README.md

Bender is a set of Genomic tools for deployment on Slurm managed systems

Table of contents

• Table of contents
• Overview
• Installation
  • Via Homebrew (for macOS)
  • Via APT (for Debian-based Linux distros)
  • From Github release
• Documentation
  • Usage
• Examples
  • Example bender config
• Bender for the curious
• Acknowledgements
• License

Overview

Installation

Not currently working

Via Homebrew (for macOS)

Prerequisites:

• Homebrew

brew install danielrivasmd/Bender

Not currently working

Via APT (for Debian-based Linux distros)

curl -SsL https://fbecart.github.io/ppa/debian/KEY.gpg | sudo apt-key add -
sudo curl -SsL -o /etc/apt/sources.list.d/fbecart.list https://fbecart.github.io/ppa/debian/fbecart.list
sudo apt update
sudo apt install bender

Not currently working

From Github release

Not currently working

Documentation

Usage

Use bender -h or bender --help to display help on commandline.

"Good news everyone!"
Bender automates Genomic jobs in Slurm systems.
"It's highly addictive!"

Bender creates a convinient command line interphase
with built-in and accessible documentation

Usage:
  bender [command]

Available Commands:
  help                  Help about any command

Flags:
  -h, --help            help for Bender
  -o, --outDir string   Output directory. creates if not exitst

Use "bender [command] --help" for more information about a command.

Examples

Example bender config

Bender for the curious

Acknowledgements

License

Bender is distributed under the terms of the GNU GENERAL PUBLIC LICENSE.

See LICENSE for details.