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Boehringer-Ingelheim · Jul 3, 2024 · 1944019 · 1944019
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diff --git a/.nojekyll b/.nojekyll
@@ -1 +1 @@
-f7e1879c
+1da42e61
diff --git a/index.html b/index.html
@@ -2,7 +2,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
 
 <meta charset="utf-8">
-<meta name="generator" content="quarto-1.4.555">
+<meta name="generator" content="quarto-1.5.53">
 
 <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
 
@@ -83,7 +83,7 @@
     </a>
   </div>
             <div id="quarto-search" class="" title="Search"></div>
-          <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarCollapse" aria-controls="navbarCollapse" aria-expanded="false" aria-label="Toggle navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
+          <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarCollapse" aria-controls="navbarCollapse" role="menu" aria-expanded="false" aria-label="Toggle navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
   <span class="navbar-toggler-icon"></span>
 </button>
           <div class="collapse navbar-collapse" id="navbarCollapse">
@@ -94,7 +94,7 @@
   </li>  
 </ul>
           </div> <!-- /navcollapse -->
-          <div class="quarto-navbar-tools">
+            <div class="quarto-navbar-tools">
 </div>
       </div> <!-- /container-fluid -->
     </nav>
@@ -130,20 +130,13 @@ <h1 class="title">DaVinCI</h1>
 <h2 class="anchored" data-anchor-id="dynamic-visualization-for-clinical-insights">Dynamic Visualization for Clinical Insights</h2>
 <section id="what-is-davinci" class="level3">
 <h3 class="anchored" data-anchor-id="what-is-davinci">What is DaVinCI?</h3>
-<!-- ::: columns -->
-<!-- ::: {.column width="20%"} -->
-<!-- <!-- ![](quarto/images/davinci_hex.png){width="150"} -->
-<!-- ::: -->
-<!-- ::: {.column width="80%"} -->
 <p>DaVinCI offers R/Shiny based tools to review, aggregate and visualize data arising from clinical trials, supporting the goal of developing and delivering safe and effective treatments for patients. However, instead of creating entire R/Shiny applications, DaVinCI provides individual modules. Modules are functional building blocks that can be linked together into customized apps. This customization enables App Creators to build their own app according to trial-specific needs without deep R knowledge.</p>
-<!-- ::: -->
-<!-- ::: -->
 </section>
 <section id="our-commitment-and-contribution-to-open-source" class="level3">
 <h3 class="anchored" data-anchor-id="our-commitment-and-contribution-to-open-source">Our commitment and contribution to open-source</h3>
 <p>DaVinCI software development including the codebase will be made fully open-source, which will allow you to use or co-develop DaVinCI.<br>
 Our initial open-source release is planned by <strong>Q3-2024!</strong><br>
-Don’t miss our release and other DaVinCI related news, and join the <a href="https://www.linkedin.com/groups/13052407/" target="_blank">DaVinCI LinkedIn group</a> today!</p>
+Don’t miss our release and other DaVinCI related news, and connect with our Product Owner <a href="https://www.linkedin.com/in/stefan-d%C3%B6ring-6134a595/" target="_blank">Stefan Doering</a> on LinkedIn!</p>
 
 
 </section>
@@ -185,18 +178,7 @@ <h3 class="anchored" data-anchor-id="our-commitment-and-contribution-to-open-sou
     }
     return false;
   }
-  const clipboard = new window.ClipboardJS('.code-copy-button', {
-    text: function(trigger) {
-      const codeEl = trigger.previousElementSibling.cloneNode(true);
-      for (const childEl of codeEl.children) {
-        if (isCodeAnnotation(childEl)) {
-          childEl.remove();
-        }
-      }
-      return codeEl.innerText;
-    }
-  });
-  clipboard.on('success', function(e) {
+  const onCopySuccess = function(e) {
     // button target
     const button = e.trigger;
     // don't keep focus
@@ -228,15 +210,37 @@ <h3 class="anchored" data-anchor-id="our-commitment-and-contribution-to-open-sou
     }, 1000);
     // clear code selection
     e.clearSelection();
+  }
+  const getTextToCopy = function(trigger) {
+      const codeEl = trigger.previousElementSibling.cloneNode(true);
+      for (const childEl of codeEl.children) {
+        if (isCodeAnnotation(childEl)) {
+          childEl.remove();
+        }
+      }
+      return codeEl.innerText;
+  }
+  const clipboard = new window.ClipboardJS('.code-copy-button:not([data-in-quarto-modal])', {
+    text: getTextToCopy
   });
+  clipboard.on('success', onCopySuccess);
+  if (window.document.getElementById('quarto-embedded-source-code-modal')) {
+    // For code content inside modals, clipBoardJS needs to be initialized with a container option
+    // TODO: Check when it could be a function (https://github.com/zenorocha/clipboard.js/issues/860)
+    const clipboardModal = new window.ClipboardJS('.code-copy-button[data-in-quarto-modal]', {
+      text: getTextToCopy,
+      container: window.document.getElementById('quarto-embedded-source-code-modal')
+    });
+    clipboardModal.on('success', onCopySuccess);
+  }
     var localhostRegex = new RegExp(/^(?:http|https):\/\/localhost\:?[0-9]*\//);
     var mailtoRegex = new RegExp(/^mailto:/);
       var filterRegex = new RegExp("https:\/\/Boehringer-Ingelheim\.github\.io\/davinci\/");
     var isInternal = (href) => {
         return filterRegex.test(href) || localhostRegex.test(href) || mailtoRegex.test(href);
     }
     // Inspect non-navigation links and adorn them if external
- 	var links = window.document.querySelectorAll('a[href]:not(.nav-link):not(.navbar-brand):not(.toc-action):not(.sidebar-link):not(.sidebar-item-toggle):not(.pagination-link):not(.no-external):not([aria-hidden]):not(.dropdown-item):not(.quarto-navigation-tool)');
+ 	var links = window.document.querySelectorAll('a[href]:not(.nav-link):not(.navbar-brand):not(.toc-action):not(.sidebar-link):not(.sidebar-item-toggle):not(.pagination-link):not(.no-external):not([aria-hidden]):not(.dropdown-item):not(.quarto-navigation-tool):not(.about-link)');
     for (var i=0; i<links.length; i++) {
       const link = links[i];
       if (!isInternal(link.href)) {

diff --git a/search.json b/search.json
@@ -4,13 +4,13 @@
     "href": "index.html",
     "title": "DaVinCI",
     "section": "",
-    "text": "DaVinCI offers R/Shiny based tools to review, aggregate and visualize data arising from clinical trials, supporting the goal of developing and delivering safe and effective treatments for patients. However, instead of creating entire R/Shiny applications, DaVinCI provides individual modules. Modules are functional building blocks that can be linked together into customized apps. This customization enables App Creators to build their own app according to trial-specific needs without deep R knowledge.\n\n\n\n\n\nDaVinCI software development including the codebase will be made fully open-source, which will allow you to use or co-develop DaVinCI.\nOur initial open-source release is planned by Q3-2024!\nDon’t miss our release and other DaVinCI related news, and join the DaVinCI LinkedIn group today!"
+    "text": "DaVinCI offers R/Shiny based tools to review, aggregate and visualize data arising from clinical trials, supporting the goal of developing and delivering safe and effective treatments for patients. However, instead of creating entire R/Shiny applications, DaVinCI provides individual modules. Modules are functional building blocks that can be linked together into customized apps. This customization enables App Creators to build their own app according to trial-specific needs without deep R knowledge.\n\n\n\nDaVinCI software development including the codebase will be made fully open-source, which will allow you to use or co-develop DaVinCI.\nOur initial open-source release is planned by Q3-2024!\nDon’t miss our release and other DaVinCI related news, and connect with our Product Owner Stefan Doering on LinkedIn!"
   },
   {
     "objectID": "index.html#dynamic-visualization-for-clinical-insights",
     "href": "index.html#dynamic-visualization-for-clinical-insights",
     "title": "DaVinCI",
     "section": "",
-    "text": "DaVinCI offers R/Shiny based tools to review, aggregate and visualize data arising from clinical trials, supporting the goal of developing and delivering safe and effective treatments for patients. However, instead of creating entire R/Shiny applications, DaVinCI provides individual modules. Modules are functional building blocks that can be linked together into customized apps. This customization enables App Creators to build their own app according to trial-specific needs without deep R knowledge.\n\n\n\n\n\nDaVinCI software development including the codebase will be made fully open-source, which will allow you to use or co-develop DaVinCI.\nOur initial open-source release is planned by Q3-2024!\nDon’t miss our release and other DaVinCI related news, and join the DaVinCI LinkedIn group today!"
+    "text": "DaVinCI offers R/Shiny based tools to review, aggregate and visualize data arising from clinical trials, supporting the goal of developing and delivering safe and effective treatments for patients. However, instead of creating entire R/Shiny applications, DaVinCI provides individual modules. Modules are functional building blocks that can be linked together into customized apps. This customization enables App Creators to build their own app according to trial-specific needs without deep R knowledge.\n\n\n\nDaVinCI software development including the codebase will be made fully open-source, which will allow you to use or co-develop DaVinCI.\nOur initial open-source release is planned by Q3-2024!\nDon’t miss our release and other DaVinCI related news, and connect with our Product Owner Stefan Doering on LinkedIn!"
   }
 ]
diff --git a/site_libs/bootstrap/bootstrap.min.css b/site_libs/bootstrap/bootstrap.min.css
diff --git a/site_libs/quarto-html/quarto-syntax-highlighting.css b/site_libs/quarto-html/quarto-syntax-highlighting.css
diff --git a/site_libs/quarto-html/quarto.js b/site_libs/quarto-html/quarto.js
@@ -94,7 +94,7 @@ window.document.addEventListener("DOMContentLoaded", function (_event) {
       if (link.href.indexOf("#") !== -1) {
         const anchor = link.href.split("#")[1];
         const heading = window.document.querySelector(
-          `[data-anchor-id=${anchor}]`
+          `[data-anchor-id="${anchor}"]`
         );
         if (heading) {
           // Add the class
@@ -134,8 +134,10 @@ window.document.addEventListener("DOMContentLoaded", function (_event) {
       window.innerHeight + window.pageYOffset >=
       window.document.body.offsetHeight
     ) {
+      // This is the no-scroll case where last section should be the active one
       sectionIndex = 0;
     } else {
+      // This finds the last section visible on screen that should be made active
       sectionIndex = [...sections].reverse().findIndex((section) => {
         if (section) {
           return window.pageYOffset >= section.offsetTop - sectionMargin;
@@ -317,6 +319,7 @@ window.document.addEventListener("DOMContentLoaded", function (_event) {
           for (const child of el.children) {
             child.style.opacity = 0;
             child.style.overflow = "hidden";
+            child.style.pointerEvents = "none";
           }
 
           nexttick(() => {
@@ -358,6 +361,7 @@ window.document.addEventListener("DOMContentLoaded", function (_event) {
 
               const clone = child.cloneNode(true);
               clone.style.opacity = 1;
+              clone.style.pointerEvents = null;
               clone.style.display = null;
               toggleContents.append(clone);
             }
@@ -432,6 +436,7 @@ window.document.addEventListener("DOMContentLoaded", function (_event) {
           for (const child of el.children) {
             child.style.opacity = 1;
             child.style.overflow = null;
+            child.style.pointerEvents = null;
           }
 
           const placeholderEl = window.document.getElementById(
@@ -739,6 +744,7 @@ window.document.addEventListener("DOMContentLoaded", function (_event) {
     // Process the collapse state if this is an UL
     if (el.tagName === "UL") {
       if (tocOpenDepth === -1 && depth > 1) {
+        // toc-expand: false
         el.classList.add("collapse");
       } else if (
         depth <= tocOpenDepth ||
@@ -757,10 +763,9 @@ window.document.addEventListener("DOMContentLoaded", function (_event) {
   };
 
   // walk the TOC and expand / collapse any items that should be shown
-
   if (tocEl) {
-    walk(tocEl, 0);
     updateActiveLink();
+    walk(tocEl, 0);
   }
 
   // Throttle the scroll event and walk peridiocally
@@ -779,6 +784,10 @@ window.document.addEventListener("DOMContentLoaded", function (_event) {
   window.addEventListener(
     "resize",
     throttle(() => {
+      if (tocEl) {
+        updateActiveLink();
+        walk(tocEl, 0);
+      }
       if (!isReaderMode()) {
         hideOverlappedSidebars();
       }

diff --git a/site_libs/quarto-nav/quarto-nav.js b/site_libs/quarto-nav/quarto-nav.js
@@ -5,9 +5,45 @@ const headroomChanged = new CustomEvent("quarto-hrChanged", {
   composed: false,
 });
 
+const announceDismiss = () => {
+  const annEl = window.document.getElementById("quarto-announcement");
+  if (annEl) {
+    annEl.remove();
+
+    const annId = annEl.getAttribute("data-announcement-id");
+    window.localStorage.setItem(`quarto-announce-${annId}`, "true");
+  }
+};
+
+const announceRegister = () => {
+  const annEl = window.document.getElementById("quarto-announcement");
+  if (annEl) {
+    const annId = annEl.getAttribute("data-announcement-id");
+    const isDismissed =
+      window.localStorage.getItem(`quarto-announce-${annId}`) || false;
+    if (isDismissed) {
+      announceDismiss();
+      return;
+    } else {
+      annEl.classList.remove("hidden");
+    }
+
+    const actionEl = annEl.querySelector(".quarto-announcement-action");
+    if (actionEl) {
+      actionEl.addEventListener("click", function (e) {
+        e.preventDefault();
+        // Hide the bar immediately
+        announceDismiss();
+      });
+    }
+  }
+};
+
 window.document.addEventListener("DOMContentLoaded", function () {
   let init = false;
 
+  announceRegister();
+
   // Manage the back to top button, if one is present.
   let lastScrollTop = window.pageYOffset || document.documentElement.scrollTop;
   const scrollDownBuffer = 5;

diff --git a/site_libs/quarto-search/quarto-search.js b/site_libs/quarto-search/quarto-search.js
@@ -1275,7 +1275,11 @@ async function fuseSearch(query, fuse, fuseOptions) {
 
   // If we don't have a subfuse and the query is long enough, go ahead
   // and create a subfuse to use for subsequent queries
-  if (now - then > kFuseMaxWait && subSearchFuse === undefined) {
+  if (
+    now - then > kFuseMaxWait &&
+    subSearchFuse === undefined &&
+    resultsRaw.length < fuseOptions.limit
+  ) {
     subSearchTerm = query;
     subSearchFuse = new window.Fuse([], kFuseIndexOptions);
     resultsRaw.forEach((rr) => {

diff --git a/sitemap.xml b/sitemap.xml
@@ -2,6 +2,6 @@
 <urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9">
   <url>
     <loc>https://Boehringer-Ingelheim.github.io/davinci/index.html</loc>
-    <lastmod>2024-06-21T08:10:47.541Z</lastmod>
+    <lastmod>2024-07-03T12:20:26.537Z</lastmod>
   </url>
 </urlset>