test_user_gen_config.json

{
    "FILES" : [
        {
            "COLUMNS" : [
                {
                    "NAME"  : "SAMPID",
                    "TYPE"  : "STRING",
                    "INDEX" : 1,
                    "MAP_TO" : "SampleBarcode"
                },
                {
                    "NAME"  : "SMTS",
                    "TYPE"  : "STRING",
                    "INDEX" : 2
                },
                {
                    "NAME"  : "SMTSD",
                    "TYPE"  : "STRING",
                    "INDEX" : 3
                },
                {
                    "NAME"  : "SMUBRID",
                    "TYPE"  : "STRING",
                    "INDEX" : 4
                },
                {
                    "NAME"  : "SMNABTCH",
                    "TYPE"  : "STRING",
                    "INDEX" : 5
                },
                {
                    "NAME"  : "SMNABTCHT",
                    "TYPE"  : "STRING",
                    "INDEX" : 6
                },
                {
                    "NAME"  : "SMGEBTCH",
                    "TYPE"  : "STRING",
                    "INDEX" : 7
                }
            ],
            "FILENAME" : "isb-cgc-dev/phyliss/GTEx_subset_SampleAttributes.txt",
            "PLATFORM" : "platform",
            "PIPELINE" : "pipeline",
            "DATATYPE" : "user_gen"
        },
        {
            "COLUMNS" : [
                {
                    "NAME"  : "SUBJID",
                    "TYPE"  : "STRING",
                    "INDEX" : 1,
                    "MAP_TO" : "SampleBarcode"
                },
                {
                    "NAME"  : "GENDER",
                    "TYPE"  : "INTEGER",
                    "INDEX" : 2
                },
                {
                    "NAME"  : "AGE",
                    "TYPE"  : "STRING",
                    "INDEX" : 3
                },
                {
                    "NAME"  : "DTHHRDY",
                    "TYPE"  : "INTEGER",
                    "INDEX" : 4
                }
            ],
            "FILENAME" : "isb-cgc-dev/phyliss/GTEx_subset_SubjectPhenotypesDS.txt",
            "PLATFORM" : "platform1",
            "PIPELINE" : "pipeline1",
            "DATATYPE" : "user_gen"
        }
    ],
    "USER_METADATA_TABLES": {
        "METADATA_DATA" : "user_metadata_1_1",
        "METADATA_SAMPLES" : "user_metadata_samples_1_1",
        "FEATURE_DEFS": "user_feature_defs_1_1"
    },
    "USER_PROJECT" : 1,
    "STUDY" : 1,
    "BUCKET" : "isb-cgc-dev",
    "GOOGLE_PROJECT" : "isb-cgc",
    "BIGQUERY_DATASET" : "test"
}