diff --git a/deepsearch/chemistry/queries/molecules.py b/deepsearch/chemistry/queries/molecules.py index 00248b1b..445b62a2 100644 --- a/deepsearch/chemistry/queries/molecules.py +++ b/deepsearch/chemistry/queries/molecules.py @@ -1,7 +1,7 @@ from enum import Enum from typing import List, Union -from pydantic import BaseModel +from pydantic.v1 import BaseModel from deepsearch.cps.client.queries import Query diff --git a/deepsearch/core/cli/profile.py b/deepsearch/core/cli/profile.py index 9da3e0c6..404e8685 100644 --- a/deepsearch/core/cli/profile.py +++ b/deepsearch/core/cli/profile.py @@ -43,7 +43,7 @@ def add_profile( profile_settings = ProfileSettings( host=host, username=username, - api_key=api_key, + api_key=api_key, # type: ignore[arg-type] verify_ssl=verify_ssl, ) diff --git a/deepsearch/core/client/config.py b/deepsearch/core/client/config.py index dc23907b..83dc0f14 100644 --- a/deepsearch/core/client/config.py +++ b/deepsearch/core/client/config.py @@ -1,6 +1,6 @@ from typing import Union -from pydantic import BaseModel +from pydantic.v1 import BaseModel class DeepSearchBearerTokenAuth(BaseModel): diff --git a/deepsearch/core/client/settings.py b/deepsearch/core/client/settings.py index 550c5ddc..da90e8a8 100644 --- a/deepsearch/core/client/settings.py +++ b/deepsearch/core/client/settings.py @@ -4,7 +4,7 @@ from pathlib import Path from typing import Dict, Optional, Union -from pydantic import BaseSettings, SecretStr +from pydantic.v1 import BaseSettings, SecretStr class DumpableSettings(BaseSettings): @@ -47,8 +47,8 @@ def from_cli_prompt(cls) -> ProfileSettings: return cls( host=input("Host: "), username=input("Username: "), - api_key=getpass("API key: "), - verify_ssl=input("SSL verification [y/n]: "), + api_key=getpass("API key: "), # type: ignore[arg-type] + verify_ssl=input("SSL verification [y/n]: "), # type: ignore[arg-type] ) diff --git a/deepsearch/core/client/settings_manager.py b/deepsearch/core/client/settings_manager.py index ac836c09..396187b3 100644 --- a/deepsearch/core/client/settings_manager.py +++ b/deepsearch/core/client/settings_manager.py @@ -5,7 +5,7 @@ from typing import Dict, List, Optional import platformdirs -from pydantic import ValidationError +from pydantic.v1 import ValidationError from deepsearch.core.cli.profile_utils import ( MSG_AMBIGUOUS_SUCCESSOR, @@ -116,7 +116,7 @@ def _migrate_legacy_config(self) -> None: new_cfg = ProfileSettings( host=legacy_cfg.host, username=legacy_cfg.auth.username, - api_key=legacy_cfg.auth.api_key, + api_key=legacy_cfg.auth.api_key, # type: ignore[arg-type] verify_ssl=legacy_cfg.verify_ssl, ) self.save_settings( @@ -144,7 +144,7 @@ def get_profile_settings( prfl_name = profile_name or self.get_active_profile() if prfl_name is None: try: # try to instantiate from environment alone - return ProfileSettings() + return ProfileSettings() # type: ignore[call-arg] except ValidationError: if len(self._profile_cache) == 0: raise RuntimeError(MSG_NO_PROFILES_DEFINED) diff --git a/deepsearch/cps/client/api.py b/deepsearch/cps/client/api.py index e6fbe604..8c64c980 100644 --- a/deepsearch/cps/client/api.py +++ b/deepsearch/cps/client/api.py @@ -3,7 +3,7 @@ from typing import Optional import requests -from pydantic import ValidationError +from pydantic.v1 import ValidationError import deepsearch.cps.apis.user from deepsearch.core.client import ( @@ -165,7 +165,7 @@ def from_env(cls, profile_name: Optional[str] = None) -> CpsApi: CpsApi: the created API object """ try: - settings = ProfileSettings() + settings = ProfileSettings() # type: ignore[call-arg] except ValidationError: settings_mgr = SettingsManager() settings = settings_mgr.get_profile_settings(profile_name=profile_name) diff --git a/deepsearch/cps/client/components/data_indices.py b/deepsearch/cps/client/components/data_indices.py index 78c42bee..796880dd 100644 --- a/deepsearch/cps/client/components/data_indices.py +++ b/deepsearch/cps/client/components/data_indices.py @@ -8,7 +8,7 @@ from urllib.parse import urlparse import requests -from pydantic import BaseModel +from pydantic.v1 import BaseModel from deepsearch.cps.apis import public as sw_client from deepsearch.cps.apis.public.models.attachment_upload_data import ( diff --git a/deepsearch/cps/client/components/elastic.py b/deepsearch/cps/client/components/elastic.py index d46cf2c6..b814f62d 100644 --- a/deepsearch/cps/client/components/elastic.py +++ b/deepsearch/cps/client/components/elastic.py @@ -3,7 +3,7 @@ import datetime from typing import TYPE_CHECKING, Any, Dict, List, Union -from pydantic import BaseModel +from pydantic.v1 import BaseModel from deepsearch.cps.apis import public as sw_client from deepsearch.cps.client.components.data_indices import ( diff --git a/deepsearch/cps/client/components/projects.py b/deepsearch/cps/client/components/projects.py index d48c03fd..fe827f24 100644 --- a/deepsearch/cps/client/components/projects.py +++ b/deepsearch/cps/client/components/projects.py @@ -4,7 +4,7 @@ from enum import Enum from typing import TYPE_CHECKING, List, Optional, Union -from pydantic import BaseModel +from pydantic.v1 import BaseModel import deepsearch.cps.apis.user from deepsearch.cps.apis.user.models.token_response import TokenResponse diff --git a/deepsearch/cps/client/components/uploader.py b/deepsearch/cps/client/components/uploader.py index c2fa10c1..e008b957 100644 --- a/deepsearch/cps/client/components/uploader.py +++ b/deepsearch/cps/client/components/uploader.py @@ -4,7 +4,7 @@ from typing import TYPE_CHECKING, Union import requests -from pydantic import BaseModel +from pydantic.v1 import BaseModel from deepsearch.cps.apis import public as sw_client from deepsearch.cps.apis.public.models.temporary_upload_file_result import ( diff --git a/deepsearch/documents/core/lookup.py b/deepsearch/documents/core/lookup.py index 5ea9a74d..80559d68 100644 --- a/deepsearch/documents/core/lookup.py +++ b/deepsearch/documents/core/lookup.py @@ -1,6 +1,6 @@ from typing import Any, Dict, List -from pydantic import BaseModel +from pydantic.v1 import BaseModel def _resolve_item(item, doc): diff --git a/deepsearch/documents/core/models.py b/deepsearch/documents/core/models.py index f2a89e00..887e4dec 100644 --- a/deepsearch/documents/core/models.py +++ b/deepsearch/documents/core/models.py @@ -3,7 +3,7 @@ from textwrap import dedent from typing import ClassVar, Dict, List, Literal, Optional, Set, Union, get_args -from pydantic import BaseModel, Field, ValidationError, conlist, parse_obj_as +from pydantic.v1 import BaseModel, Field, ValidationError, conlist, parse_obj_as from deepsearch import CpsApi from deepsearch.core.util.ccs_utils import get_ccs_project_key @@ -31,13 +31,13 @@ class S3Coordinates(BaseModel): "", description=dedent( """ - Control the infix of the object keys that are saved on the document's `_s3_data`, after `key_prefix`, + Control the infix of the object keys that are saved on the document's `_s3_data`, after `key_prefix`, and before `PDFDocuments/{document_hash}.pdf` or `PDFPages/{page_hash}.pdf`. By default, the infix is empty. For using the name of the index in the coordinates, you can use `key_infix_format = "{index_name}"`. - For example, if: + For example, if: ``` key_prefix = "my_prefix/" @@ -577,8 +577,6 @@ class ConversionSettings(BaseModel): @classmethod def from_project(cls, api: CpsApi, proj_key: str) -> "ConversionSettings": - conv_settings = cls() - proj_key, _ = get_ccs_project_key(api, proj_key) request_conv_settings = api.client.session.get( @@ -587,34 +585,36 @@ def from_project(cls, api: CpsApi, proj_key: str) -> "ConversionSettings": request_conv_settings.raise_for_status() settings_dict = request_conv_settings.json() - conv_settings.pipeline = ConversionPipelineSettings.from_ccs_spec( + pipeline = ConversionPipelineSettings.from_ccs_spec( settings_dict.get("model_pipeline") ) - conv_settings.ocr = OCRSettings.from_ccs_spec(settings_dict.get("ocr")) - conv_settings.metadata = ConversionMetadata.from_ccs_spec( - settings_dict.get("metadata") + ocr = OCRSettings.from_ccs_spec(settings_dict.get("ocr")) + metadata = ConversionMetadata.from_ccs_spec(settings_dict.get("metadata")) + return cls( + pipeline=pipeline, + ocr=ocr, + metadata=metadata, ) - return conv_settings @classmethod def from_defaults(cls, api: CpsApi) -> "ConversionSettings": - conv_settings = cls() - request_conv_settings = api.client.session.get( url=URLNavigator(api).url_conversion_defaults() ) request_conv_settings.raise_for_status() settings_dict = request_conv_settings.json() - conv_settings.pipeline = ConversionPipelineSettings.from_ccs_spec( + pipeline = ConversionPipelineSettings.from_ccs_spec( settings_dict.get("model_pipeline") ) - conv_settings.ocr = OCRSettings.from_ccs_spec(settings_dict.get("ocr")) - conv_settings.metadata = ConversionMetadata.from_ccs_spec( - settings_dict.get("metadata") - ) + ocr = OCRSettings.from_ccs_spec(settings_dict.get("ocr")) + metadata = ConversionMetadata.from_ccs_spec(settings_dict.get("metadata")) - return conv_settings + return cls( + pipeline=pipeline, + ocr=ocr, + metadata=metadata, + ) def to_ccs_spec(self): obj = {} diff --git a/deepsearch/documents/core/utils.py b/deepsearch/documents/core/utils.py index c8ace652..c4b8e7b4 100644 --- a/deepsearch/documents/core/utils.py +++ b/deepsearch/documents/core/utils.py @@ -9,7 +9,7 @@ from typing import Any, Dict, Iterator, List import requests -from pydantic import BaseModel +from pydantic.v1 import BaseModel from tqdm import tqdm from deepsearch.cps.client.api import CpsApi diff --git a/deepsearch/model/base/types.py b/deepsearch/model/base/types.py index f0cbacf9..586a333e 100644 --- a/deepsearch/model/base/types.py +++ b/deepsearch/model/base/types.py @@ -2,7 +2,7 @@ from enum import Enum from typing import Any, Dict, Optional -from pydantic import BaseModel, Extra, Field, PositiveFloat +from pydantic.v1 import BaseModel, Extra, Field, PositiveFloat class StrictModel(BaseModel, extra=Extra.forbid): diff --git a/deepsearch/model/examples/dummy_nlp_annotator/model.py b/deepsearch/model/examples/dummy_nlp_annotator/model.py index abc3ff89..2c932846 100644 --- a/deepsearch/model/examples/dummy_nlp_annotator/model.py +++ b/deepsearch/model/examples/dummy_nlp_annotator/model.py @@ -23,7 +23,7 @@ def __init__(self) -> None: kind=Kind.NLPModel, name="DummyNLPAnnotator", version="0.1.0", - supported_types=["text"], + supported_types=["text"], # type: ignore[list-item] labels=self._generate_labels(), ) diff --git a/deepsearch/model/kinds/nlp/controller.py b/deepsearch/model/kinds/nlp/controller.py index c98de4b2..dfd62df4 100644 --- a/deepsearch/model/kinds/nlp/controller.py +++ b/deepsearch/model/kinds/nlp/controller.py @@ -29,16 +29,16 @@ def __init__(self, model: BaseNLPModel): def get_info(self) -> NLPInfoOutput: cfg = self._model.get_nlp_config() metadata = NLPModelMetadata( - supported_object_types=cfg.supported_types, + supported_object_types=cfg.supported_types, # type: ignore[arg-type] **self._get_metadata().dict(), # passing parent metadata dict as kwargs ) spec = NLPInfoOutputDefinitionsSpec( - definition=cfg.labels, + definition=cfg.labels.dict(), metadata=metadata, ) definitions = NLPInfoOutputDefinitions( apiVersion=self._get_api_version(), - kind=self.get_kind(), + kind=self.get_kind(), # type: ignore[arg-type] spec=spec, ) return NLPInfoOutput(definitions=definitions) diff --git a/deepsearch/model/kinds/qagen/controller.py b/deepsearch/model/kinds/qagen/controller.py index 99ee138a..1162228d 100644 --- a/deepsearch/model/kinds/qagen/controller.py +++ b/deepsearch/model/kinds/qagen/controller.py @@ -24,7 +24,7 @@ def get_info(self) -> QAGenInfoOutput: ) definitions = QAGenInfoOutputDefinitions( apiVersion=super()._get_api_version(), - kind=self.get_kind(), + kind=self.get_kind(), # type: ignore[arg-type] spec=spec, ) return QAGenInfoOutput(definitions=definitions) diff --git a/deepsearch/model/kinds/qagen/types.py b/deepsearch/model/kinds/qagen/types.py index 714eb3c0..2bea0190 100644 --- a/deepsearch/model/kinds/qagen/types.py +++ b/deepsearch/model/kinds/qagen/types.py @@ -1,6 +1,6 @@ from typing import Any, Dict, List, Literal, Optional -from pydantic import root_validator +from pydantic.v1 import root_validator from deepsearch.model.base.types import ( BaseAppPredInput, diff --git a/deepsearch/model/server/config.py b/deepsearch/model/server/config.py index 0c8dd366..4f55bf22 100644 --- a/deepsearch/model/server/config.py +++ b/deepsearch/model/server/config.py @@ -1,4 +1,4 @@ -from pydantic import BaseSettings, SecretStr +from pydantic.v1 import BaseSettings, SecretStr class Settings(BaseSettings): diff --git a/poetry.lock b/poetry.lock index d667d69a..359dcd9a 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,5 +1,19 @@ # This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand. +[[package]] +name = "annotated-types" +version = "0.6.0" +description = "Reusable constraint types to use with typing.Annotated" +optional = false +python-versions = ">=3.8" +files = [ + {file = "annotated_types-0.6.0-py3-none-any.whl", hash = "sha256:0641064de18ba7a25dee8f96403ebc39113d0cb953a01429249d5c7564666a43"}, + {file = "annotated_types-0.6.0.tar.gz", hash = "sha256:563339e807e53ffd9c267e99fc6d9ea23eb8443c08f112651963e24e22f84a5d"}, +] + +[package.dependencies] +typing-extensions = {version = ">=4.0.0", markers = "python_version < \"3.9\""} + [[package]] name = "anyio" version = "3.7.1" @@ -1408,56 +1422,139 @@ files = [ [[package]] name = "pydantic" -version = "1.10.12" -description = "Data validation and settings management using python type hints" +version = "2.5.2" +description = "Data validation using Python type hints" optional = false python-versions = ">=3.7" files = [ - {file = "pydantic-1.10.12-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:a1fcb59f2f355ec350073af41d927bf83a63b50e640f4dbaa01053a28b7a7718"}, - {file = "pydantic-1.10.12-cp310-cp310-macosx_11_0_arm64.whl", 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