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gcc_install_hdf5.cyclecloud.hpcx.shared.csh
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#!/bin/csh -f
# requires running in .csh shell
set echo
# -----------------------
# Download and build HDF5
# -----------------------
mkdir /shared/build-hdf5
cd /shared/build-hdf5
wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.5/src/hdf5-1.10.5.tar.gz
tar xvf hdf5-1.10.5.tar.gz
rm -f hdf5-1.10.5.tar.gz
cd hdf5-1.10.5
setenv CFLAGS "-O3"
setenv FFLAGS "-O3"
setenv CXXFLAGS "-O3"
setenv FCFLAGS "-O3"
./configure --prefix=/shared/build-hdf5/install --enable-fortran --enable-cxx --enable-shared --with-pic
make |& tee make.gcc9.log
## make check > make.gcc9.check
make install
# ---------------------------
# Download and build netCDF-C
# ---------------------------
setenv DIR /shared/build-hdf5
mkdir -p /shared/build-hdf5/install/bin
cd $DIR
#wget https://www.unidata.ucar.edu/downloads/netcdf/ftp/netcdf-c-4.7.1.tar.gz
#wget https://github.com/Unidata/netcdf-c/archive/refs/tags/v4.8.1.tar.gz
# wget https://github.com/Unidata/netcdf-c/archive/refs/tags/v4.7.4.tar.gz
wget https://github.com/Unidata/netcdf-c/archive/refs/tags/v4.9.0.tar.gz
tar xzvf v4.9.0.tar.gz
setenv CFLAGS "-O3 -fPIC"
setenv FFLAGS "-O3 -fPIC"
setenv CXXFLAGS "-O3 -fPIC"
setenv FCFLAGS "-O3 -fPIC"
setenv NCDIR $DIR/install
setenv CPPFLAGS -I${NCDIR}/include
setenv LDFLAGS -L${NCDIR}/lib
cd netcdf-c-4.9.0
./configure --with-pic --enable-netcdf-4 --enable-shared --prefix=/shared/build-hdf5/install
make |& tee make.gcc9.log
make install
# ---------------------------------
# Download and build netCDF-Fortran
# ---------------------------------
cd /shared/build-hdf5
#wget https://www.unidata.ucar.edu/downloads/netcdf/ftp/netcdf-fortran-4.5.2.tar.gz
# wget https://github.com/Unidata/netcdf-fortran/archive/refs/tags/v4.5.3.tar.gz
wget https://github.com/Unidata/netcdf-fortran/archive/refs/tags/v4.5.4.tar.gz
tar xvf v4.5.4.tar.gz
setenv CFLAGS "-O3 -fPIC"
setenv FFLAGS "-O3 -fPIC"
setenv CXXFLAGS "-O3 -fPIC"
setenv FCFLAGS "-O3 -fPIC"
setenv NCDIR $DIR/install
setenv CPPFLAGS -I${NCDIR}/include
setenv LDFLAGS -L${NCDIR}/lib
cd netcdf-fortran-4.5.4
./configure --with-pic --enable-shared --prefix=/shared/build-hdf5/install
make |& tee make.gcc9.log
make install
# -----------------------------
# Download and build netCDF-CXX
# -----------------------------
# cd /shared/build-hdf5
# #wget https://www.unidata.ucar.edu/downloads/netcdf/ftp/netcdf-cxx4-4.3.1.tar.gz
wget https://github.com/Unidata/netcdf-cxx4/archive/refs/tags/v4.3.1.tar.gz
# tar xvf v4.3.1.tar.gz
# #rm -f netcdf-cxx4-4.3.1.tar.gz
# cd netcdf-cxx4-4.3.1
# ./configure --with-pic --enable-shared --prefix=/shared/build-hdf5/install
# make |& tee make.gcc9.log
# make install
# --------------------------
# Download and build OpenMPI
# --------------------------
# cd /usr/local/s
# wget https://download.open-mpi.org/release/open-mpi/v3.1/openmpi-3.1.4.tar.gz
# tar xvf openmpi-3.1.4.tar.gz
# rm -f openmpi-3.1.4.tar.gz
# cd openmpi-3.1.4
# export CFLAGS="-O3"
# export FFLAGS="-O3"
# export CXXFLAGS="-O3"
# export FCFLAGS="-O3"
# ./configure --prefix=/shared/build-hdf5/install --enable-mpi-cxx
# make |& tee make.gcc9.log
## make check > make.gcc9.check
# make install
# ----------------------------------
# Download and build Parallel netCDF
# ----------------------------------
setenv DIR /shared/build-hdf5
cd $DIR
wget https://parallel-netcdf.github.io/Release/pnetcdf-1.12.1.tar.gz
tar xvf pnetcdf-1.12.1.tar.gz
rm -f pnetcdf-1.12.1.tar.gz
cd pnetcdf-1.12.1
setenv CFLAGS "-O3 -fPIC"
setenv FFLAGS "-O3 -fPIC"
setenv CXXFLAGS "-O3 -fPIC"
setenv FCFLAGS "-O3 -fPIC"
setenv NCDIR $DIR/install
setenv CPPFLAGS -I${NCDIR}/include
setenv LDFLAGS -L${NCDIR}/lib
setenv LIBS "-lnetcdf"
./configure --prefix=/shared/build-hdf5/install MPIF77=mpif90 MPIF90=mpif90 MPICC=mpicc MPICXX=mpicxx --with-mpi=/opt/hpcx-v2.9.0-gcc-MLNX_OFED_LINUX-5.4-1.0.3.0-redhat8.4-x86_64/ompi
make |& tee make.gcc9.log
make install
# ----------------------------------------
# Use tcsh 6.20 instead of the broken 6.21
# ----------------------------------------
# cd /shared/build-hdf5
# wget http://ftp.funet.fi/pub/mirrors/ftp.astron.com/pub/tcsh/old/tcsh-6.20.00.tar.gz
# tar xvf tcsh-6.20.00.tar.gz
# rm -f tcsh-6.20.00.tar.gz
# cd tcsh-6.20.00
# ./configure --disable-nls
# make > make.gcc9.log 2>&1
# make install
# ln -s /usr/local/bin/tcsh /bin/csh
# ----------------------
# Download and build vim
# ----------------------
# cd /usr/local/src
# git clone https://github.com/vim/vim.git vim
# cd vim
# ./configure
# make > make.gcc9.log 2>&1
# make install
# cd /usr/local/bin
# ln -s vim vi
# install test
cd /shared/build-hdf5/install/bin
whereis h5diff
./nc-config --version
./nf-config --version
#./ncxx4-config --version