Run pipeline to generate MSA from structure only without alignment

[Justice-Lu]

I have a series of .pdb files that's already aligned and saved via tmalign. I'm trying to run the pipeline to generate a MSA from structure alignment. While I see a 'route' for such analysis via the schematic diagram, I don't see an option to disable T-Coffee.

Can you please point me in the right direction to do so ??

Thanks,