emm_typing_AdmiralenOla

docker-emm_typing_AdmiralenOla

Docker image with emm_typing software (GitHub page).

emm_typing

"Typing of the emm gene of Streptococcus pyogenes (and other Streptococci)". From here.

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Usage

You can download and run this image using the following commands:

# Get Docker image
docker pull ummidock/emm_typing_admiralenola:0.4-01

# Run emm_typing with default DB
docker run --rm -u $(id -u):$(id -g) -it -v /local/folder/data:/data/ ummidock/emm_typing_admiralenola:0.4-01 emm_typing --outdir /data/output_dir/ --fasta /data/sample_1.fasta /data/sample_2.fasta

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Image Content

This Docker image contains:

• Blast v2.2.31+