diff --git a/diploidify.wdl b/diploidify.wdl index fd3971b..5fea01a 100644 --- a/diploidify.wdl +++ b/diploidify.wdl @@ -4,9 +4,9 @@ import "./hic.wdl" workflow diploidify { meta { - version: "1.14.2" - caper_docker: "encodedcc/hic-pipeline:1.14.2" - caper_singularity: "docker://encodedcc/hic-pipeline:1.14.2" + version: "1.14.3" + caper_docker: "encodedcc/hic-pipeline:1.14.3" + caper_singularity: "docker://encodedcc/hic-pipeline:1.14.3" } input { @@ -33,8 +33,8 @@ workflow diploidify { Int? create_diploid_dhs_ram_gb Int? create_diploid_dhs_disk_size_gb - String docker = "encodedcc/hic-pipeline:1.14.2" - String singularity = "docker://encodedcc/hic-pipeline:1.14.2" + String docker = "encodedcc/hic-pipeline:1.14.3" + String singularity = "docker://encodedcc/hic-pipeline:1.14.3" } RuntimeEnvironment runtime_environment = { diff --git a/genophase.wdl b/genophase.wdl index c27c49b..8218bce 100644 --- a/genophase.wdl +++ b/genophase.wdl @@ -4,9 +4,9 @@ import "./hic.wdl" workflow genophase { meta { - version: "1.14.2" - caper_docker: "encodedcc/hic-pipeline:1.14.2" - caper_singularity: "docker://encodedcc/hic-pipeline:1.14.2" + version: "1.14.3" + caper_docker: "encodedcc/hic-pipeline:1.14.3" + caper_singularity: "docker://encodedcc/hic-pipeline:1.14.3" croo_out_def: "https://raw.githubusercontent.com/ENCODE-DCC/hic-pipeline/dev/croo_out_def.json" } @@ -25,8 +25,8 @@ workflow genophase { Int? run_3d_dna_ram_gb Boolean no_phasing = false - String docker = "encodedcc/hic-pipeline:1.14.2" - String singularity = "docker://encodedcc/hic-pipeline:1.14.2" + String docker = "encodedcc/hic-pipeline:1.14.3" + String singularity = "docker://encodedcc/hic-pipeline:1.14.3" } RuntimeEnvironment runtime_environment = { diff --git a/hic.wdl b/hic.wdl index 7395754..fea0e4e 100644 --- a/hic.wdl +++ b/hic.wdl @@ -19,9 +19,9 @@ struct RuntimeEnvironment { workflow hic { meta { - version: "1.14.2" - caper_docker: "encodedcc/hic-pipeline:1.14.2" - caper_singularity: "docker://encodedcc/hic-pipeline:1.14.2" + version: "1.14.3" + caper_docker: "encodedcc/hic-pipeline:1.14.3" + caper_singularity: "docker://encodedcc/hic-pipeline:1.14.3" croo_out_def: "https://raw.githubusercontent.com/ENCODE-DCC/hic-pipeline/dev/croo_out_def.json" description: "ENCODE Hi-C pipeline, see https://github.com/ENCODE-DCC/hic-pipeline for details." } @@ -77,10 +77,10 @@ workflow hic { Int? create_accessibility_track_disk_size_gb String assembly_name = "undefined" - String docker = "encodedcc/hic-pipeline:1.14.2" - String singularity = "docker://encodedcc/hic-pipeline:1.14.2" - String delta_docker = "encodedcc/hic-pipeline:1.14.2_delta" - String hiccups_docker = "encodedcc/hic-pipeline:1.14.2_hiccups" + String docker = "encodedcc/hic-pipeline:1.14.3" + String singularity = "docker://encodedcc/hic-pipeline:1.14.3" + String delta_docker = "encodedcc/hic-pipeline:1.14.3_delta" + String hiccups_docker = "encodedcc/hic-pipeline:1.14.3_hiccups" } RuntimeEnvironment runtime_environment = { diff --git a/hic_pipeline/__init__.py b/hic_pipeline/__init__.py index 1ba749e..2cd6192 100644 --- a/hic_pipeline/__init__.py +++ b/hic_pipeline/__init__.py @@ -1,5 +1,5 @@ __title__ = "hic-pipeline" -__version__ = "1.14.1" +__version__ = "1.14.3" __description__ = "ENCODE Hi-C uniform processing pipeline." __url__ = "https://github.com/ENCODE-DCC/hic-pipeline" __uri__ = __url__ diff --git a/make_restriction_site_locations.wdl b/make_restriction_site_locations.wdl index 22ad6f9..f28df6c 100644 --- a/make_restriction_site_locations.wdl +++ b/make_restriction_site_locations.wdl @@ -7,9 +7,9 @@ struct RuntimeEnvironment { workflow make_restriction_site_locations { meta { - version: "1.14.2" - caper_docker: "encodedcc/hic-pipeline:1.14.2" - caper_singularity: "docker://encodedcc/hic-pipeline:1.14.2" + version: "1.14.3" + caper_docker: "encodedcc/hic-pipeline:1.14.3" + caper_singularity: "docker://encodedcc/hic-pipeline:1.14.3" } parameter_meta { @@ -22,8 +22,8 @@ workflow make_restriction_site_locations { File reference_fasta String assembly_name String restriction_enzyme - String docker = "encodedcc/hic-pipeline:1.14.2" - String singularity = "docker://encodedcc/hic-pipeline:1.14.2" + String docker = "encodedcc/hic-pipeline:1.14.3" + String singularity = "docker://encodedcc/hic-pipeline:1.14.3" } diff --git a/megamap.wdl b/megamap.wdl index fa0bd27..9b213ab 100644 --- a/megamap.wdl +++ b/megamap.wdl @@ -4,9 +4,9 @@ import "./hic.wdl" workflow megamap { meta { - version: "1.14.2" - caper_docker: "encodedcc/hic-pipeline:1.14.2" - caper_singularity: "docker://encodedcc/hic-pipeline:1.14.2" + version: "1.14.3" + caper_docker: "encodedcc/hic-pipeline:1.14.3" + caper_singularity: "docker://encodedcc/hic-pipeline:1.14.3" } input { @@ -34,10 +34,10 @@ workflow megamap { Int? create_accessibility_track_disk_size_gb # Pipeline images - String docker = "encodedcc/hic-pipeline:1.14.2" - String singularity = "docker://encodedcc/hic-pipeline:1.14.2" - String delta_docker = "encodedcc/hic-pipeline:1.14.2_delta" - String hiccups_docker = "encodedcc/hic-pipeline:1.14.2_hiccups" + String docker = "encodedcc/hic-pipeline:1.14.3" + String singularity = "docker://encodedcc/hic-pipeline:1.14.3" + String delta_docker = "encodedcc/hic-pipeline:1.14.3_delta" + String hiccups_docker = "encodedcc/hic-pipeline:1.14.3_hiccups" } RuntimeEnvironment runtime_environment = {