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calkan edited this page Oct 30, 2014
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mrFAST is designed to map short reads generated with the Illumina platform to reference genome assemblies; in a fast and memory-efficient manner.
- Currently supported features: ** Output in SAM format ** Indels up to 8 bp (4 bp deletions and 4 bp insertions) ** Paired-end mapping ***Discordant option to generate mapping file ready for VariationHunter to detect structural variants. ** One end anchored (OEA) map locations for novel sequence insertion detection with NovelSeq ** Matepair library mapping (long inserts with RF orientation).
- Implemented, not-yet-released features: ** Multithreading