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WARNING:werkzeug: * Running on all addresses.
WARNING: This is a development server. Do not use it in a production deployment.
INFO:werkzeug: * Running on http://172.17.103.215:5000/ (Press CTRL+C to quit)
INFO:werkzeug: * Restarting with watchdog (inotify)
WARNING:werkzeug: * Debugger is active!
INFO:werkzeug: * Debugger PIN: 145-273-978
INFO:werkzeug:127.0.0.1 - - [26/Oct/2022 15:31:45] "[32mGET / HTTP/1.1[0m" 302 -
INFO:werkzeug:127.0.0.1 - - [26/Oct/2022 15:31:45] "[32mGET / HTTP/1.1[0m" 302 -
INFO:werkzeug:127.0.0.1 - - [26/Oct/2022 15:31:45] "GET /home HTTP/1.1" 200 -
INFO:werkzeug:127.0.0.1 - - [26/Oct/2022 15:31:45] "GET /static/js.js HTTP/1.1" 200 -
INFO:werkzeug:127.0.0.1 - - [26/Oct/2022 15:31:45] "GET /static/main.css HTTP/1.1" 200 -
INFO:werkzeug: * Detected change in '/home/domsens/Desktop/XspecT/XspecT-GitHub/app.py', reloading
INFO:werkzeug: * Detected change in '/home/domsens/Desktop/XspecT/XspecT-GitHub/.goutputstream-MF9FU1', reloading
INFO:werkzeug: * Detected change in '/home/domsens/Desktop/XspecT/XspecT-GitHub/app.py', reloading
INFO:werkzeug: * Restarting with watchdog (inotify)
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INFO:werkzeug:127.0.0.1 - - [26/Oct/2022 15:32:00] "GET /species HTTP/1.1" 200 -
INFO:werkzeug:127.0.0.1 - - [26/Oct/2022 15:32:01] "GET /static/Logo.png HTTP/1.1" 200 -
INFO:werkzeug:127.0.0.1 - - [26/Oct/2022 15:32:04] "GET /species HTTP/1.1" 200 -
INFO:werkzeug:127.0.0.1 - - [26/Oct/2022 15:32:14] "POST /species HTTP/1.1" 200 -
INFO:werkzeug:127.0.0.1 - - [26/Oct/2022 15:32:16] "[32mGET /assignspec HTTP/1.1[0m" 302 -
INFO:werkzeug:127.0.0.1 - - [26/Oct/2022 15:32:19] "GET /resultsspec HTTP/1.1" 200 -
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INFO:werkzeug:127.0.0.1 - - [26/Oct/2022 15:32:53] "POST /species HTTP/1.1" 200 -
INFO:werkzeug:127.0.0.1 - - [26/Oct/2022 15:32:57] "[32mGET /assignspec HTTP/1.1[0m" 302 -
INFO:werkzeug:127.0.0.1 - - [26/Oct/2022 15:33:00] "GET /resultsspec HTTP/1.1" 200 -
INFO:werkzeug:127.0.0.1 - - [26/Oct/2022 15:33:13] "POST /species HTTP/1.1" 200 -
INFO:werkzeug:127.0.0.1 - - [26/Oct/2022 15:33:13] "[32mGET /assignspec HTTP/1.1[0m" 302 -
INFO:werkzeug:127.0.0.1 - - [26/Oct/2022 15:33:16] "GET /resultsspec HTTP/1.1" 200 -
INFO:werkzeug:127.0.0.1 - - [26/Oct/2022 15:33:26] "POST /species HTTP/1.1" 200 -
INFO:werkzeug:127.0.0.1 - - [26/Oct/2022 15:33:27] "[32mGET /assignspec HTTP/1.1[0m" 302 -
INFO:werkzeug:127.0.0.1 - - [26/Oct/2022 15:33:29] "GET /resultsspec HTTP/1.1" 200 -
INFO:werkzeug:127.0.0.1 - - [26/Oct/2022 15:38:49] "POST /species HTTP/1.1" 200 -
INFO:werkzeug:127.0.0.1 - - [26/Oct/2022 15:38:51] "[32mGET /assignspec HTTP/1.1[0m" 302 -
INFO:werkzeug:127.0.0.1 - - [26/Oct/2022 15:38:53] "GET /resultsspec HTTP/1.1" 200 -
INFO:werkzeug:127.0.0.1 - - [26/Oct/2022 15:39:10] "POST /resultsspec HTTP/1.1" 200 -
INFO:werkzeug:127.0.0.1 - - [26/Oct/2022 15:39:23] "POST /resultsspec HTTP/1.1" 200 -
INFO:werkzeug:127.0.0.1 - - [26/Oct/2022 15:39:43] "POST /resultsspec HTTP/1.1" 200 -
INFO:werkzeug: * Running on http://0.0.0.0:5000/ (Press CTRL+C to quit)
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 12:12:11] "[32mGET / HTTP/1.1[0m" 302 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 12:12:11] "[37mGET /home HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 12:12:11] "[36mGET /static/main.css HTTP/1.1[0m" 304 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 12:12:11] "[36mGET /static/js.js HTTP/1.1[0m" 304 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 12:12:26] "[37mGET /add_and_remove HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 12:12:28] "[37mGET /about HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 12:12:28] "[37mGET /static/Workflow_AspecT.png HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 12:12:28] "[37mGET /static/How-to.png HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 12:12:28] "[37mGET /static/Workflow_ClAssT.png HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 12:12:31] "[37mGET /home HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 12:12:33] "[37mGET /species HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 12:12:33] "[37mGET /static/Logo.png HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 12:12:57] "[37mGET /expert_login HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 12:13:05] "[37mGET /expert_login.html HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 12:13:08] "[37mGET /expert_login.html HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 12:13:40] "[37mGET /expert_options HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 12:13:45] "[32mPOST /expert_options HTTP/1.1[0m" 302 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 12:13:45] "[37mGET /add_and_remove HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 12:13:53] "[37mPOST /expert_options HTTP/1.1[0m" 200 -
INFO:werkzeug: * Running on http://0.0.0.0:5000/ (Press CTRL+C to quit)
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 12:14:39] "[32mGET / HTTP/1.1[0m" 302 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 12:14:40] "[37mGET /home HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 12:14:46] "[37mGET /expert_options HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 12:14:51] "[32mPOST /expert_options HTTP/1.1[0m" 302 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 12:14:51] "[37mGET /add_and_remove HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 12:14:51] "[37mGET /static/expert_options_js.js HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 12:15:03] "[37mPOST /add_and_remove HTTP/1.1[0m" 200 -
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INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 12:15:03] "[37mGET /home HTTP/1.1[0m" 200 -
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ERROR:WebApp:Exception on /assignspec [GET]
Traceback (most recent call last):
File "/home/domsens/.local/lib/python3.8/site-packages/flask/app.py", line 2447, in wsgi_app
response = self.full_dispatch_request()
File "/home/domsens/.local/lib/python3.8/site-packages/flask/app.py", line 1952, in full_dispatch_request
rv = self.handle_user_exception(e)
File "/home/domsens/.local/lib/python3.8/site-packages/flask/app.py", line 1821, in handle_user_exception
reraise(exc_type, exc_value, tb)
File "/home/domsens/.local/lib/python3.8/site-packages/flask/_compat.py", line 39, in reraise
raise value
File "/home/domsens/.local/lib/python3.8/site-packages/flask/app.py", line 1950, in full_dispatch_request
rv = self.dispatch_request()
File "/home/domsens/.local/lib/python3.8/site-packages/flask/app.py", line 1936, in dispatch_request
return self.view_functions[rule.endpoint](**req.view_args)
File "/home/domsens/Desktop/XspecT/XspecT-GitHub/WebApp.py", line 371, in assignspec
score_oxa, names_oxa, coordinates_forward, coordinates_reversed = single_oxa(reads, ext)
File "/home/domsens/Desktop/XspecT/XspecT-GitHub/search_filter.py", line 288, in single_oxa
coordinates_forward, coordinates_reversed = BF.lookup_oxa(reads, ext)
File "/home/domsens/Desktop/XspecT/XspecT-GitHub/BF_v2.py", line 512, in lookup_oxa
coordinates_forward = self.oxa_search_genomes_v3(reads)
File "/home/domsens/Desktop/XspecT/XspecT-GitHub/BF_v2.py", line 584, in oxa_search_genomes_v3
self.lookup(kmer, True)
File "/home/domsens/Desktop/XspecT/XspecT-GitHub/BF_v2.py", line 219, in lookup
if self.table.lookup(self.names[i], kmer):
File "/home/domsens/Desktop/XspecT/XspecT-GitHub/OXA_Table.py", line 32, in lookup
if kmer in self.kmere[gene]:
KeyError: 'OXA-213_family'
ERROR:WebApp:SERVER ERROR 500 at route http://127.0.0.1:5000/assignspec with error message: 500 Internal Server Error: The server encountered an internal error and was unable to complete your request. Either the server is overloaded or there is an error in the application.
ERROR:WebApp:Parameters: IC_LookupNone,
OXA: True,
QUICK: GCF_000162115.1_ASM16211v1_genomic.fna,
Filename: files/e164cef55e8092b0GATCAATCAGTAAAAATCCACACAAGTTGTTCTTCATATTCTCTTAATGATC.txt,
Vals OXA: None,
Vals IC: None,
Hits IC: None,
Time: None,
Prediction: None
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 12:32:23] "[37mGET /assignspec HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 12:32:42] "[37mGET /about HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 12:32:43] "[37mGET /static/How-to.png HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 12:32:44] "[37mGET /species HTTP/1.1[0m" 200 -
WARNING:werkzeug: * Running on all addresses.
WARNING: This is a development server. Do not use it in a production deployment.
INFO:werkzeug: * Running on http://172.17.102.17:5000/ (Press CTRL+C to quit)
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 20:10:29] "[32mGET / HTTP/1.1[0m" 302 -
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INFO:werkzeug: * Running on http://0.0.0.0:5000/ (Press CTRL+C to quit)
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INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 20:50:54] "[37mPOST /species HTTP/1.1[0m" 200 -
ERROR:WebApp:Exception on /assignspec [GET]
Traceback (most recent call last):
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 2447, in wsgi_app
response = self.full_dispatch_request()
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1952, in full_dispatch_request
rv = self.handle_user_exception(e)
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1821, in handle_user_exception
reraise(exc_type, exc_value, tb)
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\_compat.py", line 39, in reraise
raise value
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1950, in full_dispatch_request
rv = self.dispatch_request()
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1936, in dispatch_request
return self.view_functions[rule.endpoint](**req.view_args)
File "F:\project\XspecT-GitHub\XspecT-main\WebApp.py", line 371, in assignspec
score_oxa, names_oxa, coordinates_forward, coordinates_reversed = single_oxa(reads, ext)
File "F:\project\XspecT-GitHub\XspecT-main\search_filter.py", line 289, in single_oxa
coordinates_forward, coordinates_reversed = BF.lookup_oxa(reads, ext)
File "F:\project\XspecT-GitHub\XspecT-main\BF_v2.py", line 515, in lookup_oxa
reads[r] = Seq(reads[r])
TypeError: 'set' object is not subscriptable
ERROR:WebApp:SERVER ERROR 500 at route http://127.0.0.1:5000/assignspec with error message: 500 Internal Server Error: The server encountered an internal error and was unable to complete your request. Either the server is overloaded or there is an error in the application.
ERROR:WebApp:Parameters: IC_LookupNone,
OXA: True,
QUICK: GCF_000018445.1_ASM1844v1_genomic.fna,
Filename: files/cd7f5f79b9c89343AAAGTTGTAGCACTTTGATGATTTTTTTTGATTAGAAAAATGCTAT.txt,
Vals OXA: None,
Vals IC: None,
Hits IC: None,
Time: None,
Prediction: None
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 20:50:57] "[37mGET /assignspec HTTP/1.1[0m" 200 -
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INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 20:54:18] "[37mPOST /species HTTP/1.1[0m" 200 -
ERROR:WebApp:Exception on /assignspec [GET]
Traceback (most recent call last):
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 2447, in wsgi_app
response = self.full_dispatch_request()
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1952, in full_dispatch_request
rv = self.handle_user_exception(e)
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1821, in handle_user_exception
reraise(exc_type, exc_value, tb)
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\_compat.py", line 39, in reraise
raise value
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1950, in full_dispatch_request
rv = self.dispatch_request()
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1936, in dispatch_request
return self.view_functions[rule.endpoint](**req.view_args)
File "F:\project\XspecT-GitHub\XspecT-main\WebApp.py", line 371, in assignspec
score_oxa, names_oxa, coordinates_forward, coordinates_reversed = single_oxa(reads, ext)
File "F:\project\XspecT-GitHub\XspecT-main\search_filter.py", line 289, in single_oxa
coordinates_forward, coordinates_reversed = BF.lookup_oxa(reads, ext)
File "F:\project\XspecT-GitHub\XspecT-main\BF_v2.py", line 515, in lookup_oxa
reads[r] = Seq(reads[r])
TypeError: 'set' object is not subscriptable
ERROR:WebApp:SERVER ERROR 500 at route http://127.0.0.1:5000/assignspec with error message: 500 Internal Server Error: The server encountered an internal error and was unable to complete your request. Either the server is overloaded or there is an error in the application.
ERROR:WebApp:Parameters: IC_LookupNone,
OXA: True,
QUICK: GCF_000018445.1_ASM1844v1_genomic.fna,
Filename: files/12b8c1b2d33fe1ecAAAGTTGTAGCACTTTGATGATTTTTTTTGATTAGAAAAATGCTAT.txt,
Vals OXA: None,
Vals IC: None,
Hits IC: None,
Time: 2.62,
Prediction: A. baumannii
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INFO:werkzeug: * Running on http://0.0.0.0:5000/ (Press CTRL+C to quit)
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 21:11:30] "[32mGET / HTTP/1.1[0m" 302 -
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INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 21:26:28] "[37mGET /resultsspec HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 21:27:19] "[37mGET /resultsspec HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 21:27:52] "[37mGET /resultsspec HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 21:27:58] "[37mGET /resultsspec HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 21:27:58] "[37mGET /static/main.css HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 21:27:58] "[37mGET /static/js.js HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 21:27:58] "[37mGET /static/Logo.png HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 21:29:21] "[37mGET /resultsspec HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 21:29:21] "[37mGET /static/main.css HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 21:29:21] "[37mGET /static/js.js HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 21:29:22] "[37mGET /static/Logo.png HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 21:30:07] "[37mGET /resultsspec HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 21:30:07] "[37mGET /static/main.css HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 21:30:07] "[37mGET /static/js.js HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 21:30:07] "[37mGET /static/Logo.png HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 21:30:43] "[37mGET /resultsspec HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 21:30:51] "[37mPOST /species HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 21:31:08] "[32mGET /assignspec HTTP/1.1[0m" 302 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 21:31:10] "[37mGET /resultsspec HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 21:33:00] "[37mPOST /species HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 21:33:17] "[32mGET /assignspec HTTP/1.1[0m" 302 -
INFO:werkzeug:127.0.0.1 - - [02/Nov/2022 21:33:20] "[37mGET /resultsspec HTTP/1.1[0m" 200 -
INFO:werkzeug: * Running on http://0.0.0.0:5000/ (Press CTRL+C to quit)
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:02:03] "[32mGET / HTTP/1.1[0m" 302 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:02:03] "[37mGET /home HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:02:04] "[37mGET /static/main.css HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:02:04] "[37mGET /static/js.js HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:02:20] "[37mGET /species HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:02:20] "[37mGET /static/Logo.png HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:02:25] "[37mGET /species HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:03:09] "[37mPOST /species HTTP/1.1[0m" 200 -
ERROR:WebApp:Exception on /assignspec [GET]
Traceback (most recent call last):
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 2447, in wsgi_app
response = self.full_dispatch_request()
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1952, in full_dispatch_request
rv = self.handle_user_exception(e)
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1821, in handle_user_exception
reraise(exc_type, exc_value, tb)
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\_compat.py", line 39, in reraise
raise value
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1950, in full_dispatch_request
rv = self.dispatch_request()
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1936, in dispatch_request
return self.view_functions[rule.endpoint](**req.view_args)
File "F:\project\XspecT-GitHub\XspecT-main\WebApp.py", line 371, in assignspec
score_oxa, names_oxa, coordinates_forward, coordinates_reversed = single_oxa(reads, ext)
File "F:\project\XspecT-GitHub\XspecT-main\search_filter.py", line 355, in single_oxa
BF.read_clonetypes(paths, oxas)
File "F:\project\XspecT-GitHub\XspecT-main\BF_v2.py", line 170, in read_clonetypes
with open(path, 'rb') as fh:
PermissionError: [Errno 13] Permission denied: 'filter/OXAs/families'
ERROR:WebApp:SERVER ERROR 500 at route http://127.0.0.1:5000/assignspec with error message: 500 Internal Server Error: The server encountered an internal error and was unable to complete your request. Either the server is overloaded or there is an error in the application.
ERROR:WebApp:Parameters: IC_LookupNone,
OXA: True,
QUICK: reads_simulated_0_1perc_R2.fastq,
Filename: files/e71102ed58d64d0cGGAGTGTGTGGAGATAGAAAAACATACAGGATTGTAATTGTTTCCTGTGAGACTAACAGAAAATTCAAGCTAGTGAAGTATGTTTATGCATGGCACACTTCTCACCAGCAATTTTAGGAAGTTCTA.txt,
Vals OXA: None,
Vals IC: None,
Hits IC: None,
Time: None,
Prediction: None
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:03:09] "[37mGET /assignspec HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:03:26] "[37mGET /species HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:03:29] "[37mPOST /species HTTP/1.1[0m" 200 -
ERROR:WebApp:Exception on /assignspec [GET]
Traceback (most recent call last):
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 2447, in wsgi_app
response = self.full_dispatch_request()
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1952, in full_dispatch_request
rv = self.handle_user_exception(e)
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1821, in handle_user_exception
reraise(exc_type, exc_value, tb)
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\_compat.py", line 39, in reraise
raise value
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1950, in full_dispatch_request
rv = self.dispatch_request()
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1936, in dispatch_request
return self.view_functions[rule.endpoint](**req.view_args)
File "F:\project\XspecT-GitHub\XspecT-main\WebApp.py", line 371, in assignspec
score_oxa, names_oxa, coordinates_forward, coordinates_reversed = single_oxa(reads, ext)
File "F:\project\XspecT-GitHub\XspecT-main\search_filter.py", line 355, in single_oxa
BF.read_clonetypes(paths, oxas)
File "F:\project\XspecT-GitHub\XspecT-main\BF_v2.py", line 170, in read_clonetypes
with open(path, 'rb') as fh:
PermissionError: [Errno 13] Permission denied: 'filter/OXAs/families'
ERROR:WebApp:SERVER ERROR 500 at route http://127.0.0.1:5000/assignspec with error message: 500 Internal Server Error: The server encountered an internal error and was unable to complete your request. Either the server is overloaded or there is an error in the application.
ERROR:WebApp:Parameters: IC_LookupNone,
OXA: True,
QUICK: reads_simulated_0_1perc_R2.fastq,
Filename: files/96a6911d64dfcc57GGAGTGTGTGGAGATAGAAAAACATACAGGATTGTAATTGTTTCCTGTGAGACTAACAGAAAATTCAAGCTAGTGAAGTATGTTTATGCATGGCACACTTCTCACCAGCAATTTTAGGAAGTTCTA.txt,
Vals OXA: None,
Vals IC: None,
Hits IC: None,
Time: None,
Prediction: None
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:03:30] "[37mGET /assignspec HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:03:34] "[37mGET /species HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:03:41] "[37mPOST /species HTTP/1.1[0m" 200 -
ERROR:WebApp:Exception on /assignspec [GET]
Traceback (most recent call last):
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 2447, in wsgi_app
response = self.full_dispatch_request()
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1952, in full_dispatch_request
rv = self.handle_user_exception(e)
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1821, in handle_user_exception
reraise(exc_type, exc_value, tb)
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\_compat.py", line 39, in reraise
raise value
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1950, in full_dispatch_request
rv = self.dispatch_request()
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1936, in dispatch_request
return self.view_functions[rule.endpoint](**req.view_args)
File "F:\project\XspecT-GitHub\XspecT-main\WebApp.py", line 371, in assignspec
score_oxa, names_oxa, coordinates_forward, coordinates_reversed = single_oxa(reads, ext)
File "F:\project\XspecT-GitHub\XspecT-main\search_filter.py", line 355, in single_oxa
BF.read_clonetypes(paths, oxas)
File "F:\project\XspecT-GitHub\XspecT-main\BF_v2.py", line 170, in read_clonetypes
with open(path, 'rb') as fh:
PermissionError: [Errno 13] Permission denied: 'filter/OXAs/families'
ERROR:WebApp:SERVER ERROR 500 at route http://127.0.0.1:5000/assignspec with error message: 500 Internal Server Error: The server encountered an internal error and was unable to complete your request. Either the server is overloaded or there is an error in the application.
ERROR:WebApp:Parameters: IC_LookupNone,
OXA: True,
QUICK: reads_simulated_0_1perc_R2.fastq,
Filename: files/a1039644270d2777TCTGGCTTGTAGAGTTTCTGTCCTGAGATCAGCTGTTAGTCTGATGGGCTTCCTTTGTGGATAACCCGACCTTTCTCTCTGGCTGCCCTTAGCATTTTTTCCTTCGTTTCAACTTTGGTAAATCTG.txt,
Vals OXA: None,
Vals IC: None,
Hits IC: None,
Time: None,
Prediction: None
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:03:41] "[37mGET /assignspec HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:03:46] "[37mGET /species HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:04:01] "[37mGET /species HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:04:17] "[37mPOST /species HTTP/1.1[0m" 200 -
ERROR:WebApp:Exception on /assignspec [GET]
Traceback (most recent call last):
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 2447, in wsgi_app
response = self.full_dispatch_request()
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1952, in full_dispatch_request
rv = self.handle_user_exception(e)
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1821, in handle_user_exception
reraise(exc_type, exc_value, tb)
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\_compat.py", line 39, in reraise
raise value
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1950, in full_dispatch_request
rv = self.dispatch_request()
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1936, in dispatch_request
return self.view_functions[rule.endpoint](**req.view_args)
File "F:\project\XspecT-GitHub\XspecT-main\WebApp.py", line 371, in assignspec
score_oxa, names_oxa, coordinates_forward, coordinates_reversed = single_oxa(reads, ext)
File "F:\project\XspecT-GitHub\XspecT-main\search_filter.py", line 355, in single_oxa
BF.read_clonetypes(paths, oxas)
File "F:\project\XspecT-GitHub\XspecT-main\BF_v2.py", line 170, in read_clonetypes
with open(path, 'rb') as fh:
PermissionError: [Errno 13] Permission denied: 'filter/OXAs/families'
ERROR:WebApp:SERVER ERROR 500 at route http://127.0.0.1:5000/assignspec with error message: 500 Internal Server Error: The server encountered an internal error and was unable to complete your request. Either the server is overloaded or there is an error in the application.
ERROR:WebApp:Parameters: IC_LookupNone,
OXA: True,
QUICK: reads_simulated_00_1perc_R2.fastq,
Filename: files/2afc5e09084f0dd8AAAGAAAAGAAAGAAAGAAAAAGAAATAACAACAACAAACCAGGCAGGCCAGGCTCAGTGGCTCATGCCTATAATCCCAGCAATTTGGGAGGCTGAGGTGGGCGGATCACCTGAAGTCAGGGTTTC.txt,
Vals OXA: None,
Vals IC: None,
Hits IC: None,
Time: None,
Prediction: None
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:04:18] "[37mGET /assignspec HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:04:24] "[37mGET /species HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:04:30] "[37mPOST /species HTTP/1.1[0m" 200 -
ERROR:WebApp:Exception on /assignspec [GET]
Traceback (most recent call last):
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 2447, in wsgi_app
response = self.full_dispatch_request()
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1952, in full_dispatch_request
rv = self.handle_user_exception(e)
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1821, in handle_user_exception
reraise(exc_type, exc_value, tb)
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\_compat.py", line 39, in reraise
raise value
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1950, in full_dispatch_request
rv = self.dispatch_request()
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1936, in dispatch_request
return self.view_functions[rule.endpoint](**req.view_args)
File "F:\project\XspecT-GitHub\XspecT-main\WebApp.py", line 371, in assignspec
score_oxa, names_oxa, coordinates_forward, coordinates_reversed = single_oxa(reads, ext)
File "F:\project\XspecT-GitHub\XspecT-main\search_filter.py", line 355, in single_oxa
BF.read_clonetypes(paths, oxas)
File "F:\project\XspecT-GitHub\XspecT-main\BF_v2.py", line 170, in read_clonetypes
with open(path, 'rb') as fh:
PermissionError: [Errno 13] Permission denied: 'filter/OXAs/families'
ERROR:WebApp:SERVER ERROR 500 at route http://127.0.0.1:5000/assignspec with error message: 500 Internal Server Error: The server encountered an internal error and was unable to complete your request. Either the server is overloaded or there is an error in the application.
ERROR:WebApp:Parameters: IC_LookupNone,
OXA: True,
QUICK: reads_simulated_00_1perc_R2.fastq,
Filename: files/e917ad84b1cb40caAAAGAAAAGAAAGAAAGAAAAAGAAATAACAACAACAAACCAGGCAGGCCAGGCTCAGTGGCTCATGCCTATAATCCCAGCAATTTGGGAGGCTGAGGTGGGCGGATCACCTGAAGTCAGGGTTTC.txt,
Vals OXA: None,
Vals IC: None,
Hits IC: None,
Time: None,
Prediction: None
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:04:30] "[37mGET /assignspec HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:06:32] "[37mGET /species HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:06:36] "[37mPOST /species HTTP/1.1[0m" 200 -
ERROR:WebApp:Exception on /assignspec [GET]
Traceback (most recent call last):
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 2447, in wsgi_app
response = self.full_dispatch_request()
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1952, in full_dispatch_request
rv = self.handle_user_exception(e)
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1821, in handle_user_exception
reraise(exc_type, exc_value, tb)
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\_compat.py", line 39, in reraise
raise value
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1950, in full_dispatch_request
rv = self.dispatch_request()
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1936, in dispatch_request
return self.view_functions[rule.endpoint](**req.view_args)
File "F:\project\XspecT-GitHub\XspecT-main\WebApp.py", line 371, in assignspec
score_oxa, names_oxa, coordinates_forward, coordinates_reversed = single_oxa(reads, ext)
File "F:\project\XspecT-GitHub\XspecT-main\search_filter.py", line 355, in single_oxa
BF.read_clonetypes(paths, oxas)
File "F:\project\XspecT-GitHub\XspecT-main\BF_v2.py", line 170, in read_clonetypes
with open(path, 'rb') as fh:
PermissionError: [Errno 13] Permission denied: 'filter/OXAs/families'
ERROR:WebApp:SERVER ERROR 500 at route http://127.0.0.1:5000/assignspec with error message: 500 Internal Server Error: The server encountered an internal error and was unable to complete your request. Either the server is overloaded or there is an error in the application.
ERROR:WebApp:Parameters: IC_LookupNone,
OXA: True,
QUICK: reads_simulated_00_1perc_R2.fastq,
Filename: files/801b804fe3e7ed2aAAAGAAAAGAAAGAAAGAAAAAGAAATAACAACAACAAACCAGGCAGGCCAGGCTCAGTGGCTCATGCCTATAATCCCAGCAATTTGGGAGGCTGAGGTGGGCGGATCACCTGAAGTCAGGGTTTC.txt,
Vals OXA: None,
Vals IC: None,
Hits IC: None,
Time: None,
Prediction: None
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:06:37] "[37mGET /assignspec HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:07:11] "[37mGET /ic HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:07:12] "[37mGET /static/Logo2.png HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:07:13] "[37mGET /ic HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:07:21] "[37mPOST /ic HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:07:29] "[32mGET /assign HTTP/1.1[0m" 302 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:07:32] "[37mGET /results HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:07:44] "[37mPOST /ic HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:08:13] "[32mGET / HTTP/1.1[0m" 302 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:08:13] "[37mGET /home HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:08:38] "[37mGET /species HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:08:43] "[32mGET / HTTP/1.1[0m" 302 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:08:43] "[37mGET /home HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:09:55] "[37mGET /species HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:09:56] "[37mGET /species HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:09:57] "[37mGET /species HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:09:59] "[37mGET /species HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:10:05] "[37mPOST /species HTTP/1.1[0m" 200 -
ERROR:WebApp:Exception on /assignspec [GET]
Traceback (most recent call last):
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 2447, in wsgi_app
response = self.full_dispatch_request()
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1952, in full_dispatch_request
rv = self.handle_user_exception(e)
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1821, in handle_user_exception
reraise(exc_type, exc_value, tb)
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\_compat.py", line 39, in reraise
raise value
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1950, in full_dispatch_request
rv = self.dispatch_request()
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1936, in dispatch_request
return self.view_functions[rule.endpoint](**req.view_args)
File "F:\project\XspecT-GitHub\XspecT-main\WebApp.py", line 371, in assignspec
score_oxa, names_oxa, coordinates_forward, coordinates_reversed = single_oxa(reads, ext)
File "F:\project\XspecT-GitHub\XspecT-main\search_filter.py", line 355, in single_oxa
BF.read_clonetypes(paths, oxas)
File "F:\project\XspecT-GitHub\XspecT-main\BF_v2.py", line 170, in read_clonetypes
with open(path, 'rb') as fh:
PermissionError: [Errno 13] Permission denied: 'filter/OXAs/families'
ERROR:WebApp:SERVER ERROR 500 at route http://127.0.0.1:5000/assignspec with error message: 500 Internal Server Error: The server encountered an internal error and was unable to complete your request. Either the server is overloaded or there is an error in the application.
ERROR:WebApp:Parameters: IC_Lookup[True, True, True, True, True, True, True, True, False],
OXA: True,
QUICK: reads_simulated_00_1perc_R2.fastq,
Filename: files/372cf45ae38c5b27AAAGAAAAGAAAGAAAGAAAAAGAAATAACAACAACAAACCAGGCAGGCCAGGCTCAGTGGCTCATGCCTATAATCCCAGCAATTTGGGAGGCTGAGGTGGGCGGATCACCTGAAGTCAGGGTTTC.txt,
Vals OXA: None,
Vals IC: [0.67, 0.67, 0.76, 0.64, 0.67, 0.66, 0.98, 0.67],
Hits IC: [263864, 265328, 300238, 253588, 264270, 257875, 384695, 261801],
Time: 8.06,
Prediction: International Clone 7
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:10:06] "[37mGET /assignspec HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:10:07] "[37mGET /species HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:10:14] "[37mGET /species HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:10:18] "[37mGET /species HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:10:24] "[37mPOST /species HTTP/1.1[0m" 200 -
ERROR:WebApp:Exception on /assignspec [GET]
Traceback (most recent call last):
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 2447, in wsgi_app
response = self.full_dispatch_request()
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1952, in full_dispatch_request
rv = self.handle_user_exception(e)
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1821, in handle_user_exception
reraise(exc_type, exc_value, tb)
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\_compat.py", line 39, in reraise
raise value
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1950, in full_dispatch_request
rv = self.dispatch_request()
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1936, in dispatch_request
return self.view_functions[rule.endpoint](**req.view_args)
File "F:\project\XspecT-GitHub\XspecT-main\WebApp.py", line 371, in assignspec
score_oxa, names_oxa, coordinates_forward, coordinates_reversed = single_oxa(reads, ext)
File "F:\project\XspecT-GitHub\XspecT-main\search_filter.py", line 355, in single_oxa
BF.read_clonetypes(paths, oxas)
File "F:\project\XspecT-GitHub\XspecT-main\BF_v2.py", line 170, in read_clonetypes
with open(path, 'rb') as fh:
PermissionError: [Errno 13] Permission denied: 'filter/OXAs/families'
ERROR:WebApp:SERVER ERROR 500 at route http://127.0.0.1:5000/assignspec with error message: 500 Internal Server Error: The server encountered an internal error and was unable to complete your request. Either the server is overloaded or there is an error in the application.
ERROR:WebApp:Parameters: IC_Lookup[True, True, True, True, True, True, True, True, False],
OXA: True,
QUICK: reads_simulated_0_1perc_R2.fastq,
Filename: files/6b488f400ffec3a3TCACATGAGCCCAGCACCATTCTAAGTGCTTTAGAGTAAATCCTCATAGCAATCCTATGAGGCCAATGTTAGCATCCCTACTTTATAAAGAAACTGGGGCACAGAGAGAGATGAAATTTGCAAGCT.txt,
Vals OXA: None,
Vals IC: [0.67, 0.67, 0.76, 0.64, 0.67, 0.66, 0.98, 0.67],
Hits IC: [263864, 265328, 300238, 253588, 264270, 257875, 384695, 261801],
Time: 8.06,
Prediction: International Clone 7
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:10:24] "[37mGET /assignspec HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:10:25] "[37mGET /species HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:48:48] "[37mGET /species HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:49:00] "[37mPOST /species HTTP/1.1[0m" 200 -
ERROR:WebApp:Exception on /assignspec [GET]
Traceback (most recent call last):
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 2447, in wsgi_app
response = self.full_dispatch_request()
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1952, in full_dispatch_request
rv = self.handle_user_exception(e)
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1821, in handle_user_exception
reraise(exc_type, exc_value, tb)
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\_compat.py", line 39, in reraise
raise value
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1950, in full_dispatch_request
rv = self.dispatch_request()
File "C:\Users\Dominik\AppData\Local\Programs\Python\Python38\lib\site-packages\flask\app.py", line 1936, in dispatch_request
return self.view_functions[rule.endpoint](**req.view_args)
File "F:\project\XspecT-GitHub\XspecT-main\WebApp.py", line 371, in assignspec
score_oxa, names_oxa, coordinates_forward, coordinates_reversed = single_oxa(reads, ext)
File "F:\project\XspecT-GitHub\XspecT-main\search_filter.py", line 355, in single_oxa
BF.read_clonetypes(paths, oxas)
File "F:\project\XspecT-GitHub\XspecT-main\BF_v2.py", line 170, in read_clonetypes
with open(path, 'rb') as fh:
PermissionError: [Errno 13] Permission denied: 'filter/OXAs/families'
ERROR:WebApp:SERVER ERROR 500 at route http://127.0.0.1:5000/assignspec with error message: 500 Internal Server Error: The server encountered an internal error and was unable to complete your request. Either the server is overloaded or there is an error in the application.
ERROR:WebApp:Parameters: IC_Lookup[True, True, True, True, True, True, True, True, False],
OXA: True,
QUICK: reads_simulated_0_1perc_R2.fastq,
Filename: files/9a9b882b9a2ac899TCACATGAGCCCAGCACCATTCTAAGTGCTTTAGAGTAAATCCTCATAGCAATCCTATGAGGCCAATGTTAGCATCCCTACTTTATAAAGAAACTGGGGCACAGAGAGAGATGAAATTTGCAAGCT.txt,
Vals OXA: None,
Vals IC: [0.67, 0.67, 0.76, 0.64, 0.67, 0.66, 0.98, 0.67],
Hits IC: [263864, 265328, 300238, 253588, 264270, 257875, 384695, 261801],
Time: 8.06,
Prediction: International Clone 7
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:49:00] "[37mGET /assignspec HTTP/1.1[0m" 200 -
INFO:werkzeug: * Restarting with stat
WARNING:werkzeug: * Debugger is active!
INFO:werkzeug: * Debugger PIN: 140-607-571
INFO:werkzeug: * Running on http://0.0.0.0:5000/ (Press CTRL+C to quit)
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:50:17] "[32mGET / HTTP/1.1[0m" 302 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:50:17] "[37mGET /home HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:51:59] "[37mGET /species HTTP/1.1[0m" 200 -
INFO:WebApp:Assignment started for AAAGAAAAGAAAGAAAGAAAAAGAAATAACAACAACAAACCAGGCAGGCCAGGCTCAGTGGCTCATGCCTATAATCCCAGCAATTTGGGAGGCTGAGGTGGGCGGATCACCTGAAGTCAGGGTTTC
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:52:05] "[37mPOST /species HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:52:06] "[35m[1mGET /assignspec HTTP/1.1[0m" 500 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:52:06] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=style.css HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:52:06] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=debugger.js HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:52:06] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=jquery.js HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:52:06] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=console.png HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:52:06] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=ubuntu.ttf HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:52:06] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=console.png HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:53:56] "[37mGET /species HTTP/1.1[0m" 200 -
INFO:WebApp:Assignment started for NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:54:01] "[37mPOST /species HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:54:01] "[35m[1mGET /assignspec HTTP/1.1[0m" 500 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:54:01] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=style.css HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:54:01] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=jquery.js HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:54:01] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=debugger.js HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:54:02] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=ubuntu.ttf HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:54:02] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=console.png HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:54:08] "[37mGET /species HTTP/1.1[0m" 200 -
INFO:WebApp:Assignment started for AAAGAAAAGAAAGAAAGAAAAAGAAATAACAACAACAAACCAGGCAGGCCAGGCTCAGTGGCTCATGCCTATAATCCCAGCAATTTGGGAGGCTGAGGTGGGCGGATCACCTGAAGTCAGGGTTTC
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:54:11] "[37mPOST /species HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:54:12] "[35m[1mGET /assignspec HTTP/1.1[0m" 500 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:54:12] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=style.css HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:54:12] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=jquery.js HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:54:12] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=debugger.js HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:54:12] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=ubuntu.ttf HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:54:12] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=console.png HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:54:14] "[37mGET /species HTTP/1.1[0m" 200 -
INFO:werkzeug: * Detected change in 'F:\\project\\XspecT-GitHub\\XspecT-main\\WebApp.py', reloading
INFO:werkzeug: * Restarting with stat
WARNING:werkzeug: * Debugger is active!
INFO:werkzeug: * Debugger PIN: 140-607-571
INFO:werkzeug: * Running on http://0.0.0.0:5000/ (Press CTRL+C to quit)
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:56:39] "[32mGET / HTTP/1.1[0m" 302 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 16:56:39] "[37mGET /home HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:00:52] "[37mGET /species HTTP/1.1[0m" 200 -
INFO:WebApp:Assignment started for TCACATGAGCCCAGCACCATTCTAAGTGCTTTAGAGTAAATCCTCATAGCAATCCTATGAGGCCAATGTTAGCATCCCTACTTTATAAAGAAACTGGGGCACAGAGAGAGATGAAATTTGCAAGCT
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:00:58] "[37mPOST /species HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:00:58] "[35m[1mGET /assignspec HTTP/1.1[0m" 500 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:00:58] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=style.css HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:00:58] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=jquery.js HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:00:58] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=debugger.js HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:00:59] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=console.png HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:00:59] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=ubuntu.ttf HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:10:14] "[37mGET /species HTTP/1.1[0m" 200 -
INFO:WebApp:Assignment started for TCACATGAGCCCAGCACCATTCTAAGTGCTTTAGAGTAAATCCTCATAGCAATCCTATGAGGCCAATGTTAGCATCCCTACTTTATAAAGAAACTGGGGCACAGAGAGAGATGAAATTTGCAAGCT
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:10:20] "[37mPOST /species HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:10:20] "[35m[1mGET /assignspec HTTP/1.1[0m" 500 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:10:20] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=style.css HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:10:20] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=jquery.js HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:10:20] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=debugger.js HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:10:20] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=ubuntu.ttf HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:10:20] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=console.png HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:10:42] "[37mGET /species HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:10:43] "[37mGET /species HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:10:46] "[37mGET /species HTTP/1.1[0m" 200 -
INFO:WebApp:Assignment started for TCACATGAGCCCAGCACCATTCTAAGTGCTTTAGAGTAAATCCTCATAGCAATCCTATGAGGCCAATGTTAGCATCCCTACTTTATAAAGAAACTGGGGCACAGAGAGAGATGAAATTTGCAAGCT
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:10:50] "[37mPOST /species HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:10:51] "[35m[1mGET /assignspec HTTP/1.1[0m" 500 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:10:51] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=style.css HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:10:51] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=jquery.js HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:10:51] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=debugger.js HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:10:51] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=console.png HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:10:51] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=ubuntu.ttf HTTP/1.1[0m" 200 -
INFO:werkzeug: * Restarting with stat
WARNING:werkzeug: * Debugger is active!
INFO:werkzeug: * Debugger PIN: 140-607-571
INFO:werkzeug: * Running on http://0.0.0.0:5000/ (Press CTRL+C to quit)
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:11:56] "[32mGET / HTTP/1.1[0m" 302 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:11:56] "[37mGET /home HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:11:58] "[37mGET /species HTTP/1.1[0m" 200 -
INFO:WebApp:Assignment started for TCACATGAGCCCAGCACCATTCTAAGTGCTTTAGAGTAAATCCTCATAGCAATCCTATGAGGCCAATGTTAGCATCCCTACTTTATAAAGAAACTGGGGCACAGAGAGAGATGAAATTTGCAAGCT
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:12:02] "[37mPOST /species HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:12:02] "[35m[1mGET /assignspec HTTP/1.1[0m" 500 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:12:02] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=style.css HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:12:02] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=jquery.js HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:12:02] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=debugger.js HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:12:03] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=console.png HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:12:03] "[37mGET /assignspec?__debugger__=yes&cmd=resource&f=ubuntu.ttf HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:12:51] "[37mGET /species HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:13:23] "[37mGET /species HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:13:23] "[37mGET /static/js.js HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:13:23] "[37mGET /static/main.css HTTP/1.1[0m" 200 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:13:23] "[37mGET /static/Logo.png HTTP/1.1[0m" 200 -
INFO:WebApp:Assignment started for reads_simulated_0_1perc_R2.fastq
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:13:29] "[37mPOST /species HTTP/1.1[0m" 200 -
INFO:WebApp:Assignment done for files/b2e7d10eeef6febdreads_simulated_0_1perc_R2.fastq.txt, Time needed: 10.04
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:13:40] "[32mGET /assignspec HTTP/1.1[0m" 302 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:13:42] "[37mGET /resultsspec HTTP/1.1[0m" 200 -
INFO:WebApp:Assignment started for reads_simulated_0_1perc_R2.fastq
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:13:52] "[37mPOST /species HTTP/1.1[0m" 200 -
INFO:WebApp:Assignment done for files/634d0beedc3528f7reads_simulated_0_1perc_R2.fastq.txt, Time needed: 8.63
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:14:03] "[32mGET /assignspec HTTP/1.1[0m" 302 -
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:14:05] "[37mGET /resultsspec HTTP/1.1[0m" 200 -
INFO:WebApp:Assignment started for reads_simulated_0_1perc_R2.fastq
INFO:werkzeug:127.0.0.1 - - [19/Nov/2022 17:14:46] "[37mPOST /species HTTP/1.1[0m" 200 -
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INFO:WebApp:Assignment started for GCF_000367865.1_Acin_calc_NIPH_13_V1_genomic.fna
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INFO:WebApp:Assignment done for files/96df4a30d413c342GCF_000367865.1_Acin_calc_NIPH_13_V1_genomic.fna.txt, Time needed: 3.76
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INFO:WebApp:Assignment done for files/a2267f2458f48128genomic.fna.txt, Time needed: 2.55
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INFO:WebApp:Assignment started for genomic.fna
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INFO:WebApp:Assignment started for genomic.fna
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INFO:WebApp:Assignment started for genomic.fna
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INFO:WebApp:Assignment started for genomic.fna
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INFO:WebApp:Assignment started for genomic.fna
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INFO:werkzeug: * Detected change in 'F:\\project\\XspecT-GitHub\\XspecT-main\\search_filter.py', reloading
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INFO:werkzeug: * Debugger PIN: 140-607-571
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INFO:WebApp:Assignment started for genomic.fna
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INFO:werkzeug: * Debugger PIN: 140-607-571
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INFO:WebApp:Assignment done for files/514585d44632b209genomic.fna.txt, Time needed: 4.27
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INFO:WebApp:Assignment done for files/55b2b60add0f2d38genomic.fna.txt, Time needed: 5.49
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INFO:WebApp:Assignment done for files/0e10ccf135737436genomic.fna.txt, Time needed: 5.33
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INFO:werkzeug: * Detected change in 'F:\\project\\XspecT-GitHub\\XspecT-main\\search_filter.py', reloading
INFO:werkzeug: * Restarting with stat
WARNING:werkzeug: * Debugger is active!
INFO:werkzeug: * Debugger PIN: 140-607-571
INFO:werkzeug: * Running on http://0.0.0.0:5000/ (Press CTRL+C to quit)
INFO:werkzeug:127.0.0.1 - - [09/Jan/2023 16:19:01] "[32mGET / HTTP/1.1[0m" 302 -
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INFO:werkzeug:127.0.0.1 - - [09/Jan/2023 16:20:00] "[37mGET /species HTTP/1.1[0m" 200 -
INFO:WebApp:Assignment started for genomic.fna
INFO:werkzeug:127.0.0.1 - - [09/Jan/2023 16:20:14] "[37mPOST /species HTTP/1.1[0m" 200 -
INFO:WebApp:Assignment done for files/ecdccd1b260e1e1agenomic.fna.txt, Time needed: 4.55
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INFO:werkzeug: * Detected change in 'F:\\project\\XspecT-GitHub\\XspecT-main\\search_filter.py', reloading
INFO:werkzeug: * Restarting with stat
WARNING:werkzeug: * Debugger is active!
INFO:werkzeug: * Debugger PIN: 140-607-571
INFO:werkzeug: * Running on http://0.0.0.0:5000/ (Press CTRL+C to quit)
INFO:werkzeug:127.0.0.1 - - [09/Jan/2023 16:25:19] "[32mGET / HTTP/1.1[0m" 302 -
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INFO:WebApp:Assignment started for genomic.fna
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