity test after discrepant analysis`
$`Homocedasticity test after discrepant analysis`$Exp1
Levene's Test for Homogeneity of Variance (center = median)
Df F value Pr(>F)
group 169 1.3041 0.005902 **
3620
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1</code></pre>
</div>
</div>
</section>
<section id="alt" class="level4">
<h4 class="anchored" data-anchor-id="alt"><strong><em>ALT:</em></strong></h4>
<div class="cell">
<div class="sourceCode cell-code" id="cb7"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb7-1"><a href="#cb7-1" aria-hidden="true" tabindex="-1"></a><span class="co"># names(Data)</span></span>
<span id="cb7-2"><a href="#cb7-2" aria-hidden="true" tabindex="-1"></a>DiagALT <span class="ot"><-</span></span>
<span id="cb7-3"><a href="#cb7-3" aria-hidden="true" tabindex="-1"></a> <span class="fu">DiagFunc</span>(</span>
<span id="cb7-4"><a href="#cb7-4" aria-hidden="true" tabindex="-1"></a> <span class="at">Rep =</span> <span class="st">"Bloco"</span>,</span>
<span id="cb7-5"><a href="#cb7-5" aria-hidden="true" tabindex="-1"></a> <span class="at">Trait =</span> <span class="st">"Alt.3"</span>,</span>
<span id="cb7-6"><a href="#cb7-6" aria-hidden="true" tabindex="-1"></a> <span class="at">Trat =</span> <span class="st">"Genotipo"</span>,</span>
<span id="cb7-7"><a href="#cb7-7" aria-hidden="true" tabindex="-1"></a> <span class="at">data1 =</span> Data,</span>
<span id="cb7-8"><a href="#cb7-8" aria-hidden="true" tabindex="-1"></a> <span class="at">Exp =</span> <span class="cn">NULL</span>,</span>
<span id="cb7-9"><a href="#cb7-9" aria-hidden="true" tabindex="-1"></a> <span class="at">plot_diag1 =</span> T,</span>
<span id="cb7-10"><a href="#cb7-10" aria-hidden="true" tabindex="-1"></a> <span class="at">plot_diag2 =</span> T,</span>
<span id="cb7-11"><a href="#cb7-11" aria-hidden="true" tabindex="-1"></a> <span class="at">nDiag =</span> <span class="dv">2</span>,</span>
<span id="cb7-12"><a href="#cb7-12" aria-hidden="true" tabindex="-1"></a> <span class="at">verbose =</span> T,</span>
<span id="cb7-13"><a href="#cb7-13" aria-hidden="true" tabindex="-1"></a> <span class="at">ColumnNames_To_Return =</span> <span class="fu">c</span>(</span>
<span id="cb7-14"><a href="#cb7-14" aria-hidden="true" tabindex="-1"></a> <span class="st">"Bloco"</span>,</span>
<span id="cb7-15"><a href="#cb7-15" aria-hidden="true" tabindex="-1"></a> <span class="st">"Genotipo"</span>,</span>
<span id="cb7-16"><a href="#cb7-16" aria-hidden="true" tabindex="-1"></a> <span class="st">"Procedencia"</span>,</span>
<span id="cb7-17"><a href="#cb7-17" aria-hidden="true" tabindex="-1"></a> <span class="st">"especie_id"</span>,</span>
<span id="cb7-18"><a href="#cb7-18" aria-hidden="true" tabindex="-1"></a> <span class="st">"Arv"</span>,</span>
<span id="cb7-19"><a href="#cb7-19" aria-hidden="true" tabindex="-1"></a> <span class="st">"CONCAT."</span>,</span>
<span id="cb7-20"><a href="#cb7-20" aria-hidden="true" tabindex="-1"></a> <span class="st">"DAP.1"</span>,</span>
<span id="cb7-21"><a href="#cb7-21" aria-hidden="true" tabindex="-1"></a> <span class="st">"Alt.1"</span>,</span>
<span id="cb7-22"><a href="#cb7-22" aria-hidden="true" tabindex="-1"></a> <span class="st">"Vol.1"</span></span>
<span id="cb7-23"><a href="#cb7-23" aria-hidden="true" tabindex="-1"></a> )</span>
<span id="cb7-24"><a href="#cb7-24" aria-hidden="true" tabindex="-1"></a> )</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-stdout">
<pre><code>
Transformation to Exp1: lambda = 2.05</code></pre>
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<p><img src="ProgTest_E.pellita_files/figure-html/DiagFunc%20ALT-1.png" class="img-fluid" width="672"></p>
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<p><img src="ProgTest_E.pellita_files/figure-html/DiagFunc%20ALT-2.png" class="img-fluid" width="672"></p>
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<p><img src="ProgTest_E.pellita_files/figure-html/DiagFunc%20ALT-3.png" class="img-fluid" width="672"></p>
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<p><img src="ProgTest_E.pellita_files/figure-html/DiagFunc%20ALT-4.png" class="img-fluid" width="672"></p>
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<p><img src="ProgTest_E.pellita_files/figure-html/DiagFunc%20ALT-5.png" class="img-fluid" width="672"></p>
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<p><img src="ProgTest_E.pellita_files/figure-html/DiagFunc%20ALT-6.png" class="img-fluid" width="672"></p>
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<p><img src="ProgTest_E.pellita_files/figure-html/DiagFunc%20ALT-7.png" class="img-fluid" width="672"></p>
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<p><img src="ProgTest_E.pellita_files/figure-html/DiagFunc%20ALT-8.png" class="img-fluid" width="672"></p>
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<pre><code>$Outliers
Bloco Tratamento Genotipo Procedencia
1 1 NA 2 (PxR) E.pel x E.res (t 06d 105) - IPEF
2 1 NA k7100 Helenvale - E. pellita - IPEF
3 2 NA k6576 Tully - E. pellita - IPEF
4 2 NA k7091 Helenvale - E. pellita - IPEF
5 2 NA k7091 Helenvale - E. pellita - IPEF
6 2 NA k7149 Creb Track - E. pellita - IPEF
7 3 NA k2194 PNG Orehard - E. pellita - IPEF
8 3 NA k6569 MT Ray - E. pellita - IPEF
9 3 NA k6577 Tully - E. pellita - IPEF
10 3 NA k6591 Tully - E. pellita - IPEF
11 4 NA k2137 PNG Orehard - E. pellita - IPEF
12 4 NA k2158 PNG Orehard - E. pellita - IPEF
13 4 NA k2212 PNG Orehard - E. pellita - IPEF
14 5 NA 23 E. Pellita (t19b 102) - IPEF
15 5 NA 3 (PxR) E.pel x E.res (t 06d 105) - IPEF
16 5 NA 4 Pellita E. Pellita (t19b 102) - IPEF
17 5 NA 4 Pellita E. Pellita (t19b 102) - IPEF
18 5 NA 5 (PxT) E.Pelx E.ter (t06d 105) - IPEF
19 5 NA k2144 PNG Orehard - E. pellita - IPEF
20 5 NA k2144 PNG Orehard - E. pellita - IPEF
21 5 NA k2144 PNG Orehard - E. pellita - IPEF
22 5 NA k2158 PNG Orehard - E. pellita - IPEF
23 5 NA k6562 MT Ray - E. pellita - IPEF
24 5 NA k7100 Helenvale - E. pellita - IPEF
25 5 NA k7100 Helenvale - E. pellita - IPEF
especie_id Arv CONCAT. COD.1_fito1 COD.2_fito1
1 E. pellita x E. resinifera 4 1--2 (PxR)-4 <NA> <NA>
2 E. pellita 1 1--k7100-1 <NA> <NA>
3 E. pellita 4 2--k6576-4 <NA> <NA>
4 E. pellita 4 2--k7091-4 <NA> <NA>
5 E. pellita 5 2--k7091-5 <NA> <NA>
6 E. pellita 3 2--k7149-3 <NA> <NA>
7 E. pellita 2 3--k2194-2 <NA> <NA>
8 E. pellita 5 3--k6569-5 <NA> <NA>
9 E. pellita 1 3--k6577-1 <NA> <NA>
10 E. pellita 5 3--k6591-5 <NA> <NA>
11 E. pellita 5 4--k2137-5 <NA> <NA>
12 E. pellita 1 4--k2158-1 <NA> <NA>
13 E. pellita 3 4--k2212-3 <NA> <NA>
14 E. pellita 4 5--23-4 <NA> <NA>
15 E. pellita x E. resinifera 1 5--3 (PxR)-1 <NA> <NA>
16 E. pellita 4 5--4 Pellita-4 <NA> <NA>
17 E. pellita 5 5--4 Pellita-5 <NA> <NA>
18 E. pellita x E. tereticornis 5 5--5 (PxT)-5 <NA> <NA>
19 E. pellita 1 5--k2144-1 <NA> <NA>
20 E. pellita 2 5--k2144-2 <NA> <NA>
21 E. pellita 3 5--k2144-3 <NA> <NA>
22 E. pellita 1 5--k2158-1 <NA> <NA>
23 E. pellita 5 5--k6562-5 <NA> <NA>
24 E. pellita 1 5--k7100-1 <NA> <NA>
25 E. pellita 3 5--k7100-3 <NA> <NA>
COD.1_fito2 COD.1_fito3 CAP.1 DAP.1 Alt.1 Vol.1 COD.1_1 COD.2_1
1 <NA> <NA> 8.0 2.546479 3.4 0.0007272744 <NA> <NA>
2 X <NA> 15.2 4.838310 1.9 0.0014671692 Q <NA>
3 X <NA> 11.0 3.501409 3.0 0.0012132381 Q <NA>
4 L <NA> 6.0 1.909859 2.2 0.0002647065 <NA> <NA>
5 <NA> <NA> 24.2 7.703099 7.0 0.0137015026 <NA> <NA>
6 <NA> <NA> 9.3 2.960282 2.4 0.0006937717 B <NA>
7 <NA> <NA> 15.8 5.029296 5.1 0.0042552372 <NA> <NA>
8 <NA> <NA> 9.2 2.928451 3.5 0.0009901093 Q <NA>
9 Q <NA> NA NA NA NA H <NA>
10 <NA> <NA> 17.9 5.697747 1.8 0.0019276048 Q <NA>
11 <NA> <NA> 15.4 4.901972 5.5 0.0043595690 <NA> <NA>
12 <NA> <NA> 21.4 6.811832 6.5 0.0099490206 <NA> <NA>
13 <NA> <NA> 10.1 3.214930 3.5 0.0011933016 <NA> <NA>
14 X <NA> 23.8 7.575775 8.3 0.0157134458 <NA> <NA>
15 <NA> <NA> 27.2 8.658029 9.0 0.0222545975 <NA> <NA>
16 <NA> <NA> 23.3 7.416620 6.8 0.0123384379 <NA> <NA>
17 X <NA> 21.0 6.684508 6.8 0.0100227507 <NA> <NA>
18 <NA> <NA> 32.5 10.345071 8.1 0.0285950702 <NA> <NA>
19 <NA> <NA> 19.8 6.302536 7.0 0.0091720803 <NA> <NA>
20 <NA> <NA> 25.3 8.053240 7.6 0.0162590086 <NA> <NA>
21 <NA> <NA> 24.4 7.766761 7.5 0.0149238317 <NA> <NA>
22 <NA> <NA> 23.8 7.575775 8.0 0.0151454900 <NA> <NA>
23 <NA> <NA> 24.2 7.703099 7.5 0.0146801814 <NA> <NA>
24 X B 21.8 6.939156 5.5 0.0087360498 Q <NA>
25 <NA> <NA> 24.2 7.703099 7.5 0.0146801814 <NA> <NA>
CAP.3 DAP.3 Alt.3 Vol.3 COD.1_2 COD.2_2 Experiment TraitT
1 47.3 15.056058 17.2 0.1286145655 <NA> <NA> Exp1 341.061986
2 19.0 6.047888 4.9 0.0059121128 Q <NA> Exp1 25.995727
3 13.0 4.138029 5.1 0.0028806886 Q <NA> Exp1 28.217521
4 9.5 3.023944 4.0 0.0012065536 B <NA> Exp1 17.148375
5 50.0 15.915494 17.4 0.1453880405 <NA> <NA> Exp1 349.241592
6 10.5 3.342254 2.4 0.0008843604 B <NA> Exp1 6.017735
7 15.1 4.806479 4.1 0.0031244759 M <NA> Exp1 18.038769
8 17.5 5.570423 4.4 0.0045036870 Q <NA> Exp1 20.848652
9 20.0 6.366198 6.2 0.0082887894 T <NA> Exp1 42.111718
10 33.0 10.504226 1.6 0.0058235430 Q <NA> Exp1 2.620873
11 19.4 6.175212 6.1 0.0076731329 M <NA> Exp1 40.731102
12 21.1 6.716339 5.8 0.0086304279 V <NA> Exp1 36.730546
13 15.6 4.965634 5.1 0.0041481915 <NA> <NA> Exp1 28.217521
14 45.1 14.355776 17.0 0.1155690203 <NA> <NA> Exp1 332.981641
15 49.4 15.724508 16.3 0.1329477307 <NA> <NA> Exp1 305.481271
16 47.4 15.087889 18.7 0.1404228284 <NA> <NA> Exp1 404.832428
17 40.6 12.923381 17.5 0.0964116559 <NA> <NA> Exp1 353.368636
18 50.2 15.979156 17.0 0.1431844257 <NA> <NA> Exp1 332.981641
19 39.6 12.605071 18.0 0.0943413971 <NA> <NA> Exp1 374.376548
20 41.6 13.241691 18.3 0.1058466646 <NA> <NA> Exp1 387.279701
21 42.8 13.623663 18.4 0.1126535255 <NA> <NA> Exp1 391.630527
22 40.9 13.018874 17.9 0.1000781050 <NA> <NA> Exp1 370.125250
23 39.4 12.541410 16.1 0.0835329360 <NA> <NA> Exp1 297.846874
24 37.1 11.809297 18.9 0.0869458885 Q <NA> Exp1 413.758281
25 38.3 12.191269 17.9 0.0877586644 <NA> <NA> Exp1 370.125250
$`Normality test before discrepant analylis`
$`Normality test before discrepant analylis`$Exp1
Normality Test for Exp1 after BoxCox transformation
Before removal of discrepant data
[[1]]
Anderson-Darling normality test
data: MOD[[i]]$rs
A = 5.5616, p-value = 1.046e-13
[[2]]
Lilliefors (Kolmogorov-Smirnov) normality test
data: MOD[[i]]$rs
D = 0.031072, p-value = 7.873e-09
$`Normality test after discrepant analysis`
$`Normality test after discrepant analysis`$Exp1
Normality test for Exp1 after BoxCox transformation
After removal of discrepant data
[[1]]
Anderson-Darling normality test
data: MOD2[[i]]$rs
A = 4.0087, p-value = 5.63e-10
[[2]]
Lilliefors (Kolmogorov-Smirnov) normality test
data: MOD2[[i]]$rs
D = 0.025142, p-value = 1.274e-05
$`Skewness before discrepant analysis`
$`Skewness before discrepant analysis`$Exp1
Skewness in the data of Exp1 after BoxCox transformation
Before removal of discrepant data
[1] -0.06777034
$`Skewnwss after discrepant analysis`
$`Skewnwss after discrepant analysis`$Exp1
Skewness in the data of Exp1 after BoxCox transformation
After removal of discrepant data
[1] -0.08295333
$`Kurtosis before discrepant analysis`
$`Kurtosis before discrepant analysis`$Exp1
Kurtosis in the data of Exp1 after BoxCox transformation
Before removal of discrepant data
[1] 3.472647
$`Kurtosis after discrepant analysis`
$`Kurtosis after discrepant analysis`$Exp1
Kurtosis in the data of Exp1 após transformação BoxCox
After removal of discrepant data
[1] 3.133715
$`Homocedasticity test before discrepant analysis`
$`Homocedasticity test before discrepant analysis`$Exp1
Levene's Test for Homogeneity of Variance (center = median)
Df F value Pr(>F)
group 169 1.4672 0.000114 ***
3572
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
$`Homocedasticity test after discrepant analysis`
$`Homocedasticity test after discrepant analysis`$Exp1
Levene's Test for Homogeneity of Variance (center = median)
Df F value Pr(>F)
group 169 1.4512 0.0001753 ***
3547
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1</code></pre>
</div>
</div>
</section>
<section id="vol" class="level4">
<h4 class="anchored" data-anchor-id="vol"><strong><em>Vol:</em></strong></h4>
<div class="cell">
<div class="sourceCode cell-code" id="cb10"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb10-1"><a href="#cb10-1" aria-hidden="true" tabindex="-1"></a><span class="co"># names(Data)</span></span>
<span id="cb10-2"><a href="#cb10-2" aria-hidden="true" tabindex="-1"></a>DiagVOL <span class="ot"><-</span></span>
<span id="cb10-3"><a href="#cb10-3" aria-hidden="true" tabindex="-1"></a> <span class="fu">DiagFunc</span>(</span>
<span id="cb10-4"><a href="#cb10-4" aria-hidden="true" tabindex="-1"></a> <span class="at">Rep =</span> <span class="st">"Bloco"</span>,</span>
<span id="cb10-5"><a href="#cb10-5" aria-hidden="true" tabindex="-1"></a> <span class="at">Trait =</span> <span class="st">"Vol.3"</span>,</span>
<span id="cb10-6"><a href="#cb10-6" aria-hidden="true" tabindex="-1"></a> <span class="at">Trat =</span> <span class="st">"Genotipo"</span>,</span>
<span id="cb10-7"><a href="#cb10-7" aria-hidden="true" tabindex="-1"></a> <span class="at">data1 =</span> Data,</span>
<span id="cb10-8"><a href="#cb10-8" aria-hidden="true" tabindex="-1"></a> <span class="at">Exp =</span> <span class="cn">NULL</span>,</span>
<span id="cb10-9"><a href="#cb10-9" aria-hidden="true" tabindex="-1"></a> <span class="at">plot_diag1 =</span> T,</span>
<span id="cb10-10"><a href="#cb10-10" aria-hidden="true" tabindex="-1"></a> <span class="at">plot_diag2 =</span> T,</span>
<span id="cb10-11"><a href="#cb10-11" aria-hidden="true" tabindex="-1"></a> <span class="at">nDiag =</span> <span class="dv">2</span>,</span>
<span id="cb10-12"><a href="#cb10-12" aria-hidden="true" tabindex="-1"></a> <span class="at">verbose =</span> T,</span>
<span id="cb10-13"><a href="#cb10-13" aria-hidden="true" tabindex="-1"></a> <span class="at">ColumnNames_To_Return =</span> <span class="fu">c</span>(</span>
<span id="cb10-14"><a href="#cb10-14" aria-hidden="true" tabindex="-1"></a> <span class="st">"Bloco"</span>,</span>
<span id="cb10-15"><a href="#cb10-15" aria-hidden="true" tabindex="-1"></a> <span class="st">"Genotipo"</span>,</span>
<span id="cb10-16"><a href="#cb10-16" aria-hidden="true" tabindex="-1"></a> <span class="st">"Procedencia"</span>,</span>
<span id="cb10-17"><a href="#cb10-17" aria-hidden="true" tabindex="-1"></a> <span class="st">"especie_id"</span>,</span>
<span id="cb10-18"><a href="#cb10-18" aria-hidden="true" tabindex="-1"></a> <span class="st">"Arv"</span>,</span>
<span id="cb10-19"><a href="#cb10-19" aria-hidden="true" tabindex="-1"></a> <span class="st">"CONCAT."</span>,</span>
<span id="cb10-20"><a href="#cb10-20" aria-hidden="true" tabindex="-1"></a> <span class="st">"DAP.1"</span>,</span>
<span id="cb10-21"><a href="#cb10-21" aria-hidden="true" tabindex="-1"></a> <span class="st">"Alt.1"</span>,</span>
<span id="cb10-22"><a href="#cb10-22" aria-hidden="true" tabindex="-1"></a> <span class="st">"Vol.1"</span></span>
<span id="cb10-23"><a href="#cb10-23" aria-hidden="true" tabindex="-1"></a> )</span>
<span id="cb10-24"><a href="#cb10-24" aria-hidden="true" tabindex="-1"></a> )</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-stdout">
<pre><code>
Transformation to Exp1: lambda = 0.6</code></pre>
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<div class="cell-output-display">
<p><img src="ProgTest_E.pellita_files/figure-html/DiagFunc%20Vol-1.png" class="img-fluid" width="672"></p>
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<div class="cell-output-display">
<p><img src="ProgTest_E.pellita_files/figure-html/DiagFunc%20Vol-2.png" class="img-fluid" width="672"></p>
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<div class="cell-output-display">
<p><img src="ProgTest_E.pellita_files/figure-html/DiagFunc%20Vol-3.png" class="img-fluid" width="672"></p>
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<div class="cell-output-display">
<p><img src="ProgTest_E.pellita_files/figure-html/DiagFunc%20Vol-4.png" class="img-fluid" width="672"></p>
</div>
<div class="cell-output-display">
<p><img src="ProgTest_E.pellita_files/figure-html/DiagFunc%20Vol-5.png" class="img-fluid" width="672"></p>
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<p><img src="ProgTest_E.pellita_files/figure-html/DiagFunc%20Vol-6.png" class="img-fluid" width="672"></p>