From 3b87c39bea8edd9b2c330e6fff850091614109dd Mon Sep 17 00:00:00 2001
From: TuomasBorman <tvborm@utu.fi>
Date: Wed, 20 Mar 2024 15:21:27 +0200
Subject: [PATCH 1/2] Enable GHA for MAC and WIN

---
 .github/workflows/rworkflows.yml | 10 ++++++++++
 1 file changed, 10 insertions(+)

diff --git a/.github/workflows/rworkflows.yml b/.github/workflows/rworkflows.yml
index 495e3fd..3f212d2 100644
--- a/.github/workflows/rworkflows.yml
+++ b/.github/workflows/rworkflows.yml
@@ -28,6 +28,16 @@ jobs:
           r: auto
           cont: bioconductor/bioconductor_docker:devel
           rspm: https://packagemanager.rstudio.com/cran/__linux__/latest/release
+        - os: macOS-latest
+          bioc: devel
+          r: auto
+          cont: ~
+          rspm: ~
+        - os: windows-latest
+          bioc: devel
+          r: auto
+          cont: ~
+          rspm: ~
     steps:
     - uses: neurogenomics/rworkflows@master
       with:

From 36abe1e7ea4a6b4bbf74971b51a3625b92462eba Mon Sep 17 00:00:00 2001
From: TuomasBorman <tvborm@utu.fi>
Date: Wed, 20 Mar 2024 15:24:43 +0200
Subject: [PATCH 2/2] up

---
 .github/workflows/rworkflows.yml | 11 +++++------
 1 file changed, 5 insertions(+), 6 deletions(-)

diff --git a/.github/workflows/rworkflows.yml b/.github/workflows/rworkflows.yml
index 3f212d2..ebc5a11 100644
--- a/.github/workflows/rworkflows.yml
+++ b/.github/workflows/rworkflows.yml
@@ -14,8 +14,7 @@ name: rworkflows
     - RELEASE_**
 jobs:
   rworkflows:
-    permissions:
-      contents: write
+    permissions: write-all
     runs-on: ${{ matrix.config.os }}
     name: ${{ matrix.config.os }} (${{ matrix.config.r }})
     container: ${{ matrix.config.cont }}
@@ -26,8 +25,8 @@ jobs:
         - os: ubuntu-latest
           bioc: devel
           r: auto
-          cont: bioconductor/bioconductor_docker:devel
-          rspm: https://packagemanager.rstudio.com/cran/__linux__/latest/release
+          cont: ghcr.io/bioconductor/bioconductor_docker:devel
+          rspm: ~
         - os: macOS-latest
           bioc: devel
           r: auto
@@ -43,7 +42,7 @@ jobs:
       with:
         run_bioccheck: ${{ false }}
         run_rcmdcheck: ${{ true }}
-        as_cran: ${{ false }}
+        as_cran: ${{ true }}
         run_vignettes: ${{ true }}
         has_testthat: ${{ true }}
         run_covr: ${{ true }}
@@ -55,4 +54,4 @@ jobs:
         DOCKER_TOKEN: ${{ secrets.DOCKER_TOKEN }}
         runner_os: ${{ runner.os }}
         cache_version: cache-v1
-        enable_act: ${{ false }}
+        docker_registry: ghcr.io