From 8f7a9e66f9057e1d44520fb24b1bea071fe0c9ee Mon Sep 17 00:00:00 2001 From: IgorRodchenkov Date: Sat, 18 May 2024 16:07:23 -0400 Subject: [PATCH] Updated README.md --- README.md | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 3db688765..5ea98decc 100644 --- a/README.md +++ b/README.md @@ -46,7 +46,9 @@ $ paxtools help * Older BioPAX [snapshots](http://www.biopax.org/m2repo/snapshots/) and [releases](http://www.biopax.org/m2repo/releases/) Maven2 repository * [Downloads](http://www.biopax.org/downloads/paxtools/) -More information about Paxtools can be found in [the publication](http://dx.plos.org/10.1371/journal.pcbi.1003194), [wiki archive](http://www.biopax.org/mediawiki/index.php/Paxtools), and [BioPAX forum](https://groups.google.com/d/msg/biopax-discuss/zwtwDG23T1E/Vu1OK7iXBQAJ). +More information about Paxtools can be found in [the publication](http://dx.plos.org/10.1371/journal.pcbi.1003194), +[wiki archive](http://www.biopax.org/mediawiki/index.php/Paxtools), and +[BioPAX forum](https://groups.google.com/d/msg/biopax-discuss/zwtwDG23T1E/Vu1OK7iXBQAJ). (_TODO_: move the Paxtools description here and deprecate that wiki soon.) @@ -54,7 +56,7 @@ More information about Paxtools can be found in [the publication](http://dx.plos To build or use with a modern JDK (>11), e.g., OpenJDK-19, additional java options are required: ```bash -export _JAVA_OPTIONS="--add-opens=java.base/java.lang=ALL-UNNAMED --add-opens=java.base/java.lang.reflect=ALL-UNNAMED" +export JDK_JAVA_OPTIONS="--add-opens=java.base/java.lang=ALL-UNNAMED --add-opens=java.base/java.lang.reflect=ALL-UNNAMED" ``` (can also add to the java command args)