setup.py

import os
from setuptools import setup, find_packages

here = os.path.abspath(os.path.dirname(__file__))
README = open(os.path.join(here, 'README.md')).read()
CHANGES = open(os.path.join(here, 'CHANGES.rst')).read()
# Edit Snovault version after the `@` here, can be a branch or tag
SNOVAULT_DEP = "git+https://github.com/ENCODE-DCC/snovault.git@configure-shards-by-type"

INSTALL_REQUIRES = [
    "PasteDeploy==2.1.0",
    "Pillow==7.0.0",
    "SQLAlchemy==1.3.13",
    "WSGIProxy2==0.4.6",
    "WebOb==1.8.6",
    "WebTest==2.0.35",
    "alembic==1.4.0",
    "boto3==1.11.9",
    "botocore==1.14.9",
    "certifi==2019.11.28",
    "elasticsearch==5.4.0",
    "future==0.18.2",
    "humanfriendly==6.1",
    "jsonschema_serialize_fork==2.1.1",
    "loremipsum==1.0.5",
    "passlib==1.7.2",
    "psutil==5.6.7",
    "psycopg2==2.8.4",
    "pyramid-localroles==0.1",
    "pyramid-multiauth==0.9.0",
    "pyramid-translogger==0.1",
    "pyramid==1.10.4",
    "python-magic==0.4.15",
    "pytz==2019.3",
    "rdflib-jsonld==0.4.0",
    "rdflib==4.2.2",
    "repoze.debug==1.1",
    "rfc3987==1.3.8",
    "rutter==0.2",
    "subprocess_middleware==0.3",
    "transaction==3.0.0",
    "waitress==1.4.3",
    "xlrd==1.2.0",
    "zope.interface==5.3.0",
    "zope.sqlalchemy==1.2",
    f"snovault @ {SNOVAULT_DEP}",
]

EXTRAS_REQUIRE = {
    "tests": [
        "coverage==5.0.3",
        "moto[s3,sts]==2.0.2",
        "pytest-bdd==3.2.1",
        "pytest-cov==2.8.1",
        "pytest-exact-fixtures==0.3",
        "pytest-instafail==0.4.1.post0",
        "pytest-mock==2.0.0",
        "splinter==0.17.0",
        "pytest-splinter==2.0.1",
        "pytest==5.3.2",
        "responses==0.14.0",
    ],
}

EXTRAS_REQUIRE["dev"] = EXTRAS_REQUIRE["tests"]

setup(
    name='encoded',
    version='134.0',
    description='Metadata database for ENCODE',
    long_description=README + '\n\n' + CHANGES,
    packages=find_packages('src'),
    package_dir={'': 'src'},
    include_package_data=True,
    zip_safe=False,
    author='Laurence Rowe',
    author_email='lrowe@stanford.edu',
    url='http://encode-dcc.org',
    license='MIT',
    install_requires=INSTALL_REQUIRES,
    extras_require=EXTRAS_REQUIRE,
    entry_points='''
        [console_scripts]
        batchupgrade = snovault.batchupgrade:main
        create-mapping = snovault.elasticsearch.create_mapping:main
        dev-servers = snovault.dev_servers:main
        es-index-listener = snovault.elasticsearch.es_index_listener:main

        add-date-created = encoded.commands.add_date_created:main
        check-rendering = encoded.commands.check_rendering:main
        deploy = encoded.commands.deploy:main
        extract_test_data = encoded.commands.extract_test_data:main
        es-index-data = encoded.commands.es_index_data:main
        generate-ontology = encoded.commands.generate_ontology:main
        import-data = encoded.commands.import_data:main
        jsonld-rdf = encoded.commands.jsonld_rdf:main
        migrate-files-aws = encoded.commands.migrate_files_aws:main
        profile = encoded.commands.profile:main
        spreadsheet-to-json = encoded.commands.spreadsheet_to_json:main
        migrate-attachments-aws = encoded.commands.migrate_attachments_aws:main
        migrate-dataset-type = encoded.commands.migrate_dataset_type:main
        alembic = encoded.commands.alembic:main

        [paste.app_factory]
        main = encoded:main

        [paste.composite_factory]
        indexer = snovault.elasticsearch.es_index_listener:composite
        visindexer = snovault.elasticsearch.es_index_listener:composite

        [paste.filter_app_factory]
        memlimit = encoded.memlimit:filter_app
        ''',
)