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config_cmaq_cyclecloud_hdf5.csh
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#!/bin/csh -f
# ================= CMAQv5.3.X Configuration Script ================= #
# Requirements: I/O API & netCDF libraries #
# PGI, Intel, or Gnu Fortran compiler #
# MPICH for multiprocessor computing #
# Optional: Git for GitHub source code repository #
# #
# Note that this script was configured/tested on Red Hat Linux O/S #
# #
# To report problems or request help with this script/program: #
# http://www.cmascenter.org/help-desk.cfm #
# =================================================================== #
#> Critical Folder Locations
# CMAQ_HOME - this is where the config_cmaq.csh script is located. It
# is also the root directory for all the executables. It may include
# the repository if the user is building CMAQ inside the repository. It
# may, on the other hand, be outside the repository if the user has
# created a separate project directory where they wish to put build-
# and run-scripts as well as executables.
setenv CMAQ_HOME $cwd
setenv BUILD /shared/build-hdf5
# CMAQ_REPO - this is always the location of the CMAQ repository that
# the user will pull from to create exectuables. If the user is building
# CMAQ inside the repository then it will be equal to CMAQ_HOME. If not,
# the user must supply an alternative folder locaiton.
setenv CMAQ_REPO $BUILD/CMAQ_REPO_v533
# CMAQ_DATA - this may be where the input data are located. It may be a
# symbolic link to another location on the system, but it should be
# provided here
setenv CMAQ_DATA $CMAQ_HOME/data
if ( ! -d $CMAQ_DATA ) mkdir -p $CMAQ_DATA
cd $CMAQ_HOME
#===============================================================================
#> architecture & compiler specific settings
#===============================================================================
#> Set the compiler option
if ( $#argv == 1 ) then
#> Use the user's input to set the compiler parameter
setenv compiler $1
setenv compilerVrsn Empty
else if ( $#argv == 2 ) then
#> Compiler Name and Version have been provided
setenv compiler $1
setenv compilerVrsn $2
else if ( $#argv == 0 ) then
#> If config.cmaq is called from Bldit.cctm or run.cctm, then this
#> variable is already defined
if ( ! $?compiler ) then
echo "Error: 'compiler' should be set either in the"
echo " environment or as input to config.cmaq"
echo " Example:> ./config.cmaq [compiler]"
echo " Options: intel | gcc | pgi"
exit
else if ( ! $?compilerVrsn ) then
setenv compilerVrsn Empty
endif
else
#> More than two inputs were given. Exit this script just to
#> be on the safe side.
echo "Error: Too many inputs to config.cmaq. This script"
echo " is expecting one input (the name of the"
echo " desired compiler. In some installations, you "
echo " may also be able to specify the compiler version "
echo " as the second input, but this is not by default."
exit
endif
echo "Compiler is set to $compiler"
#> Compiler flags and settings
switch ( $compiler )
#> Intel fortran compiler......................................................
case intel:
#> I/O API and netCDF root
setenv NCDIR netcdf_c_directory_path
setenv NFDIR netcdf_f_directory_path
setenv NETCDF netcdf_combined_directory_path # Note only for WRF-CMAQ as it requires combining the netcdf C and netcdf F into a single directory. CMAQ users - don't change this setting
setenv IOAPI ioapi_root_intel
setenv WRF_ARCH 15 # [1-75] Optional, ONLY for WRF-CMAQ
#> I/O API, netCDF, and MPI library locations
setenv IOAPI_INCL_DIR ${IOAPI}/ioapi_inc_intel #> I/O API include header files
setenv IOAPI_LIB_DIR ${IOAPI}/ioapi_lib_intel #> I/O API libraries
if ( $NETCDF == "netcdf_combined_directory_path" ) then
setenv NETCDF_LIB_DIR ${NCDIR}/lib #> netCDF C directory path
setenv NETCDF_INCL_DIR ${NCDIR}/include #> netCDF C directory path
setenv NETCDFF_LIB_DIR ${NFDIR}/lib #> netCDF Fortran directory path
setenv NETCDFF_INCL_DIR ${NFDIR}/include #> netCDF Fortran directory path
endif
setenv MPI_INCL_DIR mpi_incl_intel #> MPI Include directory path
setenv MPI_LIB_DIR mpi_lib_intel #> MPI Lib directory path
#> Compiler Aliases and Flags
#> set the compiler flag -qopt-report=5 to get a model optimization report in the build directory with the optrpt extension
setenv myFC mpiifort
setenv myCC icc
setenv myFSTD "-O3 -fno-alias -mp1 -fp-model source -ftz -simd -align all -xHost -vec-guard-write -unroll-aggressive"
setenv myDBG "-O0 -g -check bounds -check uninit -fpe0 -fno-alias -ftrapuv -traceback"
setenv myLINK_FLAG -qopenmp # openMP may be required if I/O API was built using this link flag.
setenv myFFLAGS "-fixed -132"
setenv myFRFLAGS "-free"
setenv myCFLAGS "-O2"
setenv extra_lib ""
breaksw
#> Portland Group fortran compiler.............................................
case pgi:
#> I/O API and netCDF for WRF-CMAQ
setenv IOAPI ioapi_root_pgi
setenv NCDIR netcdf_c_directory_path
setenv NFDIR netcdf_f_directory_path
setenv NETCDF netcdf_combined_directory_path # Note only for WRF-CMAQ as it requires combining the netcdf C and netcdf F into a single directory. CMAQ users - don't change this setting
setenv WRF_ARCH 3 # [1-75] Optional, ONLY for WRF-CMAQ
#> I/O API, netCDF, and MPI library locations
setenv IOAPI_INCL_DIR ${IOAPI}/iopai_inc_pgi #> I/O API include header files
setenv IOAPI_LIB_DIR ${IOAPI}/ioapi_lib_pgi #> I/O API libraries
if ( $NETCDF == "netcdf_combined_directory_path" ) then
setenv NETCDF_LIB_DIR ${NCDIR}/lib #> netCDF C directory path
setenv NETCDF_INCL_DIR ${NCDIR}/include #> netCDF C directory path
setenv NETCDFF_LIB_DIR ${NFDIR}/lib #> netCDF Fortran directory path
setenv NETCDFF_INCL_DIR ${NFDIR}/include #> netCDF Fortran directory path
setenv MPI_INCL_DIR mpi_incl_pgi #> MPI Include directory path
setenv MPI_LIB_DIR mpi_lib_pgi #> MPI Lib directory path
endif
#> Compiler Aliases and Flags
setenv myFC mpifort
setenv myCC pgcc
setenv myLINK_FLAG # "-mp" openMP may be required if I/O API was built using this link flag.
setenv myFSTD "-O3"
setenv myDBG "-O0 -g -Mbounds -Mchkptr -traceback -Ktrap=fp"
setenv myFFLAGS "-Mfixed -Mextend -mcmodel=medium -tp px"
setenv myFRFLAGS "-Mfree -Mextend -mcmodel=medium -tp px"
setenv myCFLAGS "-O2"
setenv extra_lib ""
breaksw
#> gfortran compiler............................................................
case gcc:
#> I/O API, netCDF, and MPI library locations
setenv IOAPI_INCL_DIR $BUILD/ioapi-3.2_branch_20200828/ioapi/fixed_src #> I/O API include header files
setenv IOAPI_LIB_DIR $BUILD/ioapi-3.2_branch_20200828/Linux2_x86_64gfortmpi #> I/O API libraries
setenv NETCDF_LIB_DIR $BUILD/install/lib #> netCDF C directory path
setenv NETCDF_INCL_DIR $BUILD/install/include #> netCDF C directory path
setenv NETCDFF_LIB_DIR $BUILD/install/lib #> netCDF Fortran directory path
setenv NETCDFF_INCL_DIR $BUILD/install/include #> netCDF Fortran directory path
#> I/O API and netCDF for WRF-CMAQ
setenv NCDIR $BUILD/install # C netCDF install path
setenv NFDIR $BUILD/install # Fortran netCDF install path for CMAQ
setenv NETCDF netcdf_combined_directory_path # Note only for WRF-CMAQ as it requires combining the netcdf C and netcdf F into a single directory. CMAQ users - don't change this setting
setenv IOAPI $BUILD/ioapi-3.2_branch_20200828/ # I/O API
setenv WRF_ARCH 34 # [1-75] Optional, ONLY for WRF-CMAQ
#> I/O API, netCDF, and MPI library locations
setenv IOAPI_INCL_DIR ${IOAPI}/ioapi/fixed_src #> I/O API include header files
setenv IOAPI_LIB_DIR ${IOAPI}/Linux2_x86_64gfortmpi #> I/O API libraries
if ( $NETCDF == "netcdf_combined_directory_path" ) then
setenv NETCDF_LIB_DIR ${NCDIR}/lib #> netCDF C directory path
setenv NETCDF_INCL_DIR ${NCDIR}/include #> netCDF C directory path
setenv NETCDFF_LIB_DIR ${NFDIR}/lib #> netCDF Fortran directory path
setenv NETCDFF_INCL_DIR ${NFDIR}/include #> netCDF Fortran directory path
endif
setenv MPI_INCL_DIR /opt/hpcx-v2.9.0-gcc-MLNX_OFED_LINUX-5.4-1.0.3.0-redhat8.4-x86_64/ompi/include #> MPI Include directory path
setenv MPI_LIB_DIR /opt/hpcx-v2.9.0-gcc-MLNX_OFED_LINUX-5.4-1.0.3.0-redhat8.4-x86_64/ompi/lib #> MPI Lib directory path
#> Compiler Aliases and Flags
#> set the compiler flag -fopt-info-missed to generate a missed optimization report in the bldit logfile
setenv myFC mpifort
setenv myCC gcc
setenv myFSTD "-O3 -funroll-loops -finit-character=32 -Wtabs -Wsurprising -march=native -ftree-vectorize -ftree-loop-if-convert -finline-limit=512"
setenv myDBG "-Wall -O0 -g -fcheck=all -ffpe-trap=invalid,zero,overflow -fbacktrace"
setenv myFFLAGS "-ffixed-form -ffixed-line-length-132 -funroll-loops -finit-character=32"
setenv myFRFLAGS "-ffree-form -ffree-line-length-none -funroll-loops -finit-character=32"
setenv myCFLAGS "-O2"
setenv myLINK_FLAG # "-fopenmp" # openMP may be required if I/O API was built using this link flag.
setenv extra_lib ""
breaksw
default:
echo "*** Compiler $compiler not found"
exit(2)
breaksw
endsw
#> Apply Specific Module and Library Location Settings for those working inside EPA
# source /work/MOD3DEV/cmaq_common/cmaq_env.csh #>>> UNCOMMENT if at EPA
#> Add The Complier Version Number to the Compiler String if it's not empty
setenv compilerString ${compiler}
if ( $compilerVrsn != "Empty" ) then
setenv compilerString ${compiler}${compilerVrsn}
endif
#===============================================================================
#> I/O API, netCDF, and MPI libraries
setenv netcdf_lib "-lnetcdf" #> -lnetcdff -lnetcdf for netCDF v4.2.0 and later
setenv netcdff_lib "-lnetcdff"
setenv ioapi_lib "-lioapi"
setenv pnetcdf_lib "-lpnetcdf"
setenv mpi_lib "-lmpi" #> -lmpich or -lmvapich
#> Query System Info and Current Working Directory
setenv system "`uname -m`"
setenv bld_os "`uname -s``uname -r | cut -d. -f1`"
setenv lib_basedir $CMAQ_HOME/lib
#> Generate Library Locations
setenv CMAQ_LIB ${lib_basedir}/${system}/${compilerString}
setenv MPI_DIR $CMAQ_LIB/mpi
setenv NETCDF_DIR $CMAQ_LIB/netcdf
setenv NETCDFF_DIR $CMAQ_LIB/netcdff
setenv PNETCDF_DIR $CMAQ_LIB/pnetcdf
setenv IOAPI_DIR $CMAQ_LIB/ioapi
#> Create Symbolic Links to Libraries
if ( ! -d $CMAQ_LIB ) mkdir -p $CMAQ_LIB
if ( -e $MPI_DIR ) rm -rf $MPI_DIR
mkdir $MPI_DIR
ln -s $MPI_LIB_DIR $MPI_DIR/lib
ln -s $MPI_INCL_DIR $MPI_DIR/include
if ( ! -d $NETCDF_DIR ) mkdir $NETCDF_DIR
if ( ! -e $NETCDF_DIR/lib ) ln -sfn $NETCDF_LIB_DIR $NETCDF_DIR/lib
if ( ! -e $NETCDF_DIR/include ) ln -sfn $NETCDF_INCL_DIR $NETCDF_DIR/include
if ( ! -d $NETCDFF_DIR ) mkdir $NETCDFF_DIR
if ( ! -e $NETCDFF_DIR/lib ) ln -sfn $NETCDFF_LIB_DIR $NETCDFF_DIR/lib
if ( ! -e $NETCDFF_DIR/include ) ln -sfn $NETCDFF_INCL_DIR $NETCDFF_DIR/include
if ( ! -d $IOAPI_DIR ) then
mkdir $IOAPI_DIR
ln -sfn $IOAPI_INCL_DIR $IOAPI_DIR/include_files
ln -sfn $IOAPI_LIB_DIR $IOAPI_DIR/lib
endif
#> Check for netcdf and I/O API libs/includes, error if they don't exist
if ( ! -e $NETCDF_DIR/lib/libnetcdf.a ) then
echo "ERROR: $NETCDF_DIR/lib/libnetcdf.a does not exist in your CMAQ_LIB directory!!! Check your installation before proceeding with CMAQ build."
exit
endif
if ( ! -e $NETCDFF_DIR/lib/libnetcdff.a ) then
echo "ERROR: $NETCDFF_DIR/lib/libnetcdff.a does not exist in your CMAQ_LIB directory!!! Check your installation before proceeding with CMAQ build."
exit
endif
if ( ! -e $IOAPI_DIR/lib/libioapi.a ) then
echo "ERROR: $IOAPI_DIR/lib/libioapi.a does not exist in your CMAQ_LIB directory!!! Check your installation before proceeding with CMAQ build."
exit
endif
if ( ! -e $IOAPI_DIR/lib/m3utilio.mod ) then
echo "ERROR: $IOAPI_MOD_DIR/m3utilio.mod does not exist in your CMAQ_LIB directory!!! Check your installation before proceeding with CMAQ build."
exit
endif
#> Set executable id
setenv EXEC_ID ${bld_os}_${system}${compilerString}