diff --git a/404.html b/404.html index 1798726..4209c42 100644 --- a/404.html +++ b/404.html @@ -32,7 +32,7 @@ MGnifyR - 0.99.19 + 0.99.20 diff --git a/LICENSE-text.html b/LICENSE-text.html index 33ba4c6..4d4839e 100644 --- a/LICENSE-text.html +++ b/LICENSE-text.html @@ -17,7 +17,7 @@ MGnifyR - 0.99.19 + 0.99.20 diff --git a/articles/MGnifyR.html b/articles/MGnifyR.html index 8d9fd01..8c009d0 100644 --- a/articles/MGnifyR.html +++ b/articles/MGnifyR.html @@ -33,7 +33,7 @@ MGnifyR - 0.99.19 + 0.99.20 @@ -971,7 +971,7 @@

Fetch sequence files#> other attached packages: #> [1] miaViz_1.11.0 ggraph_2.1.0 #> [3] scater_1.31.2 ggplot2_3.5.0 -#> [5] scuttle_1.13.0 MGnifyR_0.99.19 +#> [5] scuttle_1.13.0 MGnifyR_0.99.20 #> [7] biomformat_1.31.0 mia_1.11.1 #> [9] MultiAssayExperiment_1.29.1 TreeSummarizedExperiment_2.11.0 #> [11] Biostrings_2.71.2 XVector_0.43.1 diff --git a/articles/MGnifyR_long.html b/articles/MGnifyR_long.html index 9bed733..53f6531 100644 --- a/articles/MGnifyR_long.html +++ b/articles/MGnifyR_long.html @@ -33,7 +33,7 @@ MGnifyR - 0.99.19 + 0.99.20 @@ -1576,7 +1576,7 @@

Fetch sequence files#> other attached packages: #> [1] miaViz_1.11.0 ggraph_2.1.0 #> [3] scater_1.31.2 ggplot2_3.5.0 -#> [5] scuttle_1.13.0 MGnifyR_0.99.19 +#> [5] scuttle_1.13.0 MGnifyR_0.99.20 #> [7] biomformat_1.31.0 mia_1.11.1 #> [9] MultiAssayExperiment_1.29.1 TreeSummarizedExperiment_2.11.0 #> [11] Biostrings_2.71.2 XVector_0.43.1 diff --git a/articles/index.html b/articles/index.html index 291467e..1a92b89 100644 --- a/articles/index.html +++ b/articles/index.html @@ -17,7 +17,7 @@ MGnifyR - 0.99.19 + 0.99.20 diff --git a/authors.html b/authors.html index d22b582..a8fba94 100644 --- a/authors.html +++ b/authors.html @@ -17,7 +17,7 @@ MGnifyR - 0.99.19 + 0.99.20 @@ -81,13 +81,13 @@

Citation

Borman T, Allen B, Lahti L (2024). MGnifyR: R interface to EBI MGnify metagenomics resource. -R package version 0.99.19, https://github.com/EBI-Metagenomics/MGnifyR. +R package version 0.99.20, https://github.com/EBI-Metagenomics/MGnifyR. 

@Manual{,
   title = {MGnifyR: R interface to EBI MGnify metagenomics resource},
   author = {Tuomas Borman and Ben Allen and Leo Lahti},
   year = {2024},
-  note = {R package version 0.99.19},
+  note = {R package version 0.99.20},
   url = {https://github.com/EBI-Metagenomics/MGnifyR},
 }
diff --git a/index.html b/index.html index ba655d0..79badec 100644 --- a/index.html +++ b/index.html @@ -37,7 +37,7 @@ MGnifyR - 0.99.19 + 0.99.20 diff --git a/pkgdown.yml b/pkgdown.yml index f178e33..9313631 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -4,5 +4,5 @@ pkgdown_sha: ~ articles: MGnifyR: MGnifyR.html MGnifyR_long: MGnifyR_long.html -last_built: 2024-02-26T11:42Z +last_built: 2024-02-26T12:02Z diff --git a/reference/.MGnifyR_cache/analyses/MGYA00377505_format_json/.RDS b/reference/.MGnifyR_cache/analyses/MGYA00377505_format_json/.RDS index f62ad63..c00a861 100644 Binary files a/reference/.MGnifyR_cache/analyses/MGYA00377505_format_json/.RDS and b/reference/.MGnifyR_cache/analyses/MGYA00377505_format_json/.RDS differ diff --git a/reference/.MGnifyR_cache/samples/ERS2967391_format_json/.RDS b/reference/.MGnifyR_cache/samples/ERS2967391_format_json/.RDS index 756c075..657ac41 100644 Binary files a/reference/.MGnifyR_cache/samples/ERS2967391_format_json/.RDS and b/reference/.MGnifyR_cache/samples/ERS2967391_format_json/.RDS differ diff --git a/reference/.MGnifyR_cache/studies/MGYS00005058_format_json/.RDS b/reference/.MGnifyR_cache/studies/MGYS00005058_format_json/.RDS index 3ce284a..616be8c 100644 Binary files a/reference/.MGnifyR_cache/studies/MGYS00005058_format_json/.RDS and b/reference/.MGnifyR_cache/studies/MGYS00005058_format_json/.RDS differ diff --git a/reference/MGnifyR-package.html b/reference/MGnifyR-package.html index 53bcff7..54bcd9c 100644 --- a/reference/MGnifyR-package.html +++ b/reference/MGnifyR-package.html @@ -22,7 +22,7 @@ MGnifyR - 0.99.19 + 0.99.20 diff --git a/reference/MgnifyClient-accessors.html b/reference/MgnifyClient-accessors.html index 48f16c1..f48bbef 100644 --- a/reference/MgnifyClient-accessors.html +++ b/reference/MgnifyClient-accessors.html @@ -17,7 +17,7 @@ MGnifyR - 0.99.19 + 0.99.20 diff --git a/reference/MgnifyClient.html b/reference/MgnifyClient.html index baacd9a..af38924 100644 --- a/reference/MgnifyClient.html +++ b/reference/MgnifyClient.html @@ -21,7 +21,7 @@ MGnifyR - 0.99.19 + 0.99.20 diff --git a/reference/deprecate.html b/reference/deprecate.html index 2f9e5f9..51f55d4 100644 --- a/reference/deprecate.html +++ b/reference/deprecate.html @@ -17,7 +17,7 @@ MGnifyR - 0.99.19 + 0.99.20 diff --git a/reference/doQuery.html b/reference/doQuery.html index 616d7e6..fa35fbd 100644 --- a/reference/doQuery.html +++ b/reference/doQuery.html @@ -20,7 +20,7 @@ MGnifyR - 0.99.19 + 0.99.20 diff --git a/reference/getData.html b/reference/getData.html index 65e7e6a..4cd1bcd 100644 --- a/reference/getData.html +++ b/reference/getData.html @@ -17,7 +17,7 @@ MGnifyR - 0.99.19 + 0.99.20 diff --git a/reference/getFile.html b/reference/getFile.html index a5d4af8..a97bcc0 100644 --- a/reference/getFile.html +++ b/reference/getFile.html @@ -21,7 +21,7 @@ MGnifyR - 0.99.19 + 0.99.20 diff --git a/reference/getMetadata.html b/reference/getMetadata.html index f20eb69..4352da2 100644 --- a/reference/getMetadata.html +++ b/reference/getMetadata.html @@ -20,7 +20,7 @@ MGnifyR - 0.99.19 + 0.99.20 diff --git a/reference/getResult.html b/reference/getResult.html index cee69aa..2371463 100644 --- a/reference/getResult.html +++ b/reference/getResult.html @@ -17,7 +17,7 @@ MGnifyR - 0.99.19 + 0.99.20 diff --git a/reference/index.html b/reference/index.html index acaad27..ba1edb1 100644 --- a/reference/index.html +++ b/reference/index.html @@ -17,7 +17,7 @@ MGnifyR - 0.99.19 + 0.99.20 diff --git a/reference/searchAnalysis.html b/reference/searchAnalysis.html index 46b1408..55e0b35 100644 --- a/reference/searchAnalysis.html +++ b/reference/searchAnalysis.html @@ -17,7 +17,7 @@ MGnifyR - 0.99.19 + 0.99.20