Only version 2.0.7- can be pulled from bioconductor

[pwwang]

I still kept scRepertoire as a remote dependency for scplotter because v2.1+ can not be pulled by BiocManager::install() (by default?).

R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Platform: x86_64-conda-linux-gnu (64-bit)

r$> BiocManager::install("scRepertoire", force = TRUE)
Bioconductor version 3.19 (BiocManager 1.30.25), R 4.4.1 (2024-06-14)
Installing package(s) 'scRepertoire'
trying URL 'https://bioconductor.org/packages/3.19/bioc/src/contrib/scRepertoire_2.0.7.tar.gz'
Content type 'application/gzip' length 21676373 bytes (20.7 MB)
==================^C=============^C====^C===^C====^C====^C===^C=
downloaded 20.7 MB

I also tried R 4.3 and upgraded BiocManager.

Any ideas?

BTW, glad to see the manuscript drafted for v2.

[ncborcherding]

It looks like you are pulling biocManager 3.19 which will be not pull the correct scRepertoire version - you will need to pull using the 3.20 release (which the current version is 2.2.1 and should have all the fixes for scplotter).

More info here: https://bioconductor.org/packages/release/bioc/html/scRepertoire.html

Keep me updated with scplotter and I will make sure to update the citation/manuscript to reflect things.

Nick