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NEWS.md

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CHANGES IN smam VERSION 0.7.2

MINOR CHANGES

CHANGES IN smam VERSION 0.7.1

MINOR CHANGES

  • Updated 'RcppExports.cpp' to solve 'warning: format string is not a string literal (potentially insecure) [-Wformat-security]'

CHANGES IN smam VERSION 0.7.0

MAJOR CHANGES

  • Added generic function estimate to retrieve estimation result for all fit functions.

  • Added generic function vcov to evaluate covariance matrix of estimate for all fit functions' result.

  • Added a new vignette.

  • Added function rBB for simulation Brownian bridge.

  • Added function rMRB for simulation moving-resting bridge.

MINOR CHANGES

  • Updated package description by adding new references.

  • Updated citation information.

  • Added print_level to fitMRME and fitMRH that controls how much output is shown during the optimization process.

  • Added appropriate PKGNAME-package \alias as per "Documenting packages" in R-exts.

CHANGES IN smam VERSION 0.6.0

MAJOR CHANGES

  • Added moving-moving process include rMM(simulation), fitMM(point estimator), estVarMM(standard error).

MINOR CHANGES

  • Fixed bugs in seasonal toolbox.

  • Updated .cpp files to adapt the update of R package Rcpp.

CHANGES IN smam VERSION 0.5.4

MINOR CHANGES

  • Modified estVarMRME_Godambe and estVarMRME_pBootstrap.

  • Added 'f109' data.

CHANGES IN smam VERSION 0.5.3, 0.5.2, 0.5.1

MINOR CHANGES

  • Fixed some bugs in solaris system. It is difficult to debug in solaris system. CRAN check packages in solaris system but I cannot do it locally. You can use R-hub to check your own package under solaris environment but R-hub does not support GSL, which is needed by smam. So, this is why I submitted such many versions.

CHANGES IN smam VERSION 0.5.0

MAJOR CHANGES

  • Added moving-resting model with measurement error is modeled as Gaussian noise as fitMRME.

  • Added estimator variance function for fitMRME as estVarMRME_Godambe and estVarMRME_pBootstrap.

CHANGES IN smam VERSION 0.4.0

MAJOR CHANGES

  • Added moving-resting-handling model with both full likelihood and composite likelihood.

  • Provided option to use only part of dataset to fit BMME model, moving-resting model and moving-resting-handling model (in function fitBMME, fitMR, and fitMRH).

  • Provided tools for seasonal behavior analysis.

  • Parallel code is implemented for moving-resting-handling model to speed code up.

  • Added code for predicting state at given time point under MR model and MRH model (beta version).

MINOR CHANGES

  • Added vignette for quick start.

  • Redocumented whole package.

  • Renamed rBmme -> rBMME, fitBmme -> fitBMME, rMovRes -> rMR and fitMovRes -> fitMR.

  • Provided option to show simulated states in rMR and rMRH.

CHANGES IN smam VERSION 0.3.0

MAJOR CHANGES

  • Added full likelihood based hidden Markov model

  • Full likelihood and composite likelihood are now done with Rcpp

CHANGES IN smam VERSION 0.2.2

MINOR CHANGES

  • Added Depends: R (>= 3.0.0).

  • Corrected double to void of C function pmr.

CHANGES IN smam VERSION 0.2.1

MAJOR CHANGES

  • First public release.