README.md

DIAG Website content

This repository stores all the content and source code for the DIAG websites. From this repository multiple Pelican-powered websites are built, based on a central content database.

Websites

Live websites:

• Pathology: https://www.computationalpathologygroup.eu
• RSE: https://rse.diagnijmegen.nl
• AI for Health: https://www.ai-for-health.nl
• RTC: https://rtc.diagnijmegen.nl
• DIAG (main website): https://www.diagnijmegen.nl

Updating the content

Please see the documentation for guides on updating the sites.

Building the website locally

Requirements: Linux environment (on Windows via WSL) and Python 3 (we use Ubuntu with conda/miniconda istalled and a conda environment with PYTHON=3.9)

Preparations:

1. Clone website content (if on windows, do this from WSL/ubuntu commandline). cd into website-content
2. Install dependencies: pip install -r requirements.txt
3. Run bash ./parse_publications.sh to download and parse the publication files.
4. Run: LOCAL=1 WEBSITE=website-pathology bash ./copy_content.sh to copy files for any website. If you get an error cp: cannot create directory 'website-pathology/output/images': No such file or directory, then you should make this folder: mkdir -p website-pathology/output/images and try again

Building the website:

1. cd into the website folder: cd website-pathology
2. Run pelican: pelican --autoreload --listen
3. Visit http://localhost:8000

To build the css:

1. Install npm==7.12.0
2. Run css build in radboudumc-theme: npm run deploy-watch

To automatically build and host the website in a docker image, follow the instruction in the docker folder.

Design resources

If you design an image/poster or similar for the website, please store the design files (if not too big) in the directoy content/src/ in the apropriate subtree. This allows others to update media more easily should they ever become outdated.

Pipeline