Error in GDCQuery_clinic("TCGA-PAAD")

[ramyapurkanti]

Hello,

I have the version 2.32.0 installed. When I run the command paad_clinical <- GDCquery_clinic("TCGA-PAAD"), I get the following error:
Error in set(x, j = name, value = value) :
Supplied 185 items to be assigned to 318 items of column 'submitter_id'. If you wish to 'recycle' the RHS please use rep() to make this intent clear to readers of your code.

It was working a month back. In order to check whether the error is specific to TCGA-PAAD, I also ran it for TCGA-OV and got similar error
Error in set(x, j = name, value = value) :
Supplied 608 items to be assigned to 1130 items of column 'submitter_id'. If you wish to 'recycle' the RHS please use rep() to make this intent clear to readers of your code.

Did something change recently in the package?

Thanks,
Ramya

Update1: Updating the version to 2.34.0 doesn't solve it

[tiagochst]

Hi, 

There was a change in GDC database.
I still did not evaluate the changes in the data but some users said there was a change in the days_to_followup field.

Could you please install from Github
remotes::install_github("https://github.com/BioinformaticsFMRP/TCGAbiolinks",ref = "devel")

The last development version should be working.

[ramyapurkanti]

Thank you so much for the prompt response! Apologies for not finding the older threads before posting. When I installed the dev version, and load the package, I get the following warning:
In readRDS(path) : error reading from connection

Everything works though and am able to load clinical data now.

Thank you,
Ramya

[ramyapurkanti]

Hello again,

Spoke too soon, it has NA values for many date related fields. I will join the other thread discussing this issue instead of duplicating it.

Thanks,
Ramya