examples/03_01_coupling_riverine_modules_nsm.ipynb

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    "# ClearWater-Riverine Demo 3 (part 1): Coupling Transport to Water Quality Reactions with ClearWater-Modules\n",
    "\n",
    "**Objective**: Demonstrate a more complex scenario of coupled transport and reaction models in Sumwere Creek, using the [ClearWater-modules](https://github.com/EcohydrologyTeam/ClearWater-modules) to simulate water quality concentrations related to nutrients.\n",
    "\n",
    "This third notebook builds on the previous two notebooks using [ClearWater-riverine](https://github.com/EcohydrologyTeam/ClearWater-riverine) provided in demo notebook 1 and 2.\n",
    "\n",
    "## Background \n",
    "This notebook couples Clearwater-riverine (transport) with Clearwater-modules (reactions) - specifically, the Nutrient Simulation Model I (NSMI). The NSMI is an essential component of ClearWater (Corps Library for Environmental Analysis and Restoration of Watersheds). NSMI plays a crucial role in simulating and predicting water quality constituents concentrations within aquatic ecosystems. The NSMI was designed to conduct an aquatic eutrophication simulation\n",
    "with simplified processes and minimum state variables. The NSMI predicts algae and benthic algae biomass, simple nitrogen and phosphorus cycles, organic carbon, carbonaceous biochemical oxygen demand, dissolved oxygen and pathogen using 16 state variables. These state variables can be selected to be \"on\" or \"off\" for custom application of the model.\n",
    "\n",
    "## Example Case Study\n",
    "\n",
    "This example shows how to run Clearwater Riverine coupled with Clearwater Modules in a fictional location, \"Sumwere Creek\" (shown below). The flow field for Sumwere Creek comes from a HEC-RAS 2D model, which has a domain of 2x2 km and a base mesh cell size of 100x100 meters. \n",
    "\n",
    "![image.png](../docs/imgs/SumwereCreek_coarse.png)\n",
    "\n",
    "The upstream boundary for Sumwere Creek is at the top left of the model domain, flowing into the domain at a constant 3 cms. At the first bend in the creek, there is an additional boundary representing a spring-fed tributary to the creek (1 cms). Further downstream, there is a meander in the stream forming a slow-flowing oxbow lake. There is another boundary flowing into that oxbow lake, representing a powerplant discharge (0.5 cms). \n",
    "\n",
    "The downstream boundary is a constant stage set at 20.75 meters.\n",
    "\n",
    "In this example, the focus is on Ammonium (NH4), Nitrate (NO3), Total inorganic phosphorous (TIP), dissolved oxygen (DOX), and Algae [phytoplankton] (Ap) with all other state variables turned off.\n",
    "\n",
    "All boundary condition concentrations for these five state variables are set to a constant value for the duration of the simulation.\n",
    "\n",
    "| Boundary Condition | NH4 (mg/L) | NO3 (mg/L) | TIP (mg/L) | DOX (mg/L) | Ap (mg/L) |\n",
    "| :----------------- | ---------: | ---------: | ---------: | ---------: | --------: |\n",
    "| upstream           | 0.010      | 0.500      | 0.050      | 8.000      | 10.000    |\n",
    "| downstream         | 0.010      | 0.500      | 0.050      | 8.000      | 10.000    |\n",
    "| spring-fed         | 1.800      | 0.250      | 0.001      | 4.000      | 0.000     |\n",
    "| powerplant         | 1.500      | 1.000      | 0.060      | 8.000      | 200.000   |\n",
    "\n",
    "The initial condition concentrations throughout the domain for these state variables are set to the same values as the upstream boundary condition except for Ap within the oxbow lake cells which are set to 200 mg/L.\n",
    "\n",
    "We simulate this scenario over the course of one full day, using solar radiation data from Arizona in part to compute Ap growth which helps to show off the impacts of NSMI.\n",
    "\n",
    "At this time, every state variable (including the ones that are turned off) needs to have boundary conditions and initial conditions set for the NSMI model to initialize. The appropriate files, including for state variables switched off, have been added to the simulation directory for this use. It should be noted that place holder values were used for these switched off variables, and the user should modify the values if alternative simulations with these state variables switched on are executed. Since the Clearwater-riverine library was use to initialize the state variables in Clearwater-modules and the code in this notebook intentionally did not pass any information regarding the switched off state variables back to \"riverine\", the saved results from this model simulaltion will also have results for the turned off state variables, but they are only being advected/diffused and are essentially acting as tracers.\n",
    "\n",
    "### Data Availability\n",
    "All data required run this notebook is available at this [Google Drive](https://drive.google.com/drive/folders/19uCjAJPZh4g6r1ZWzk1D_B8jZGluSc4N?usp=drive_link). Please download the entire folder and place it in the `data_temp` folder of this repository to run the rest of the notebook."
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   "source": [
    "## Model Set-Up\n",
    "### General Imports"
   ]
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i < urls.length; i++) {\n        skip.push(urls[i])\n      }\n    }    if (((window['GridStack'] !== undefined) && (!(window['GridStack'] instanceof HTMLElement))) || window.requirejs) {\n      var urls = ['https://cdn.holoviz.org/panel/1.3.1/dist/bundled/gridstack/gridstack@7.2.3/dist/gridstack-all.js'];\n      for (var i = 0; i < urls.length; i++) {\n        skip.push(urls[i])\n      }\n    }    if (((window['Notyf'] !== undefined) && (!(window['Notyf'] instanceof HTMLElement))) || window.requirejs) {\n      var urls = ['https://cdn.holoviz.org/panel/1.3.1/dist/bundled/notificationarea/notyf@3/notyf.min.js'];\n      for (var i = 0; i < urls.length; i++) {\n        skip.push(urls[i])\n      }\n    }    var existing_scripts = []\n    var scripts = document.getElementsByTagName('script')\n    for (var i = 0; i < scripts.length; i++) {\n      var script = scripts[i]\n      if (script.src != null) {\n\texisting_scripts.push(script.src)\n      }\n    }\n    for (var i = 0; i < js_urls.length; i++) {\n      var url = js_urls[i];\n      if (skip.indexOf(url) !== -1 || existing_scripts.indexOf(url) !== -1) {\n\tif (!window.requirejs) {\n\t  on_load();\n\t}\n\tcontinue;\n      }\n      var element = document.createElement('script');\n      element.onload = on_load;\n      element.onerror = on_error;\n      element.async = false;\n      element.src = url;\n      console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n      document.head.appendChild(element);\n    }\n    for (var i = 0; i < js_modules.length; i++) {\n      var url = js_modules[i];\n      if (skip.indexOf(url) !== -1 || existing_scripts.indexOf(url) !== -1) {\n\tif (!window.requirejs) {\n\t  on_load();\n\t}\n\tcontinue;\n      }\n      var element = document.createElement('script');\n      element.onload = on_load;\n      element.onerror = on_error;\n      element.async = false;\n      element.src = url;\n      element.type = \"module\";\n      console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n      document.head.appendChild(element);\n    }\n    for (const name in js_exports) {\n      var url = js_exports[name];\n      if (skip.indexOf(url) >= 0 || root[name] != null) {\n\tif (!window.requirejs) {\n\t  on_load();\n\t}\n\tcontinue;\n      }\n      var element = document.createElement('script');\n      element.onerror = on_error;\n      element.async = false;\n      element.type = \"module\";\n      console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n      element.textContent = `\n      import ${name} from \"${url}\"\n      window.${name} = ${name}\n      window._bokeh_on_load()\n      `\n      document.head.appendChild(element);\n    }\n    if (!js_urls.length && !js_modules.length) {\n      on_load()\n    }\n  };\n\n  function inject_raw_css(css) {\n    const element = document.createElement(\"style\");\n    element.appendChild(document.createTextNode(css));\n    document.body.appendChild(element);\n  }\n\n  var js_urls = [\"https://cdn.bokeh.org/bokeh/release/bokeh-3.3.1.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-gl-3.3.1.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-widgets-3.3.1.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-tables-3.3.1.min.js\", \"https://cdn.holoviz.org/panel/1.3.1/dist/panel.min.js\", \"https://cdn.jsdelivr.net/npm/@holoviz/geoviews@1.11.0/dist/geoviews.min.js\"];\n  var js_modules = [];\n  var js_exports = {};\n  var css_urls = [];\n  var inline_js = [    function(Bokeh) {\n      Bokeh.set_log_level(\"info\");\n    },\nfunction(Bokeh) {} // ensure no trailing comma for IE\n  ];\n\n  function run_inline_js() {\n    if ((root.Bokeh !== undefined) || (force === true)) {\n      for (var i = 0; i < inline_js.length; i++) {\n        inline_js[i].call(root, root.Bokeh);\n      }\n      // Cache old bokeh versions\n      if (Bokeh != undefined && !reloading) {\n\tvar NewBokeh = root.Bokeh;\n\tif (Bokeh.versions === undefined) {\n\t  Bokeh.versions = new Map();\n\t}\n\tif (NewBokeh.version !== Bokeh.version) {\n\t  Bokeh.versions.set(NewBokeh.version, NewBokeh)\n\t}\n\troot.Bokeh = Bokeh;\n      }} else if (Date.now() < root._bokeh_timeout) {\n      setTimeout(run_inline_js, 100);\n    } else if (!root._bokeh_failed_load) {\n      console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n      root._bokeh_failed_load = true;\n    }\n    root._bokeh_is_initializing = false\n  }\n\n  function load_or_wait() {\n    // Implement a backoff loop that tries to ensure we do not load multiple\n    // versions of Bokeh and its dependencies at the same time.\n    // In recent versions we use the root._bokeh_is_initializing flag\n    // to determine whether there is an ongoing attempt to initialize\n    // bokeh, however for backward compatibility we also try to ensure\n    // that we do not start loading a newer (Panel>=1.0 and Bokeh>3) version\n    // before older versions are fully initialized.\n    if (root._bokeh_is_initializing && Date.now() > root._bokeh_timeout) {\n      root._bokeh_is_initializing = false;\n      root._bokeh_onload_callbacks = undefined;\n      console.log(\"Bokeh: BokehJS was loaded multiple times but one version failed to initialize.\");\n      load_or_wait();\n    } else if (root._bokeh_is_initializing || (typeof root._bokeh_is_initializing === \"undefined\" && root._bokeh_onload_callbacks !== undefined)) {\n      setTimeout(load_or_wait, 100);\n    } else {\n      Bokeh = root.Bokeh;\n      bokeh_loaded = Bokeh != null && (Bokeh.version === py_version || (Bokeh.versions !== undefined && Bokeh.versions.has(py_version)));\n      root._bokeh_is_initializing = true\n      root._bokeh_onload_callbacks = []\n      if (!reloading && (!bokeh_loaded || is_dev)) {\n\troot.Bokeh = undefined;\n      }\n      load_libs(css_urls, js_urls, js_modules, js_exports, function() {\n\tconsole.debug(\"Bokeh: BokehJS plotting callback run at\", now());\n\trun_inline_js();\n      });\n    }\n  }\n  // Give older versions of the autoload script a head-start to ensure\n  // they initialize before we start loading newer version.\n  setTimeout(load_or_wait, 100)\n}(window));"
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       "  OutputArea.prototype.register_mime_type(EXEC_MIME_TYPE, append_mime, {\n",
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scripts.forEach( function (oldScript) {\n      var newScript = document.createElement(\"script\");\n      var attrs = [];\n      var nodemap = oldScript.attributes;\n      for (var j in nodemap) {\n        if (nodemap.hasOwnProperty(j)) {\n          attrs.push(nodemap[j])\n        }\n      }\n      attrs.forEach(function(attr) { newScript.setAttribute(attr.name, attr.value) });\n      newScript.appendChild(document.createTextNode(oldScript.innerHTML));\n      oldScript.parentNode.replaceChild(newScript, oldScript);\n    });\n    if (JS_MIME_TYPE in output.data) {\n      toinsert[nchildren-1].children[1].textContent = output.data[JS_MIME_TYPE];\n    }\n    output_area._hv_plot_id = id;\n    if ((window.Bokeh !== undefined) && (id in Bokeh.index)) {\n      window.PyViz.plot_index[id] = Bokeh.index[id];\n    } else {\n      window.PyViz.plot_index[id] = null;\n    }\n  } else if (output.metadata[EXEC_MIME_TYPE][\"server_id\"] !== undefined) {\n    var bk_div = document.createElement(\"div\");\n    bk_div.innerHTML = output.data[HTML_MIME_TYPE];\n    var script_attrs = bk_div.children[0].attributes;\n    for (var i = 0; i < script_attrs.length; i++) {\n      toinsert[toinsert.length - 1].childNodes[1].setAttribute(script_attrs[i].name, script_attrs[i].value);\n    }\n    // store reference to server id on output_area\n    output_area._bokeh_server_id = output.metadata[EXEC_MIME_TYPE][\"server_id\"];\n  }\n}\n\n/**\n * Handle when an output is cleared or removed\n */\nfunction handle_clear_output(event, handle) {\n  var id = handle.cell.output_area._hv_plot_id;\n  var server_id = handle.cell.output_area._bokeh_server_id;\n  if (((id === undefined) || !(id in PyViz.plot_index)) && (server_id !== undefined)) { return; }\n  var comm = window.PyViz.comm_manager.get_client_comm(\"hv-extension-comm\", \"hv-extension-comm\", function () {});\n  if (server_id !== null) {\n    comm.send({event_type: 'server_delete', 'id': server_id});\n    return;\n  } 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     "output_type": "display_data"
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    {
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       "*[data-root-id] > * {\n",
       "  box-sizing: border-box;\n",
       "  font-family: var(--jp-ui-font-family);\n",
       "  font-size: var(--jp-ui-font-size1);\n",
       "  color: var(--vscode-editor-foreground, var(--jp-ui-font-color1));\n",
       "}\n",
       "\n",
       "/* Override VSCode background color */\n",
       ".cell-output-ipywidget-background:has(\n",
       "    > .cell-output-ipywidget-background > .lm-Widget > *[data-root-id]\n",
       "  ),\n",
       ".cell-output-ipywidget-background:has(> .lm-Widget > *[data-root-id]) {\n",
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       "\n",
       "\n",
       "  <img src='data:image/png;base64,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'\n",
       "       style='height:15px; border-radius:12px; display: inline-block; float: left'></img>\n",
       "  \n",
       "\n",
       "\n",
       "\n",
       "\n",
       "</div>\n"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "from pathlib import Path\n",
    "import logging\n",
    "import numpy as np\n",
    "import pandas as pd\n",
    "import xarray as xr\n",
    "import holoviews as hv\n",
    "import geoviews as gv\n",
    "from holoviews import opts\n",
    "import panel as pn\n",
    "hv.extension(\"bokeh\")\n",
    "\n",
    "from shared import process_meteo_data\n",
    "from shared import setup_function_logger"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "id": "0c67989b-800f-4e70-85c9-525b670dfc42",
   "metadata": {},
   "outputs": [],
   "source": [
    "import warnings\n",
    "np.seterr(divide='ignore', invalid='ignore')\n",
    "warnings.filterwarnings('ignore')"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "baed1b6e-f756-4ca1-b959-4628ab2df47a",
   "metadata": {},
   "source": [
    "### Import ClearWater-riverine\n",
    "These steps require first completing **[Installation](https://github.com/EcohydrologyTeam/ClearWater-riverine?tab=readme-ov-file#installation)** of a [conda](https://conda.io/docs/) virtual environment customized for the ClearWater-riverine library."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "id": "41338e34-2b59-4cd4-b6b3-a52f6edf7768",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "WindowsPath('C:/Users/sjordan/OneDrive - LimnoTech/Documents/GitHub/clearwater-riverine')"
      ]
     },
     "execution_count": 3,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "# Find project directory (i.e. the parent to `/examples` directory for this notebook)\n",
    "project_path = Path.cwd().parent\n",
    "project_path"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "id": "e2bcf299-c36b-432a-8e28-d1366d0b9c87",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "WindowsPath('C:/Users/sjordan/OneDrive - LimnoTech/Documents/GitHub/clearwater-riverine/src')"
      ]
     },
     "execution_count": 4,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "# Your source directory should be: \n",
    "src_path = project_path / 'src'\n",
    "src_path"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "5cd020f2-ace9-4f32-a818-9a8716d21e53",
   "metadata": {},
   "source": [
    "Next, we'll need to import Clearwater Riverine. While the package is still under development, the easiest way to do this is to use the [`conda develop`](https://docs.conda.io/projects/conda-build/en/latest/resources/commands/conda-develop.html) command in the console or terminal like this, replacing the `'/path/to/module/src'` with your specific path to the source directory. In other words:\n",
    "- Copy from the output of `src_path` from the cell above, and \n",
    "- Paste it after `!conda develop` in the cell below (replacing the previous user's path). \n",
    "\n",
    "NOTE: If your path has any blank spaces, you must enclose the path with quotes."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "id": "9874c4fb-a442-46d9-a442-0df0f3cd01b3",
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "path exists, skipping C:\\Users\\sjordan\\OneDrive - LimnoTech\\Documents\\GitHub\\clearwater-riverine\\examples\\'\\Users\\aaufdenkampe\\Documents\\Python\\ClearWater-riverine\\src'\n",
      "completed operation for: C:\\Users\\sjordan\\OneDrive - LimnoTech\\Documents\\GitHub\\clearwater-riverine\\examples\\'\\Users\\aaufdenkampe\\Documents\\Python\\ClearWater-riverine\\src'\n"
     ]
    }
   ],
   "source": [
    "!conda develop '/Users/aaufdenkampe/Documents/Python/ClearWater-riverine/src'"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "id": "d0676e2a-bdc9-4774-ab6c-c81927353da4",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "application/javascript": [
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       "  function now() {\n",
       "    return new Date();\n",
       "  }\n",
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       "  var py_version = '3.3.1'.replace('rc', '-rc.').replace('.dev', '-dev.');\n",
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       "\n",
       "  function load_libs(css_urls, js_urls, js_modules, js_exports, callback) {\n",
       "    if (css_urls == null) css_urls = [];\n",
       "    if (js_urls == null) js_urls = [];\n",
       "    if (js_modules == null) js_modules = [];\n",
       "    if (js_exports == null) js_exports = {};\n",
       "\n",
       "    root._bokeh_onload_callbacks.push(callback);\n",
       "\n",
       "    if (root._bokeh_is_loading > 0) {\n",
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       "    if (js_urls.length === 0 && js_modules.length === 0 && Object.keys(js_exports).length === 0) {\n",
       "      run_callbacks();\n",
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       "      console.debug(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n",
       "    }\n",
       "\n",
       "    function on_load() {\n",
       "      root._bokeh_is_loading--;\n",
       "      if (root._bokeh_is_loading === 0) {\n",
       "        console.debug(\"Bokeh: all BokehJS libraries/stylesheets loaded\");\n",
       "        run_callbacks()\n",
       "      }\n",
       "    }\n",
       "    window._bokeh_on_load = on_load\n",
       "\n",
       "    function on_error() {\n",
       "      console.error(\"failed to load \" + url);\n",
       "    }\n",
       "\n",
       "    var skip = [];\n",
       "    if (window.requirejs) {\n",
       "      window.requirejs.config({'packages': {}, 'paths': {'jspanel': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/jspanel', 'jspanel-modal': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/modal/jspanel.modal', 'jspanel-tooltip': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/tooltip/jspanel.tooltip', 'jspanel-hint': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/hint/jspanel.hint', 'jspanel-layout': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/layout/jspanel.layout', 'jspanel-contextmenu': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/contextmenu/jspanel.contextmenu', 'jspanel-dock': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/dock/jspanel.dock', 'gridstack': 'https://cdn.jsdelivr.net/npm/gridstack@7.2.3/dist/gridstack-all', 'notyf': 'https://cdn.jsdelivr.net/npm/notyf@3/notyf.min'}, 'shim': {'jspanel': {'exports': 'jsPanel'}, 'gridstack': {'exports': 'GridStack'}}});\n",
       "      require([\"jspanel\"], function(jsPanel) {\n",
       "\twindow.jsPanel = jsPanel\n",
       "\ton_load()\n",
       "      })\n",
       "      require([\"jspanel-modal\"], function() {\n",
       "\ton_load()\n",
       "      })\n",
       "      require([\"jspanel-tooltip\"], function() {\n",
       "\ton_load()\n",
       "      })\n",
       "      require([\"jspanel-hint\"], function() {\n",
       "\ton_load()\n",
       "      })\n",
       "      require([\"jspanel-layout\"], function() {\n",
       "\ton_load()\n",
       "      })\n",
       "      require([\"jspanel-contextmenu\"], function() {\n",
       "\ton_load()\n",
       "      })\n",
       "      require([\"jspanel-dock\"], function() {\n",
       "\ton_load()\n",
       "      })\n",
       "      require([\"gridstack\"], function(GridStack) {\n",
       "\twindow.GridStack = GridStack\n",
       "\ton_load()\n",
       "      })\n",
       "      require([\"notyf\"], function() {\n",
       "\ton_load()\n",
       "      })\n",
       "      root._bokeh_is_loading = css_urls.length + 9;\n",
       "    } else {\n",
       "      root._bokeh_is_loading = css_urls.length + js_urls.length + js_modules.length + Object.keys(js_exports).length;\n",
       "    }\n",
       "\n",
       "    var existing_stylesheets = []\n",
       "    var links = document.getElementsByTagName('link')\n",
       "    for (var i = 0; i < links.length; i++) {\n",
       "      var link = links[i]\n",
       "      if (link.href != null) {\n",
       "\texisting_stylesheets.push(link.href)\n",
       "      }\n",
       "    }\n",
       "    for (var i = 0; i < css_urls.length; i++) {\n",
       "      var url = css_urls[i];\n",
       "      if (existing_stylesheets.indexOf(url) !== -1) {\n",
       "\ton_load()\n",
       "\tcontinue;\n",
       "      }\n",
       "      const element = document.createElement(\"link\");\n",
       "      element.onload = on_load;\n",
       "      element.onerror = on_error;\n",
       "      element.rel = \"stylesheet\";\n",
       "      element.type = \"text/css\";\n",
       "      element.href = url;\n",
       "      console.debug(\"Bokeh: injecting link tag for BokehJS stylesheet: \", url);\n",
       "      document.body.appendChild(element);\n",
       "    }    if (((window['jsPanel'] !== undefined) && (!(window['jsPanel'] instanceof HTMLElement))) || window.requirejs) {\n",
       "      var urls = ['https://cdn.holoviz.org/panel/1.3.1/dist/bundled/floatpanel/jspanel4@4.12.0/dist/jspanel.js', 'https://cdn.holoviz.org/panel/1.3.1/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/modal/jspanel.modal.js', 'https://cdn.holoviz.org/panel/1.3.1/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/tooltip/jspanel.tooltip.js', 'https://cdn.holoviz.org/panel/1.3.1/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/hint/jspanel.hint.js', 'https://cdn.holoviz.org/panel/1.3.1/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/layout/jspanel.layout.js', 'https://cdn.holoviz.org/panel/1.3.1/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/contextmenu/jspanel.contextmenu.js', 'https://cdn.holoviz.org/panel/1.3.1/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/dock/jspanel.dock.js'];\n",
       "      for (var i = 0; i < urls.length; i++) {\n",
       "        skip.push(urls[i])\n",
       "      }\n",
       "    }    if (((window['GridStack'] !== undefined) && (!(window['GridStack'] instanceof HTMLElement))) || window.requirejs) {\n",
       "      var urls = ['https://cdn.holoviz.org/panel/1.3.1/dist/bundled/gridstack/gridstack@7.2.3/dist/gridstack-all.js'];\n",
       "      for (var i = 0; i < urls.length; i++) {\n",
       "        skip.push(urls[i])\n",
       "      }\n",
       "    }    if (((window['Notyf'] !== undefined) && (!(window['Notyf'] instanceof HTMLElement))) || window.requirejs) {\n",
       "      var urls = ['https://cdn.holoviz.org/panel/1.3.1/dist/bundled/notificationarea/notyf@3/notyf.min.js'];\n",
       "      for (var i = 0; i < urls.length; i++) {\n",
       "        skip.push(urls[i])\n",
       "      }\n",
       "    }    var existing_scripts = []\n",
       "    var scripts = document.getElementsByTagName('script')\n",
       "    for (var i = 0; i < scripts.length; i++) {\n",
       "      var script = scripts[i]\n",
       "      if (script.src != null) {\n",
       "\texisting_scripts.push(script.src)\n",
       "      }\n",
       "    }\n",
       "    for (var i = 0; i < js_urls.length; i++) {\n",
       "      var url = js_urls[i];\n",
       "      if (skip.indexOf(url) !== -1 || existing_scripts.indexOf(url) !== -1) {\n",
       "\tif (!window.requirejs) {\n",
       "\t  on_load();\n",
       "\t}\n",
       "\tcontinue;\n",
       "      }\n",
       "      var element = document.createElement('script');\n",
       "      element.onload = on_load;\n",
       "      element.onerror = on_error;\n",
       "      element.async = false;\n",
       "      element.src = url;\n",
       "      console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n",
       "      document.head.appendChild(element);\n",
       "    }\n",
       "    for (var i = 0; i < js_modules.length; i++) {\n",
       "      var url = js_modules[i];\n",
       "      if (skip.indexOf(url) !== -1 || existing_scripts.indexOf(url) !== -1) {\n",
       "\tif (!window.requirejs) {\n",
       "\t  on_load();\n",
       "\t}\n",
       "\tcontinue;\n",
       "      }\n",
       "      var element = document.createElement('script');\n",
       "      element.onload = on_load;\n",
       "      element.onerror = on_error;\n",
       "      element.async = false;\n",
       "      element.src = url;\n",
       "      element.type = \"module\";\n",
       "      console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n",
       "      document.head.appendChild(element);\n",
       "    }\n",
       "    for (const name in js_exports) {\n",
       "      var url = js_exports[name];\n",
       "      if (skip.indexOf(url) >= 0 || root[name] != null) {\n",
       "\tif (!window.requirejs) {\n",
       "\t  on_load();\n",
       "\t}\n",
       "\tcontinue;\n",
       "      }\n",
       "      var element = document.createElement('script');\n",
       "      element.onerror = on_error;\n",
       "      element.async = false;\n",
       "      element.type = \"module\";\n",
       "      console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n",
       "      element.textContent = `\n",
       "      import ${name} from \"${url}\"\n",
       "      window.${name} = ${name}\n",
       "      window._bokeh_on_load()\n",
       "      `\n",
       "      document.head.appendChild(element);\n",
       "    }\n",
       "    if (!js_urls.length && !js_modules.length) {\n",
       "      on_load()\n",
       "    }\n",
       "  };\n",
       "\n",
       "  function inject_raw_css(css) {\n",
       "    const element = document.createElement(\"style\");\n",
       "    element.appendChild(document.createTextNode(css));\n",
       "    document.body.appendChild(element);\n",
       "  }\n",
       "\n",
       "  var js_urls = [\"https://cdn.bokeh.org/bokeh/release/bokeh-3.3.1.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-gl-3.3.1.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-widgets-3.3.1.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-tables-3.3.1.min.js\", \"https://cdn.holoviz.org/panel/1.3.1/dist/panel.min.js\", \"https://cdn.jsdelivr.net/npm/@holoviz/geoviews@1.11.0/dist/geoviews.min.js\"];\n",
       "  var js_modules = [];\n",
       "  var js_exports = {};\n",
       "  var css_urls = [];\n",
       "  var inline_js = [    function(Bokeh) {\n",
       "      Bokeh.set_log_level(\"info\");\n",
       "    },\n",
       "function(Bokeh) {} // ensure no trailing comma for IE\n",
       "  ];\n",
       "\n",
       "  function run_inline_js() {\n",
       "    if ((root.Bokeh !== undefined) || (force === true)) {\n",
       "      for (var i = 0; i < inline_js.length; i++) {\n",
       "        inline_js[i].call(root, root.Bokeh);\n",
       "      }\n",
       "      // Cache old bokeh versions\n",
       "      if (Bokeh != undefined && !reloading) {\n",
       "\tvar NewBokeh = root.Bokeh;\n",
       "\tif (Bokeh.versions === undefined) {\n",
       "\t  Bokeh.versions = new Map();\n",
       "\t}\n",
       "\tif (NewBokeh.version !== Bokeh.version) {\n",
       "\t  Bokeh.versions.set(NewBokeh.version, NewBokeh)\n",
       "\t}\n",
       "\troot.Bokeh = Bokeh;\n",
       "      }} else if (Date.now() < root._bokeh_timeout) {\n",
       "      setTimeout(run_inline_js, 100);\n",
       "    } else if (!root._bokeh_failed_load) {\n",
       "      console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n",
       "      root._bokeh_failed_load = true;\n",
       "    }\n",
       "    root._bokeh_is_initializing = false\n",
       "  }\n",
       "\n",
       "  function load_or_wait() {\n",
       "    // Implement a backoff loop that tries to ensure we do not load multiple\n",
       "    // versions of Bokeh and its dependencies at the same time.\n",
       "    // In recent versions we use the root._bokeh_is_initializing flag\n",
       "    // to determine whether there is an ongoing attempt to initialize\n",
       "    // bokeh, however for backward compatibility we also try to ensure\n",
       "    // that we do not start loading a newer (Panel>=1.0 and Bokeh>3) version\n",
       "    // before older versions are fully initialized.\n",
       "    if (root._bokeh_is_initializing && Date.now() > root._bokeh_timeout) {\n",
       "      root._bokeh_is_initializing = false;\n",
       "      root._bokeh_onload_callbacks = undefined;\n",
       "      console.log(\"Bokeh: BokehJS was loaded multiple times but one version failed to initialize.\");\n",
       "      load_or_wait();\n",
       "    } else if (root._bokeh_is_initializing || (typeof root._bokeh_is_initializing === \"undefined\" && root._bokeh_onload_callbacks !== undefined)) {\n",
       "      setTimeout(load_or_wait, 100);\n",
       "    } else {\n",
       "      Bokeh = root.Bokeh;\n",
       "      bokeh_loaded = Bokeh != null && (Bokeh.version === py_version || (Bokeh.versions !== undefined && Bokeh.versions.has(py_version)));\n",
       "      root._bokeh_is_initializing = true\n",
       "      root._bokeh_onload_callbacks = []\n",
       "      if (!reloading && (!bokeh_loaded || is_dev)) {\n",
       "\troot.Bokeh = undefined;\n",
       "      }\n",
       "      load_libs(css_urls, js_urls, js_modules, js_exports, function() {\n",
       "\tconsole.debug(\"Bokeh: BokehJS plotting callback run at\", now());\n",
       "\trun_inline_js();\n",
       "      });\n",
       "    }\n",
       "  }\n",
       "  // Give older versions of the autoload script a head-start to ensure\n",
       "  // they initialize before we start loading newer version.\n",
       "  setTimeout(load_or_wait, 100)\n",
       "}(window));"
      ],
      "application/vnd.holoviews_load.v0+json": "(function(root) {\n  function now() {\n    return new Date();\n  }\n\n  var force = true;\n  var py_version = '3.3.1'.replace('rc', '-rc.').replace('.dev', '-dev.');\n  var is_dev = py_version.indexOf(\"+\") !== -1 || py_version.indexOf(\"-\") !== -1;\n  var reloading = false;\n  var Bokeh = root.Bokeh;\n  var bokeh_loaded = Bokeh != null && (Bokeh.version === py_version || (Bokeh.versions !== undefined && Bokeh.versions.has(py_version)));\n\n  if (typeof (root._bokeh_timeout) === \"undefined\" || force) {\n    root._bokeh_timeout = Date.now() + 5000;\n    root._bokeh_failed_load = false;\n  }\n\n  function run_callbacks() {\n    try {\n      root._bokeh_onload_callbacks.forEach(function(callback) {\n        if (callback != null)\n          callback();\n      });\n    } finally {\n      delete root._bokeh_onload_callbacks;\n    }\n    console.debug(\"Bokeh: all callbacks have finished\");\n  }\n\n  function load_libs(css_urls, js_urls, js_modules, js_exports, callback) {\n    if (css_urls == null) css_urls = [];\n    if (js_urls == null) js_urls = [];\n    if (js_modules == null) js_modules = [];\n    if (js_exports == null) js_exports = {};\n\n    root._bokeh_onload_callbacks.push(callback);\n\n    if (root._bokeh_is_loading > 0) {\n      console.debug(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n      return null;\n    }\n    if (js_urls.length === 0 && js_modules.length === 0 && Object.keys(js_exports).length === 0) {\n      run_callbacks();\n      return null;\n    }\n    if (!reloading) {\n      console.debug(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n    }\n\n    function on_load() {\n      root._bokeh_is_loading--;\n      if (root._bokeh_is_loading === 0) {\n        console.debug(\"Bokeh: all BokehJS libraries/stylesheets loaded\");\n        run_callbacks()\n      }\n    }\n    window._bokeh_on_load = on_load\n\n    function on_error() {\n      console.error(\"failed to load \" + url);\n    }\n\n    var skip = [];\n    if (window.requirejs) {\n      window.requirejs.config({'packages': {}, 'paths': {'jspanel': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/jspanel', 'jspanel-modal': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/modal/jspanel.modal', 'jspanel-tooltip': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/tooltip/jspanel.tooltip', 'jspanel-hint': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/hint/jspanel.hint', 'jspanel-layout': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/layout/jspanel.layout', 'jspanel-contextmenu': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/contextmenu/jspanel.contextmenu', 'jspanel-dock': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/dock/jspanel.dock', 'gridstack': 'https://cdn.jsdelivr.net/npm/gridstack@7.2.3/dist/gridstack-all', 'notyf': 'https://cdn.jsdelivr.net/npm/notyf@3/notyf.min'}, 'shim': {'jspanel': {'exports': 'jsPanel'}, 'gridstack': {'exports': 'GridStack'}}});\n      require([\"jspanel\"], function(jsPanel) {\n\twindow.jsPanel = jsPanel\n\ton_load()\n      })\n      require([\"jspanel-modal\"], function() {\n\ton_load()\n      })\n      require([\"jspanel-tooltip\"], function() {\n\ton_load()\n      })\n      require([\"jspanel-hint\"], function() {\n\ton_load()\n      })\n      require([\"jspanel-layout\"], function() {\n\ton_load()\n      })\n      require([\"jspanel-contextmenu\"], function() {\n\ton_load()\n      })\n      require([\"jspanel-dock\"], function() {\n\ton_load()\n      })\n      require([\"gridstack\"], function(GridStack) {\n\twindow.GridStack = GridStack\n\ton_load()\n      })\n      require([\"notyf\"], function() {\n\ton_load()\n      })\n      root._bokeh_is_loading = css_urls.length + 9;\n    } else {\n      root._bokeh_is_loading = css_urls.length + js_urls.length + js_modules.length + Object.keys(js_exports).length;\n    }\n\n    var existing_stylesheets = []\n    var links = document.getElementsByTagName('link')\n    for (var i = 0; i < links.length; i++) {\n      var link = links[i]\n      if (link.href != null) {\n\texisting_stylesheets.push(link.href)\n      }\n    }\n    for (var i = 0; i < css_urls.length; i++) {\n      var url = css_urls[i];\n      if (existing_stylesheets.indexOf(url) !== -1) {\n\ton_load()\n\tcontinue;\n      }\n      const element = document.createElement(\"link\");\n      element.onload = on_load;\n      element.onerror = on_error;\n      element.rel = \"stylesheet\";\n      element.type = \"text/css\";\n      element.href = url;\n      console.debug(\"Bokeh: injecting link tag for BokehJS stylesheet: \", url);\n      document.body.appendChild(element);\n    }    if (((window['jsPanel'] !== undefined) && (!(window['jsPanel'] instanceof HTMLElement))) || window.requirejs) {\n      var urls = ['https://cdn.holoviz.org/panel/1.3.1/dist/bundled/floatpanel/jspanel4@4.12.0/dist/jspanel.js', 'https://cdn.holoviz.org/panel/1.3.1/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/modal/jspanel.modal.js', 'https://cdn.holoviz.org/panel/1.3.1/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/tooltip/jspanel.tooltip.js', 'https://cdn.holoviz.org/panel/1.3.1/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/hint/jspanel.hint.js', 'https://cdn.holoviz.org/panel/1.3.1/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/layout/jspanel.layout.js', 'https://cdn.holoviz.org/panel/1.3.1/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/contextmenu/jspanel.contextmenu.js', 'https://cdn.holoviz.org/panel/1.3.1/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/dock/jspanel.dock.js'];\n      for (var i = 0; i < urls.length; i++) {\n        skip.push(urls[i])\n      }\n    }    if (((window['GridStack'] !== undefined) && (!(window['GridStack'] instanceof HTMLElement))) || window.requirejs) {\n      var urls = ['https://cdn.holoviz.org/panel/1.3.1/dist/bundled/gridstack/gridstack@7.2.3/dist/gridstack-all.js'];\n      for (var i = 0; i < urls.length; i++) {\n        skip.push(urls[i])\n      }\n    }    if (((window['Notyf'] !== undefined) && (!(window['Notyf'] instanceof HTMLElement))) || window.requirejs) {\n      var urls = ['https://cdn.holoviz.org/panel/1.3.1/dist/bundled/notificationarea/notyf@3/notyf.min.js'];\n      for (var i = 0; i < urls.length; i++) {\n        skip.push(urls[i])\n      }\n    }    var existing_scripts = []\n    var scripts = document.getElementsByTagName('script')\n    for (var i = 0; i < scripts.length; i++) {\n      var script = scripts[i]\n      if (script.src != null) {\n\texisting_scripts.push(script.src)\n      }\n    }\n    for (var i = 0; i < js_urls.length; i++) {\n      var url = js_urls[i];\n      if (skip.indexOf(url) !== -1 || existing_scripts.indexOf(url) !== -1) {\n\tif (!window.requirejs) {\n\t  on_load();\n\t}\n\tcontinue;\n      }\n      var element = document.createElement('script');\n      element.onload = on_load;\n      element.onerror = on_error;\n      element.async = false;\n      element.src = url;\n      console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n      document.head.appendChild(element);\n    }\n    for (var i = 0; i < js_modules.length; i++) {\n      var url = js_modules[i];\n      if (skip.indexOf(url) !== -1 || existing_scripts.indexOf(url) !== -1) {\n\tif (!window.requirejs) {\n\t  on_load();\n\t}\n\tcontinue;\n      }\n      var element = document.createElement('script');\n      element.onload = on_load;\n      element.onerror = on_error;\n      element.async = false;\n      element.src = url;\n      element.type = \"module\";\n      console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n      document.head.appendChild(element);\n    }\n    for (const name in js_exports) {\n      var url = js_exports[name];\n      if (skip.indexOf(url) >= 0 || root[name] != null) {\n\tif (!window.requirejs) {\n\t  on_load();\n\t}\n\tcontinue;\n      }\n      var element = document.createElement('script');\n      element.onerror = on_error;\n      element.async = false;\n      element.type = \"module\";\n      console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n      element.textContent = `\n      import ${name} from \"${url}\"\n      window.${name} = ${name}\n      window._bokeh_on_load()\n      `\n      document.head.appendChild(element);\n    }\n    if (!js_urls.length && !js_modules.length) {\n      on_load()\n    }\n  };\n\n  function inject_raw_css(css) {\n    const element = document.createElement(\"style\");\n    element.appendChild(document.createTextNode(css));\n    document.body.appendChild(element);\n  }\n\n  var js_urls = [\"https://cdn.bokeh.org/bokeh/release/bokeh-3.3.1.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-gl-3.3.1.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-widgets-3.3.1.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-tables-3.3.1.min.js\", \"https://cdn.holoviz.org/panel/1.3.1/dist/panel.min.js\", \"https://cdn.jsdelivr.net/npm/@holoviz/geoviews@1.11.0/dist/geoviews.min.js\"];\n  var js_modules = [];\n  var js_exports = {};\n  var css_urls = [];\n  var inline_js = [    function(Bokeh) {\n      Bokeh.set_log_level(\"info\");\n    },\nfunction(Bokeh) {} // ensure no trailing comma for IE\n  ];\n\n  function run_inline_js() {\n    if ((root.Bokeh !== undefined) || (force === true)) {\n      for (var i = 0; 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document.createElement(\"div\");\n    bk_div.innerHTML = output.data[HTML_MIME_TYPE];\n    var script_attrs = bk_div.children[0].attributes;\n    for (var i = 0; i < script_attrs.length; i++) {\n      toinsert[toinsert.length - 1].childNodes[1].setAttribute(script_attrs[i].name, script_attrs[i].value);\n    }\n    // store reference to server id on output_area\n    output_area._bokeh_server_id = output.metadata[EXEC_MIME_TYPE][\"server_id\"];\n  }\n}\n\n/**\n * Handle when an output is cleared or removed\n */\nfunction handle_clear_output(event, handle) {\n  var id = handle.cell.output_area._hv_plot_id;\n  var server_id = handle.cell.output_area._bokeh_server_id;\n  if (((id === undefined) || !(id in PyViz.plot_index)) && (server_id !== undefined)) { return; }\n  var comm = window.PyViz.comm_manager.get_client_comm(\"hv-extension-comm\", \"hv-extension-comm\", function () {});\n  if (server_id !== null) {\n    comm.send({event_type: 'server_delete', 'id': server_id});\n    return;\n  } else if (comm !== null) {\n    comm.send({event_type: 'delete', 'id': id});\n  }\n  delete PyViz.plot_index[id];\n  if ((window.Bokeh !== undefined) & (id in window.Bokeh.index)) {\n    var doc = window.Bokeh.index[id].model.document\n    doc.clear();\n    const i = window.Bokeh.documents.indexOf(doc);\n    if (i > -1) {\n      window.Bokeh.documents.splice(i, 1);\n    }\n  }\n}\n\n/**\n * Handle kernel restart event\n */\nfunction handle_kernel_cleanup(event, handle) {\n  delete PyViz.comms[\"hv-extension-comm\"];\n  window.PyViz.plot_index = {}\n}\n\n/**\n * Handle update_display_data messages\n */\nfunction handle_update_output(event, handle) {\n  handle_clear_output(event, {cell: {output_area: handle.output_area}})\n  handle_add_output(event, handle)\n}\n\nfunction register_renderer(events, OutputArea) {\n  function append_mime(data, metadata, element) {\n    // create a DOM node to render to\n    var toinsert = this.create_output_subarea(\n    metadata,\n    CLASS_NAME,\n    EXEC_MIME_TYPE\n    );\n    this.keyboard_manager.register_events(toinsert);\n    // Render to node\n    var props = {data: data, metadata: metadata[EXEC_MIME_TYPE]};\n    render(props, toinsert[0]);\n    element.append(toinsert);\n    return toinsert\n  }\n\n  events.on('output_added.OutputArea', handle_add_output);\n  events.on('output_updated.OutputArea', handle_update_output);\n  events.on('clear_output.CodeCell', handle_clear_output);\n  events.on('delete.Cell', handle_clear_output);\n  events.on('kernel_ready.Kernel', handle_kernel_cleanup);\n\n  OutputArea.prototype.register_mime_type(EXEC_MIME_TYPE, append_mime, {\n    safe: true,\n    index: 0\n  });\n}\n\nif (window.Jupyter !== undefined) {\n  try {\n    var events = require('base/js/events');\n    var OutputArea = require('notebook/js/outputarea').OutputArea;\n    if (OutputArea.prototype.mime_types().indexOf(EXEC_MIME_TYPE) == -1) {\n      register_renderer(events, OutputArea);\n    }\n  } catch(err) {\n  }\n}\n"
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "data": {
      "text/html": [
       "<style>*[data-root-id],\n",
       "*[data-root-id] > * {\n",
       "  box-sizing: border-box;\n",
       "  font-family: var(--jp-ui-font-family);\n",
       "  font-size: var(--jp-ui-font-size1);\n",
       "  color: var(--vscode-editor-foreground, var(--jp-ui-font-color1));\n",
       "}\n",
       "\n",
       "/* Override VSCode background color */\n",
       ".cell-output-ipywidget-background:has(\n",
       "    > .cell-output-ipywidget-background > .lm-Widget > *[data-root-id]\n",
       "  ),\n",
       ".cell-output-ipywidget-background:has(> .lm-Widget > *[data-root-id]) {\n",
       "  background-color: transparent !important;\n",
       "}\n",
       "</style>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
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     "data": {
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       "</div>\n",
       "<script type=\"application/javascript\">(function(root) {\n",
       "  var docs_json = {\"8ba0cda5-c5ff-49a1-bf73-b44d7a47411f\":{\"version\":\"3.3.1\",\"title\":\"Bokeh 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       "  var docs = Object.values(docs_json)\n",
       "  if (!docs) {\n",
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       "  const py_version = docs[0].version.replace('rc', '-rc.').replace('.dev', '-dev.')\n",
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       "    var Bokeh = get_bokeh(root)\n",
       "    Bokeh.embed.embed_items_notebook(docs_json, render_items);\n",
       "    for (const render_item of render_items) {\n",
       "      for (const root_id of render_item.root_ids) {\n",
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       "\tif (id_el.children.length && (id_el.children[0].className === 'bk-root')) {\n",
       "\t  const root_el = id_el.children[0]\n",
       "\t  root_el.id = root_el.id + '-rendered'\n",
       "\t}\n",
       "      }\n",
       "    }\n",
       "  }\n",
       "  function get_bokeh(root) {\n",
       "    if (root.Bokeh === undefined) {\n",
       "      return null\n",
       "    } else if (root.Bokeh.version !== py_version && !is_dev) {\n",
       "      if (root.Bokeh.versions === undefined || !root.Bokeh.versions.has(py_version)) {\n",
       "\treturn null\n",
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       "      return root.Bokeh.versions.get(py_version);\n",
       "    } else if (root.Bokeh.version === py_version) {\n",
       "      return root.Bokeh\n",
       "    }\n",
       "    return null\n",
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       "    var Bokeh = get_bokeh(root)\n",
       "    return (Bokeh != null && Bokeh.Panel !== undefined)\n",
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       "\n",
       "</div>\n"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "import clearwater_riverine as cwr"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "66bddd72-10d7-42f1-ad02-b8cc1e9a4cbf",
   "metadata": {},
   "source": [
    "### Import ClearWater-Modules"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "e56f2ee1-c9f6-4517-8f77-57d34c387b74",
   "metadata": {},
   "source": [
    "We will also need to install Clearwater Modules' `Energy Budget` module. While this package is also still under development, the best way to install is with `conda develop`. You will need to clone the [ClearWater Modules](https://github.com/EcohydrologyTeam/ClearWater-modules) repository. Then, use conda develop pointing to the path of your `clearwater-modules` folder like below.\n",
    "\n",
    "NOTE: You will need to find this path yourself. Remember that if your path has any blank spaces, you must enclose the path with quotes."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "id": "d081f53f-f7ef-4edb-81f2-e9cbcfcfabe6",
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "path exists, skipping C:\\Users\\sjordan\\OneDrive - LimnoTech\\Documents\\GitHub\\clearwater-riverine\\examples\\'\\Users\\aaufdenkampe\\Documents\\Python\\ClearWater-modules\\src'\n",
      "completed operation for: C:\\Users\\sjordan\\OneDrive - LimnoTech\\Documents\\GitHub\\clearwater-riverine\\examples\\'\\Users\\aaufdenkampe\\Documents\\Python\\ClearWater-modules\\src'\n"
     ]
    }
   ],
   "source": [
    "!conda develop '/Users/aaufdenkampe/Documents/Python/ClearWater-modules/src'"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "cd44e256",
   "metadata": {},
   "source": [
    "You now need to restart the Python kernel for this notebook, if the path didn't already exist."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "id": "ec258d25-c3b2-4b7e-a511-40f65c6058bc",
   "metadata": {},
   "outputs": [],
   "source": [
    "from clearwater_modules.nsm1.model import NutrientBudget\n",
    "from clearwater_modules.base import Model"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "fb9b46da-dde2-42ca-a156-4320b9b55ba3",
   "metadata": {},
   "source": [
    "## Instantiate Models\n",
    "### Clearwater-Riverine\n",
    "\n",
    "Ensure that you have followed the instructions in the Data Availability Section, and that you have all files downloaded from the [Google Drive](https://drive.google.com/drive/folders/19uCjAJPZh4g6r1ZWzk1D_B8jZGluSc4N?usp=drive_link) for `sumwere_creek_coarse_p48_NSMI` and saved/unzipped to your local directory `examples/data_temp`. For a more detailed explanation of all the steps in this process, please see [01_getting_started_riverine.ipynb](./01_getting_started_riverine.ipynb).\n",
    "\n",
    "This example sets up the model using a config file."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "id": "4779568f",
   "metadata": {},
   "outputs": [],
   "source": [
    "model_name = 'sumwere_creek_coarse_p48_NSMI'"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "id": "ae2ef0cd-b448-405a-bfb7-ea69f4bd638f",
   "metadata": {},
   "outputs": [],
   "source": [
    "# required for riverine\n",
    "test_case_path = project_path / 'examples/data_temp' / model_name\n",
    "riverine_config = test_case_path / 'demo_config.yml'\n",
    "\n",
    "# requierd information for modules\n",
    "    # please note that wetted surface area and air temp are not being used in this\n",
    "    # simulation, but will be used in another example of NSMI\n",
    "\n",
    "wetted_surface_area_path = test_case_path / \"wetted_surface_area.zarr\"\n",
    "q_solar_path = test_case_path / 'cwr_boundary_conditions_q_solar_p28.csv'\n",
    "air_temp_path = test_case_path / 'cwr_boundary_conditions_TairC_p28.csv'"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "id": "8a8eb193",
   "metadata": {},
   "outputs": [],
   "source": [
    "start_index = int(8*60*(60/30))  # start at 8:00 am on the first day of the simulation (30 second model)\n",
    "end_index = start_index + int(24*60*(60/30))  # end 24 hours later (30 second model)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 12,
   "id": "de6f3781",
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Populating Model Mesh...\n",
      "Calculating Required Parameters...\n",
      "CPU times: total: 1.91 s\n",
      "Wall time: 2.25 s\n"
     ]
    }
   ],
   "source": [
    "%%time\n",
    "transport_model = cwr.ClearwaterRiverine(\n",
    "    config_filepath = riverine_config,\n",
    "    verbose=True,\n",
    "    datetime_range= (start_index, end_index)\n",
    ")"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "dcfb43d5-07c5-4c4a-842c-438734b71767",
   "metadata": {},
   "source": [
    "The Clearwater Riverine currently has the cell surface area, not the *wetted* cell surface area, as required for TSM. Ultimately, we will work on incorporating this calculation into Clearwater Riverine; however, for the sake of this example, we have the wetted surface areas saved in a zarr. This example of NSMI does not use wetted cell surface area, but we are leaving it in this notebook because a future example will couple TSM and NSMI."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 13,
   "id": "c0132f5a-2c31-4484-9680-44cb37407fd4",
   "metadata": {},
   "outputs": [],
   "source": [
    "wetted_sa = xr.open_zarr(wetted_surface_area_path)\n",
    "wetted_sa = wetted_sa.compute()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 14,
   "id": "6365f6de-a977-4975-a4fb-ad1f2b2275d3",
   "metadata": {},
   "outputs": [],
   "source": [
    "wetted_sa_subset = wetted_sa.isel(time=slice(start_index, end_index+1))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 15,
   "id": "a2846c4d-d26f-4ed4-b86e-6624aba1e696",
   "metadata": {},
   "outputs": [],
   "source": [
    "transport_model.mesh['wetted_surface_area'] = xr.DataArray(\n",
    "    wetted_sa_subset['wetted_surface_area'].values,\n",
    "    dims=('time', 'nface')\n",
    ")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 16,
   "id": "c14fc85a",
   "metadata": {},
   "outputs": [
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       "\n",
       ".xr-sections {\n",
       "  padding-left: 0 !important;\n",
       "  display: grid;\n",
       "  grid-template-columns: 150px auto auto 1fr 20px 20px;\n",
       "}\n",
       "\n",
       ".xr-section-item {\n",
       "  display: contents;\n",
       "}\n",
       "\n",
       ".xr-section-item input {\n",
       "  display: none;\n",
       "}\n",
       "\n",
       ".xr-section-item input + label {\n",
       "  color: var(--xr-disabled-color);\n",
       "}\n",
       "\n",
       ".xr-section-item input:enabled + label {\n",
       "  cursor: pointer;\n",
       "  color: var(--xr-font-color2);\n",
       "}\n",
       "\n",
       ".xr-section-item input:enabled + label:hover {\n",
       "  color: var(--xr-font-color0);\n",
       "}\n",
       "\n",
       ".xr-section-summary {\n",
       "  grid-column: 1;\n",
       "  color: var(--xr-font-color2);\n",
       "  font-weight: 500;\n",
       "}\n",
       "\n",
       ".xr-section-summary > span {\n",
       "  display: inline-block;\n",
       "  padding-left: 0.5em;\n",
       "}\n",
       "\n",
       ".xr-section-summary-in:disabled + label {\n",
       "  color: var(--xr-font-color2);\n",
       "}\n",
       "\n",
       ".xr-section-summary-in + label:before {\n",
       "  display: inline-block;\n",
       "  content: '►';\n",
       "  font-size: 11px;\n",
       "  width: 15px;\n",
       "  text-align: center;\n",
       "}\n",
       "\n",
       ".xr-section-summary-in:disabled + label:before {\n",
       "  color: var(--xr-disabled-color);\n",
       "}\n",
       "\n",
       ".xr-section-summary-in:checked + label:before {\n",
       "  content: '▼';\n",
       "}\n",
       "\n",
       ".xr-section-summary-in:checked + label > span {\n",
       "  display: none;\n",
       "}\n",
       "\n",
       ".xr-section-summary,\n",
       ".xr-section-inline-details {\n",
       "  padding-top: 4px;\n",
       "  padding-bottom: 4px;\n",
       "}\n",
       "\n",
       ".xr-section-inline-details {\n",
       "  grid-column: 2 / -1;\n",
       "}\n",
       "\n",
       ".xr-section-details {\n",
       "  display: none;\n",
       "  grid-column: 1 / -1;\n",
       "  margin-bottom: 5px;\n",
       "}\n",
       "\n",
       ".xr-section-summary-in:checked ~ .xr-section-details {\n",
       "  display: contents;\n",
       "}\n",
       "\n",
       ".xr-array-wrap {\n",
       "  grid-column: 1 / -1;\n",
       "  display: grid;\n",
       "  grid-template-columns: 20px auto;\n",
       "}\n",
       "\n",
       ".xr-array-wrap > label {\n",
       "  grid-column: 1;\n",
       "  vertical-align: top;\n",
       "}\n",
       "\n",
       ".xr-preview {\n",
       "  color: var(--xr-font-color3);\n",
       "}\n",
       "\n",
       ".xr-array-preview,\n",
       ".xr-array-data {\n",
       "  padding: 0 5px !important;\n",
       "  grid-column: 2;\n",
       "}\n",
       "\n",
       ".xr-array-data,\n",
       ".xr-array-in:checked ~ .xr-array-preview {\n",
       "  display: none;\n",
       "}\n",
       "\n",
       ".xr-array-in:checked ~ .xr-array-data,\n",
       ".xr-array-preview {\n",
       "  display: inline-block;\n",
       "}\n",
       "\n",
       ".xr-dim-list {\n",
       "  display: inline-block !important;\n",
       "  list-style: none;\n",
       "  padding: 0 !important;\n",
       "  margin: 0;\n",
       "}\n",
       "\n",
       ".xr-dim-list li {\n",
       "  display: inline-block;\n",
       "  padding: 0;\n",
       "  margin: 0;\n",
       "}\n",
       "\n",
       ".xr-dim-list:before {\n",
       "  content: '(';\n",
       "}\n",
       "\n",
       ".xr-dim-list:after {\n",
       "  content: ')';\n",
       "}\n",
       "\n",
       ".xr-dim-list li:not(:last-child):after {\n",
       "  content: ',';\n",
       "  padding-right: 5px;\n",
       "}\n",
       "\n",
       ".xr-has-index {\n",
       "  font-weight: bold;\n",
       "}\n",
       "\n",
       ".xr-var-list,\n",
       ".xr-var-item {\n",
       "  display: contents;\n",
       "}\n",
       "\n",
       ".xr-var-item > div,\n",
       ".xr-var-item label,\n",
       ".xr-var-item > .xr-var-name span {\n",
       "  background-color: var(--xr-background-color-row-even);\n",
       "  margin-bottom: 0;\n",
       "}\n",
       "\n",
       ".xr-var-item > .xr-var-name:hover span {\n",
       "  padding-right: 5px;\n",
       "}\n",
       "\n",
       ".xr-var-list > li:nth-child(odd) > div,\n",
       ".xr-var-list > li:nth-child(odd) > label,\n",
       ".xr-var-list > li:nth-child(odd) > .xr-var-name span {\n",
       "  background-color: var(--xr-background-color-row-odd);\n",
       "}\n",
       "\n",
       ".xr-var-name {\n",
       "  grid-column: 1;\n",
       "}\n",
       "\n",
       ".xr-var-dims {\n",
       "  grid-column: 2;\n",
       "}\n",
       "\n",
       ".xr-var-dtype {\n",
       "  grid-column: 3;\n",
       "  text-align: right;\n",
       "  color: var(--xr-font-color2);\n",
       "}\n",
       "\n",
       ".xr-var-preview {\n",
       "  grid-column: 4;\n",
       "}\n",
       "\n",
       ".xr-index-preview {\n",
       "  grid-column: 2 / 5;\n",
       "  color: var(--xr-font-color2);\n",
       "}\n",
       "\n",
       ".xr-var-name,\n",
       ".xr-var-dims,\n",
       ".xr-var-dtype,\n",
       ".xr-preview,\n",
       ".xr-attrs dt {\n",
       "  white-space: nowrap;\n",
       "  overflow: hidden;\n",
       "  text-overflow: ellipsis;\n",
       "  padding-right: 10px;\n",
       "}\n",
       "\n",
       ".xr-var-name:hover,\n",
       ".xr-var-dims:hover,\n",
       ".xr-var-dtype:hover,\n",
       ".xr-attrs dt:hover {\n",
       "  overflow: visible;\n",
       "  width: auto;\n",
       "  z-index: 1;\n",
       "}\n",
       "\n",
       ".xr-var-attrs,\n",
       ".xr-var-data,\n",
       ".xr-index-data {\n",
       "  display: none;\n",
       "  background-color: var(--xr-background-color) !important;\n",
       "  padding-bottom: 5px !important;\n",
       "}\n",
       "\n",
       ".xr-var-attrs-in:checked ~ .xr-var-attrs,\n",
       ".xr-var-data-in:checked ~ .xr-var-data,\n",
       ".xr-index-data-in:checked ~ .xr-index-data {\n",
       "  display: block;\n",
       "}\n",
       "\n",
       ".xr-var-data > table {\n",
       "  float: right;\n",
       "}\n",
       "\n",
       ".xr-var-name span,\n",
       ".xr-var-data,\n",
       ".xr-index-name div,\n",
       ".xr-index-data,\n",
       ".xr-attrs {\n",
       "  padding-left: 25px !important;\n",
       "}\n",
       "\n",
       ".xr-attrs,\n",
       ".xr-var-attrs,\n",
       ".xr-var-data,\n",
       ".xr-index-data {\n",
       "  grid-column: 1 / -1;\n",
       "}\n",
       "\n",
       "dl.xr-attrs {\n",
       "  padding: 0;\n",
       "  margin: 0;\n",
       "  display: grid;\n",
       "  grid-template-columns: 125px auto;\n",
       "}\n",
       "\n",
       ".xr-attrs dt,\n",
       ".xr-attrs dd {\n",
       "  padding: 0;\n",
       "  margin: 0;\n",
       "  float: left;\n",
       "  padding-right: 10px;\n",
       "  width: auto;\n",
       "}\n",
       "\n",
       ".xr-attrs dt {\n",
       "  font-weight: normal;\n",
       "  grid-column: 1;\n",
       "}\n",
       "\n",
       ".xr-attrs dt:hover span {\n",
       "  display: inline-block;\n",
       "  background: var(--xr-background-color);\n",
       "  padding-right: 10px;\n",
       "}\n",
       "\n",
       ".xr-attrs dd {\n",
       "  grid-column: 2;\n",
       "  white-space: pre-wrap;\n",
       "  word-break: break-all;\n",
       "}\n",
       "\n",
       ".xr-icon-database,\n",
       ".xr-icon-file-text2,\n",
       ".xr-no-icon {\n",
       "  display: inline-block;\n",
       "  vertical-align: middle;\n",
       "  width: 1em;\n",
       "  height: 1.5em !important;\n",
       "  stroke-width: 0;\n",
       "  stroke: currentColor;\n",
       "  fill: currentColor;\n",
       "}\n",
       "</style><pre class='xr-text-repr-fallback'>&lt;xarray.Dataset&gt;\n",
       "Dimensions:                  (node: 549, time: 2881, nface: 444, nmax_face: 8,\n",
       "                              nedge: 915, 2: 2)\n",
       "Coordinates:\n",
       "    node_x                   (node) float64 5.004e+05 5.005e+05 ... 5.024e+05\n",
       "    node_y                   (node) float64 2.381e+03 2.376e+03 ... 500.0 500.0\n",
       "  * time                     (time) datetime64[ns] 2022-05-13T08:00:00 ... 20...\n",
       "    face_x                   (nface) float64 5.005e+05 5.006e+05 ... 5.024e+05\n",
       "    face_y                   (nface) float64 2.45e+03 2.45e+03 ... 500.0 564.4\n",
       "Dimensions without coordinates: node, nface, nmax_face, nedge, 2\n",
       "Data variables: (12/40)\n",
       "    mesh2d                   int32 0\n",
       "    face_nodes               (nface, nmax_face) int32 0 1 2 3 ... -1 -1 -1 -1\n",
       "    edge_nodes               (nedge, 2) int32 0 1 1 2 2 3 ... 43 547 418 548 519\n",
       "    edge_face_connectivity   (nedge, 2) int32 0 207 0 208 0 ... 194 442 329 443\n",
       "    edges_face1              (nedge) int32 0 0 0 0 207 207 ... 366 0 19 194 329\n",
       "    edges_face2              (nedge) int32 207 208 1 367 208 ... 440 441 442 443\n",
       "    ...                       ...\n",
       "    DIC                      (time, nface) float64 1.0 1.0 1.0 ... nan nan nan\n",
       "    POM                      (time, nface) float64 1.0 1.0 1.0 ... nan nan nan\n",
       "    CBOD                     (time, nface) float64 1.0 1.0 1.0 ... nan nan nan\n",
       "    PX                       (time, nface) float64 1.0 1.0 1.0 ... nan nan nan\n",
       "    Alk                      (time, nface) float64 1.0 1.0 1.0 ... nan nan nan\n",
       "    wetted_surface_area      (time, nface) float64 0.0 0.0 0.0 ... 0.0 0.0 0.0\n",
       "Attributes: (12/13)\n",
       "    Conventions:                       CF-1.8 UGRID-1.0 Deltares-0.10\n",
       "    diffusion_coefficient:             0.1\n",
       "    volume_calculation_required:       False\n",
       "    face_area_calculation_required:    False\n",
       "    face_area_elevation_info:          Empty DataFrame\\nColumns: []\\nIndex: []\n",
       "    face_area_elevation_values:        Empty DataFrame\\nColumns: []\\nIndex: []\n",
       "    ...                                ...\n",
       "    face_cell_indexes_df:              Empty DataFrame\\nColumns: []\\nIndex: []\n",
       "    face_volume_elevation_info:        Empty DataFrame\\nColumns: []\\nIndex: []\n",
       "    face_volume_elevation_values:      Empty DataFrame\\nColumns: []\\nIndex: []\n",
       "    boundary_data:                     Empty DataFrame\\nColumns: []\\nIndex: []\n",
       "    units:                             Metric\n",
       "    nreal:                             366</pre><div class='xr-wrap' style='display:none'><div class='xr-header'><div class='xr-obj-type'>xarray.Dataset</div></div><ul class='xr-sections'><li class='xr-section-item'><input id='section-c16dcb33-6662-41a9-a52c-c140657023da' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-c16dcb33-6662-41a9-a52c-c140657023da' class='xr-section-summary'  title='Expand/collapse section'>Dimensions:</label><div class='xr-section-inline-details'><ul class='xr-dim-list'><li><span>node</span>: 549</li><li><span class='xr-has-index'>time</span>: 2881</li><li><span>nface</span>: 444</li><li><span>nmax_face</span>: 8</li><li><span>nedge</span>: 915</li><li><span>2</span>: 2</li></ul></div><div class='xr-section-details'></div></li><li class='xr-section-item'><input id='section-6689606d-7005-408c-8cdb-e53a35e53e20' class='xr-section-summary-in' type='checkbox'  checked><label for='section-6689606d-7005-408c-8cdb-e53a35e53e20' class='xr-section-summary' >Coordinates: <span>(5)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'><li class='xr-var-item'><div class='xr-var-name'><span>node_x</span></div><div class='xr-var-dims'>(node)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>5.004e+05 5.005e+05 ... 5.024e+05</div><input id='attrs-0556eb58-044b-4e0e-8326-077bec1eb42f' class='xr-var-attrs-in' type='checkbox' disabled><label for='attrs-0556eb58-044b-4e0e-8326-077bec1eb42f' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-5a2a8181-bd55-4c2e-805c-d6a25666bb03' class='xr-var-data-in' type='checkbox'><label for='data-5a2a8181-bd55-4c2e-805c-d6a25666bb03' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'></dl></div><div class='xr-var-data'><pre>array([500400.00000001, 500485.77497549, 500500.00000001, 500500.00000001,\n",
       "       500588.70786068, 500600.00000001, 500600.00000001, 500691.21118046,\n",
       "       500700.00000001, 500700.00000001, 500800.00000001, 500800.00000001,\n",
       "       500793.47107692, 500900.00000001, 500900.00000001, 501000.00000001,\n",
       "       501000.00000001, 501100.00000001, 501100.00000001, 501200.00000001,\n",
       "       501200.00000001, 501300.00000001, 501300.00000001, 501400.00000001,\n",
       "       501400.00000001, 501500.00000001, 501500.00000001, 501569.52150026,\n",
       "       501600.00000001, 501600.00000001, 501700.00000001, 501700.00000001,\n",
       "       501800.00000001, 501800.00000001, 501900.00000001, 501900.00000001,\n",
       "       502000.00000001, 502000.00000001, 502100.00000001, 502100.00000001,\n",
       "       502200.00000001, 502200.00000001, 502300.00000001, 502300.00000001,\n",
       "       502400.        , 501700.00000001, 501602.19164361, 501706.52881355,\n",
       "       501800.00000001, 501810.06547903, 501900.00000001, 501910.9511348 ,\n",
       "       501967.38330336, 502000.00000001, 502100.00000001, 502200.00000001,\n",
       "       502300.00000001, 502400.        , 502001.40752427, 502100.00000001,\n",
       "       502166.30287737, 502200.00000001, 502116.51457194, 502300.00000001,\n",
       "       502400.        , 500700.00000001, 500700.00000001, 500604.03141216,\n",
       "       500565.8370389 , 500600.00000001, 500800.00000001, 500800.00000001,\n",
       "       500839.59417791, 500900.00000001, 500900.00000001, 500895.27352363,\n",
       "       501000.00000001, 501000.00000001, 500993.46557737, 500967.47405019,\n",
       "...\n",
       "       501433.01538715, 501370.76144742, 501324.47264009, 501420.97411405,\n",
       "       501286.17253587, 501215.1010291 , 501145.24499223, 501060.47697569,\n",
       "       500965.65553841, 500869.92689859, 500785.19488662, 500708.43792557,\n",
       "       500639.76098268, 500732.03806137, 500589.28674574, 500627.49956643,\n",
       "       500729.18077917, 500821.63647053, 500915.63945653, 501010.210723  ,\n",
       "       501104.78235716, 501199.01018726, 501292.48977967, 501310.81525422,\n",
       "       501384.7747243 , 501407.32523181, 501373.39975232, 501474.84730718,\n",
       "       501507.21324787, 501451.16145605, 501561.83423686, 501612.7973118 ,\n",
       "       501527.00650264, 501641.59887177, 501707.62190871, 501853.98648974,\n",
       "       501756.61238209, 501802.6867799 , 501899.14757467, 501906.20985598,\n",
       "       501858.88538519, 501955.77854696, 501932.49255572, 502016.22338546,\n",
       "       502107.15793419, 502202.77367074, 502300.86497163, 502400.        ,\n",
       "       501669.735584  , 501669.08400404, 501718.80521364, 502170.55268771,\n",
       "       502286.8767108 , 501391.83310031, 501472.31019726, 501552.78729421,\n",
       "       500914.35228762, 500953.79804404, 500982.5929238 , 501068.40430883,\n",
       "       501154.21569386, 501240.02707889, 501325.83846392, 501411.64984895,\n",
       "       501497.46123398, 501583.27261901, 501126.9083414 , 501987.79523573,\n",
       "       502069.38061548, 502150.96599523, 502232.55137497, 502314.13675472,\n",
       "       502400.        , 500400.00000001, 502400.        , 500400.00000001,\n",
       "       502400.        ])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>node_y</span></div><div class='xr-var-dims'>(node)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>2.381e+03 2.376e+03 ... 500.0 500.0</div><input id='attrs-ef5881db-e55d-431b-9780-c811b5c84343' class='xr-var-attrs-in' type='checkbox' disabled><label for='attrs-ef5881db-e55d-431b-9780-c811b5c84343' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-8729d61c-5ce1-4edf-a6a4-a4ac41feaa6c' class='xr-var-data-in' type='checkbox'><label for='data-8729d61c-5ce1-4edf-a6a4-a4ac41feaa6c' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'></dl></div><div class='xr-var-data'><pre>array([2380.90844004, 2376.4242409 , 2386.5131813 , 2500.00000004,\n",
       "       2382.05515883, 2390.58648094, 2500.00000004, 2385.78843387,\n",
       "       2392.78377471, 2500.00000004, 2393.79033837, 2500.00000004,\n",
       "       2388.48706572, 2389.30550178, 2500.00000004, 2389.53976159,\n",
       "       2500.00000004, 2388.93368814, 2500.00000004, 2387.87016137,\n",
       "       2500.00000004, 2385.0111151 , 2500.00000004, 2380.82980762,\n",
       "       2500.00000004, 2375.58197869, 2500.00000004, 2369.52150028,\n",
       "       2400.00000004, 2500.00000004, 2400.00000004, 2500.00000004,\n",
       "       2400.00000004, 2500.00000004, 2400.00000004, 2500.00000004,\n",
       "       2400.00000004, 2500.00000004, 2400.00000004, 2500.00000004,\n",
       "       2400.00000004, 2500.00000004, 2400.00000004, 2500.00000004,\n",
       "       2400.00000004, 2308.32143068, 2313.00784877, 2299.67952535,\n",
       "       2296.40094488, 2286.32871568, 2280.68585708, 2271.69203231,\n",
       "       2267.38330338, 2300.00000004, 2300.00000004, 2300.00000004,\n",
       "       2300.00000004, 2300.00000004, 2205.36938753, 2191.56219523,\n",
       "       2166.30287739, 2200.00000004, 2172.88097567, 2200.00000004,\n",
       "       2200.00000004, 2100.00000004, 2188.06534731, 2188.4064972 ,\n",
       "       2134.16296114, 2100.00000004, 2100.00000004, 2192.16172881,\n",
       "       2060.40582214, 2082.7151293 , 2188.63954438, 2193.97381478,\n",
       "       2079.24689484, 2187.54699109, 2194.92339133, 2062.92553287,\n",
       "...\n",
       "       1574.46604825, 1692.87334217, 1602.11401753, 1569.28369981,\n",
       "       1744.62609645, 1813.65814182, 1883.95778688, 1935.07168374,\n",
       "       1962.5094257 , 1938.57242587, 1887.49633686, 1824.6640322 ,\n",
       "       1753.75463832, 1682.71480012, 1670.30219739, 1601.70789602,\n",
       "       1543.91149935, 1507.76082915, 1475.7046162 , 1445.3451056 ,\n",
       "       1414.98547697, 1383.58375943, 1350.04347939, 1398.53743517,\n",
       "       1313.38515965, 1365.8348983 , 1418.68019888, 1271.64040499,\n",
       "       1335.65219895, 1384.66220145, 1223.8612233 , 1303.49585367,\n",
       "       1344.57674956, 1164.93432734, 1091.03052452, 1057.94121482,\n",
       "       1004.77647748,  916.90101601,  975.08016656, 1029.36431669,\n",
       "        835.22140621,  920.16789682,  768.82181313,  715.64764977,\n",
       "        675.95857263,  649.38625771,  634.18044155,  628.82701829,\n",
       "        957.34218027,  913.14917144,  866.29825148,  500.        ,\n",
       "        500.        , 1477.0336195 , 1451.61159081, 1426.18956212,\n",
       "        500.        ,  500.        ,  577.88608574,  619.79397145,\n",
       "        661.70185716,  703.60974288,  745.51762859,  787.4255143 ,\n",
       "        829.33340001,  871.24128573,  500.        , 1069.2765888 ,\n",
       "       1109.18886091, 1149.10113301, 1189.01340512, 1228.92567723,\n",
       "       1204.01423819, 2500.00000004, 2500.00000004,  500.        ,\n",
       "        500.        ])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span class='xr-has-index'>time</span></div><div class='xr-var-dims'>(time)</div><div class='xr-var-dtype'>datetime64[ns]</div><div class='xr-var-preview xr-preview'>2022-05-13T08:00:00 ... 2022-05-...</div><input id='attrs-e41a546a-c8e1-4b7d-9efa-afaad3376c6f' class='xr-var-attrs-in' type='checkbox' disabled><label for='attrs-e41a546a-c8e1-4b7d-9efa-afaad3376c6f' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-a9dd5e98-55c6-4bbb-8e61-c9e9eb7fa56c' class='xr-var-data-in' type='checkbox'><label for='data-a9dd5e98-55c6-4bbb-8e61-c9e9eb7fa56c' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'></dl></div><div class='xr-var-data'><pre>array([&#x27;2022-05-13T08:00:00.000000000&#x27;, &#x27;2022-05-13T08:00:30.000000000&#x27;,\n",
       "       &#x27;2022-05-13T08:01:00.000000000&#x27;, ..., &#x27;2022-05-14T07:59:00.000000000&#x27;,\n",
       "       &#x27;2022-05-14T07:59:30.000000000&#x27;, &#x27;2022-05-14T08:00:00.000000000&#x27;],\n",
       "      dtype=&#x27;datetime64[ns]&#x27;)</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>face_x</span></div><div class='xr-var-dims'>(nface)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>5.005e+05 5.006e+05 ... 5.024e+05</div><input id='attrs-0fc5fa31-fb38-4bef-a33b-6f7c01563c81' class='xr-var-attrs-in' type='checkbox' disabled><label for='attrs-0fc5fa31-fb38-4bef-a33b-6f7c01563c81' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-b0b9de23-2038-4280-a976-3088b0705579' class='xr-var-data-in' type='checkbox'><label for='data-b0b9de23-2038-4280-a976-3088b0705579' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'></dl></div><div class='xr-var-data'><pre>array([500450.00000001, 500550.00000001, 500650.00000001, 500750.00000001,\n",
       "       500850.00000001, 500950.00000001, 501050.00000001, 501150.00000001,\n",
       "       501250.00000001, 501350.00000001, 501450.00000001, 501550.00000001,\n",
       "       501650.00000001, 501750.00000001, 501850.00000001, 501950.00000001,\n",
       "       502050.00000001, 502150.00000001, 502250.00000001, 502350.00000001,\n",
       "       501650.00000001, 501750.00000001, 501850.00000001, 501950.00000001,\n",
       "       502050.00000001, 502150.00000001, 502250.00000001, 502350.00000001,\n",
       "       502050.00000001, 502150.00000001, 502250.00000001, 502350.00000001,\n",
       "       500650.00000001, 500750.00000001, 500850.00000001, 500950.00000001,\n",
       "       501050.00000001, 501150.00000001, 502250.00000001, 502350.00000001,\n",
       "       500450.00000001, 500550.00000001, 500650.00000001, 500750.00000001,\n",
       "       501150.00000001, 501250.00000001, 501350.00000001, 501450.00000001,\n",
       "       501550.00000001, 501650.00000001, 501750.00000001, 502350.00000001,\n",
       "       500450.00000001, 500550.00000001, 500650.00000001, 501350.00000001,\n",
       "       501450.00000001, 501550.00000001, 501650.00000001, 501750.00000001,\n",
       "       501850.00000001, 501950.00000001, 502350.00000001, 500450.00000001,\n",
       "       500550.00000001, 501450.00000001, 501550.00000001, 501650.00000001,\n",
       "       501750.00000001, 501850.00000001, 501950.00000001, 502050.00000001,\n",
       "       502350.00000001, 500450.00000001, 500850.00000001, 500950.00000001,\n",
       "       501050.00000001, 501650.00000001, 501750.00000001, 501850.00000001,\n",
       "...\n",
       "       502132.14540178, 502213.73078153, 502295.31616128, 500450.00000001,\n",
       "       500400.00000001, 500850.00000001, 500950.00000001, 502400.        ,\n",
       "       500550.00000001, 500750.00000001, 500650.00000001, 501050.00000001,\n",
       "       501150.00000001, 501250.00000001, 501350.00000001, 501450.00000001,\n",
       "       501550.00000001, 501650.00000001, 501750.00000001, 501850.00000001,\n",
       "       501950.00000001, 502050.00000001, 502150.00000001, 502250.00000001,\n",
       "       502400.        , 502400.        , 502400.        , 502400.        ,\n",
       "       502400.        , 502400.        , 502400.        , 502400.        ,\n",
       "       500400.00000001, 500400.00000001, 500400.00000001, 502400.        ,\n",
       "       500400.00000001, 500400.00000001, 502400.        , 500400.00000001,\n",
       "       500400.00000001, 500400.00000001, 500400.00000001, 502400.        ,\n",
       "       502400.        , 500400.00000001, 502400.        , 500400.00000001,\n",
       "       500400.00000001, 500400.00000001, 502343.4383554 , 500400.00000001,\n",
       "       502400.        , 500400.00000001, 501850.00000001, 500400.00000001,\n",
       "       500550.00000001, 500748.8225405 , 500855.9986843 , 501231.5056931 ,\n",
       "       501350.00000001, 500934.07516583, 500650.00000001, 500400.00000001,\n",
       "       501450.00000001, 501950.00000001, 501550.00000001, 501650.00000001,\n",
       "       501750.00000001, 501040.35319272, 502162.13636585, 502228.71469925,\n",
       "       502076.860022  , 502400.        , 501144.9598638 , 502400.        ,\n",
       "       500400.00000001, 502350.00000001, 500450.00000001, 502400.        ])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>face_y</span></div><div class='xr-var-dims'>(nface)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>2.45e+03 2.45e+03 ... 500.0 564.4</div><input id='attrs-9a2b3ca1-086b-4569-a366-d99daf3227f1' class='xr-var-attrs-in' type='checkbox' disabled><label for='attrs-9a2b3ca1-086b-4569-a366-d99daf3227f1' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-3a9147e9-37f9-40e0-9ff8-568e9c06cd18' class='xr-var-data-in' type='checkbox'><label for='data-3a9147e9-37f9-40e0-9ff8-568e9c06cd18' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'></dl></div><div class='xr-var-data'><pre>array([2450.00000004, 2450.00000004, 2450.00000004, 2450.00000004,\n",
       "       2450.00000004, 2450.00000004, 2450.00000004, 2450.00000004,\n",
       "       2450.00000004, 2450.00000004, 2450.00000004, 2450.00000004,\n",
       "       2450.00000004, 2450.00000004, 2450.00000004, 2450.00000004,\n",
       "       2450.00000004, 2450.00000004, 2450.00000004, 2450.00000004,\n",
       "       2350.00000004, 2350.00000004, 2350.00000004, 2350.00000004,\n",
       "       2350.00000004, 2350.00000004, 2350.00000004, 2350.00000004,\n",
       "       2250.00000004, 2250.00000004, 2250.00000004, 2250.00000004,\n",
       "       2150.00000004, 2150.00000004, 2150.00000004, 2150.00000004,\n",
       "       2150.00000004, 2150.00000004, 2150.00000004, 2150.00000004,\n",
       "       2050.00000004, 2050.00000004, 2050.00000004, 2050.00000004,\n",
       "       2050.00000004, 2050.00000004, 2050.00000004, 2050.00000004,\n",
       "       2050.00000004, 2050.00000004, 2050.00000004, 2050.00000004,\n",
       "       1950.00000004, 1950.00000004, 1950.00000004, 1950.00000004,\n",
       "       1950.00000004, 1950.00000004, 1950.00000004, 1950.00000004,\n",
       "       1950.00000004, 1950.00000004, 1950.00000004, 1850.00000004,\n",
       "       1850.00000004, 1850.00000004, 1850.00000004, 1850.00000004,\n",
       "       1850.00000004, 1850.00000004, 1850.00000004, 1850.00000004,\n",
       "       1850.00000004, 1750.00000004, 1750.00000004, 1750.00000004,\n",
       "       1750.00000004, 1750.00000004, 1750.00000004, 1750.00000004,\n",
       "...\n",
       "       1084.23144691, 1124.14371901, 1164.05599112, 2500.00000004,\n",
       "       2315.84861428, 2500.00000004, 2500.00000004, 2450.00000004,\n",
       "       2500.00000004, 2500.00000004, 2500.00000004, 2500.00000004,\n",
       "       2500.00000004, 2500.00000004, 2500.00000004, 2500.00000004,\n",
       "       2500.00000004, 2500.00000004, 2500.00000004, 2500.00000004,\n",
       "       2500.00000004, 2500.00000004, 2500.00000004, 2500.00000004,\n",
       "       2350.00000004, 2250.00000004, 2150.00000004, 1750.00000004,\n",
       "       1850.00000004, 2050.00000004, 1550.00000004, 1432.75636654,\n",
       "       2190.85252633, 2065.45813209, 1950.00000004, 1950.00000004,\n",
       "       1850.00000004, 1750.00000004, 1650.00000004, 1650.00000004,\n",
       "       1550.00000004, 1450.00000004, 1350.00000004, 1072.05468561,\n",
       "       1284.76348562, 1250.00000004,  950.00000004, 1150.00000004,\n",
       "       1050.00000004,  950.00000004,  500.        ,  850.00000004,\n",
       "        833.3069116 ,  750.00000004,  500.        ,  650.00000004,\n",
       "        500.        ,  500.        ,  500.        ,  500.        ,\n",
       "        500.        ,  500.        ,  500.        ,  550.00000002,\n",
       "        500.        ,  500.        ,  500.        ,  500.        ,\n",
       "        500.        ,  500.        ,  500.        ,  500.        ,\n",
       "        500.        ,  697.72042073,  500.        , 1174.06180468,\n",
       "       2440.45422004, 2500.00000004,  500.        ,  564.41350915])</pre></div></li></ul></div></li><li class='xr-section-item'><input id='section-3b659d0d-79c3-4a20-a60d-a081aa8dcdf5' class='xr-section-summary-in' type='checkbox'  ><label for='section-3b659d0d-79c3-4a20-a60d-a081aa8dcdf5' class='xr-section-summary' >Data variables: <span>(40)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'><li class='xr-var-item'><div class='xr-var-name'><span>mesh2d</span></div><div class='xr-var-dims'>()</div><div class='xr-var-dtype'>int32</div><div class='xr-var-preview xr-preview'>0</div><input id='attrs-5ca24783-934c-4023-8fb7-889a70fe2d15' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-5ca24783-934c-4023-8fb7-889a70fe2d15' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-365c4503-a582-4d82-8066-80e37209527b' class='xr-var-data-in' type='checkbox'><label for='data-365c4503-a582-4d82-8066-80e37209527b' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>cf_role :</span></dt><dd>mesh_topology</dd><dt><span>long_name :</span></dt><dd>Topology data of 2D mesh</dd><dt><span>topology_dimension :</span></dt><dd>2</dd><dt><span>node_coordinates :</span></dt><dd>node_x node_y</dd><dt><span>face_node_connectivity :</span></dt><dd>face_nodes</dd><dt><span>face_dimension :</span></dt><dd>face</dd><dt><span>edge_node_connectivity :</span></dt><dd>edge_nodes</dd><dt><span>edge_dimension :</span></dt><dd>edge</dd><dt><span>face_edge_connectivity :</span></dt><dd>face_edges</dd><dt><span>face_face_connectivity :</span></dt><dd>face_face_connectivity</dd><dt><span>edge_face_connectivity :</span></dt><dd>edge_face_connectivity</dd><dt><span>boundary_node_connectivity :</span></dt><dd>boundary_node_connectivity</dd><dt><span>face_coordinates :</span></dt><dd>face x face_y</dd><dt><span>edge_coordinates :</span></dt><dd>edge_x edge_y</dd></dl></div><div class='xr-var-data'><pre>array(0)</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>face_nodes</span></div><div class='xr-var-dims'>(nface, nmax_face)</div><div class='xr-var-dtype'>int32</div><div class='xr-var-preview xr-preview'>0 1 2 3 545 -1 ... -1 -1 -1 -1 -1</div><input id='attrs-64b136f3-96ff-472e-a318-988fff0ab761' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-64b136f3-96ff-472e-a318-988fff0ab761' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-3b1490cb-f2df-4709-9051-59f2a6913ed6' class='xr-var-data-in' type='checkbox'><label for='data-3b1490cb-f2df-4709-9051-59f2a6913ed6' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>cf_role :</span></dt><dd>face_node_connectivity</dd><dt><span>long_name :</span></dt><dd>Vertex nodes of mesh faces (counterclockwise)</dd><dt><span>start_index :</span></dt><dd>0</dd><dt><span>_FillValue :</span></dt><dd>-1</dd></dl></div><div class='xr-var-data'><pre>array([[  0,   1,   2, ...,  -1,  -1,  -1],\n",
       "       [  3,   2,   4, ...,  -1,  -1,  -1],\n",
       "       [  6,   5,   7, ...,  -1,  -1,  -1],\n",
       "       ...,\n",
       "       [546,  43,  -1, ...,  -1,  -1,  -1],\n",
       "       [547, 418,  -1, ...,  -1,  -1,  -1],\n",
       "       [548, 519,  -1, ...,  -1,  -1,  -1]])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>edge_nodes</span></div><div class='xr-var-dims'>(nedge, 2)</div><div class='xr-var-dtype'>int32</div><div class='xr-var-preview xr-preview'>0 1 1 2 2 3 ... 43 547 418 548 519</div><input id='attrs-870f2ac2-6753-4d95-9091-fa8f0836f8e6' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-870f2ac2-6753-4d95-9091-fa8f0836f8e6' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-44bd637f-d46f-44fb-abd1-666fc094d3ad' class='xr-var-data-in' type='checkbox'><label for='data-44bd637f-d46f-44fb-abd1-666fc094d3ad' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>cf_role :</span></dt><dd>edge_node_connectivity</dd><dt><span>long_name :</span></dt><dd>Vertex nodes of mesh edges</dd><dt><span>start_index :</span></dt><dd>0</dd></dl></div><div class='xr-var-data'><pre>array([[  0,   1],\n",
       "       [  1,   2],\n",
       "       [  2,   3],\n",
       "       ...,\n",
       "       [546,  43],\n",
       "       [547, 418],\n",
       "       [548, 519]])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>edge_face_connectivity</span></div><div class='xr-var-dims'>(nedge, 2)</div><div class='xr-var-dtype'>int32</div><div class='xr-var-preview xr-preview'>0 207 0 208 0 ... 194 442 329 443</div><input id='attrs-432e6101-b416-49ae-a585-8dedb2aafeed' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-432e6101-b416-49ae-a585-8dedb2aafeed' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-89855cac-e6e3-4a24-988e-64508e050e40' class='xr-var-data-in' type='checkbox'><label for='data-89855cac-e6e3-4a24-988e-64508e050e40' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>cf_role :</span></dt><dd>edge_face_connectivity</dd><dt><span>long_name :</span></dt><dd>neighbor faces for edges</dd><dt><span>start_index :</span></dt><dd>0</dd></dl></div><div class='xr-var-data'><pre>array([[  0, 207],\n",
       "       [  0, 208],\n",
       "       [  0,   1],\n",
       "       ...,\n",
       "       [ 19, 441],\n",
       "       [194, 442],\n",
       "       [329, 443]])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>edges_face1</span></div><div class='xr-var-dims'>(nedge)</div><div class='xr-var-dtype'>int32</div><div class='xr-var-preview xr-preview'>0 0 0 0 207 ... 366 0 19 194 329</div><input id='attrs-706f4c68-1643-415f-ba77-d78d8fd746eb' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-706f4c68-1643-415f-ba77-d78d8fd746eb' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-71f34899-8299-4107-9895-c214dd49ee36' class='xr-var-data-in' type='checkbox'><label for='data-71f34899-8299-4107-9895-c214dd49ee36' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>Units :</span></dt><dd></dd></dl></div><div class='xr-var-data'><pre>array([  0,   0,   0,   0, 207, 207, 207, 208, 208, 208,  30,  30,  30,\n",
       "        30,  29,  29,  29,  29,  29,  38,  38,  38,  38,   4,   4,   4,\n",
       "         4,   5,   5,   5, 254, 254, 254, 254, 254, 253, 253, 253, 253,\n",
       "       316, 316, 316, 316, 217, 217, 217, 217, 216, 216, 216, 278, 278,\n",
       "       278, 278,  19,  19,  19, 212, 212, 212, 213, 213, 213,   1,   1,\n",
       "         1,   3,   3,   3,   3,   2,   2,   2, 209, 209, 210, 210,   6,\n",
       "         6, 211,   7,   7,   7,   8,   8,   8,   9,   9,  10,  10,  11,\n",
       "        11,  11,  11, 275, 275, 275, 275, 275,  37,  37,  37,  37, 276,\n",
       "       276, 276,  12,  12,  12,  13,  13,  13,  14,  14,  14,  20,  20,\n",
       "        20,  21,  21,  21,  15,  15,  15,  22,  22,  22,  16,  16,  16,\n",
       "        17,  17,  17,  23,  23,  23,  23,  18,  18,  24,  24,  25, 214,\n",
       "        44,  44,  44,  44,  45,  45,  45,  45,  45,  26,  60,  60,  60,\n",
       "        60,  60,  61,  61,  61,  61,  61, 283, 283, 283,  27,  27,  31,\n",
       "        31,  28,  28, 223, 223, 223,  39,  39,  81,  81,  81,  81,  72,\n",
       "        72,  72,  72, 227, 227, 227,  33,  33,  33,  33,  32,  32,  32,\n",
       "        32,  43,  43,  43,  43,  43,  41,  41,  41,  41,  41,  42, 277,\n",
       "       220, 220, 220,  75,  75,  75,  75,  75,  75, 241, 241, 241, 241,\n",
       "       242, 242,  51,  51,  51,  92,  92,  92,  92,  91,  91,  91,  91,\n",
       "        91,  99,  99,  99,  99, 268, 268, 268,  40,  40,  53,  53,  53,\n",
       "        34,  34,  34,  34,  52,  52, 303, 303, 303, 304, 304,  54,  54,\n",
       "...\n",
       "       364, 364, 364, 155, 155, 155, 154, 154, 170, 170, 170, 170, 170,\n",
       "       149, 149, 149, 138, 148, 148, 156, 150, 150, 151, 151, 152, 152,\n",
       "       153, 259, 259, 259, 356, 356, 363, 363, 363, 146, 146, 146, 146,\n",
       "       160, 160, 160, 161, 329, 329, 329, 168, 168, 168, 167, 167, 181,\n",
       "       181, 181, 181, 164, 164, 164, 163, 163, 171, 171, 165, 165, 166,\n",
       "       169, 362, 362, 362, 362, 343, 343, 343, 344, 344, 183, 183, 183,\n",
       "       183, 183, 191, 191, 191, 192, 192, 192, 174, 174, 174, 174, 175,\n",
       "       175, 175, 261, 261, 261, 260, 322, 322, 322, 322, 173, 173, 173,\n",
       "       179, 179, 179, 178, 178, 188, 188, 188, 188, 177, 177, 176, 176,\n",
       "       182, 182, 182, 345, 345, 346, 346, 180, 172, 172, 172, 172, 159,\n",
       "       262, 262, 184, 184, 184, 184, 265, 265, 265, 193, 193, 193, 193,\n",
       "       204, 204, 204, 324, 324, 325, 325, 325, 186, 186, 186, 185, 185,\n",
       "       195, 195, 195, 197, 197, 197, 338, 338, 187, 198, 198, 198, 198,\n",
       "       198, 199, 199, 199, 199, 351, 351, 351, 339, 339, 339, 353, 353,\n",
       "       353, 353, 263, 196, 194, 189, 189, 189, 200, 200, 190, 190, 342,\n",
       "       342, 205, 205, 205, 201, 201, 202, 202, 264, 203, 341, 341, 348,\n",
       "       348, 348, 326, 326, 327, 327, 327, 266, 266, 328, 206, 270, 270,\n",
       "       271, 273, 273, 273,  35, 218, 279, 289, 290, 292, 298, 299, 315,\n",
       "       313, 257, 257, 319, 320, 321, 347, 355, 355, 267, 350, 349, 365,\n",
       "       366,   0,  19, 194, 329])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>edges_face2</span></div><div class='xr-var-dims'>(nedge)</div><div class='xr-var-dtype'>int32</div><div class='xr-var-preview xr-preview'>207 208 1 367 ... 440 441 442 443</div><input id='attrs-03122354-fe35-401d-8e16-80c72cb3a721' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-03122354-fe35-401d-8e16-80c72cb3a721' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-7b2e7feb-d6fc-4a9b-9027-e75bf104f1d1' class='xr-var-data-in' type='checkbox'><label for='data-7b2e7feb-d6fc-4a9b-9027-e75bf104f1d1' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>Units :</span></dt><dd></dd></dl></div><div class='xr-var-data'><pre>array([207, 208,   1, 367, 208, 368, 268, 269, 209,   1,  29,  38,  31,\n",
       "        26,  38,  25,  28, 223, 224, 224, 225,  51,  39,   5, 369,   3,\n",
       "       211, 212,   6, 370, 253, 316, 255, 335, 334, 334,  90, 252, 315,\n",
       "       315, 131, 132, 317, 216, 278, 218,  10,   9, 215, 277, 277,  46,\n",
       "        47, 279,  18,  27, 371, 213, 211, 273, 274, 214,   6, 209,   2,\n",
       "       372, 373,   2, 210, 211, 209, 210, 374, 270, 210, 271, 211,   7,\n",
       "       375, 272, 214,   8, 376, 215,   9, 377,  10, 378,  11, 379, 218,\n",
       "        20,  12, 380,  37, 276, 214, 274,  36, 276,  36,  44,  45,  45,\n",
       "       277, 215,  20,  13, 381,  21,  14, 382,  22,  15, 383,  21, 218,\n",
       "       219, 219, 220,  22,  23,  16, 384, 220, 221,  23,  24,  17, 385,\n",
       "        25,  18, 386, 221, 222,  28,  24,  26, 387,  28,  25,  26, 215,\n",
       "        45,  36, 302, 301, 301, 300,  55,  46, 277,  27,  61, 283,  50,\n",
       "        59,  69, 283,  70,  71, 285, 284, 284, 222, 282,  31, 388,  39,\n",
       "       389, 222, 223, 222, 284, 224,  51, 390,  72, 227,  87, 391, 227,\n",
       "       392,  62, 226, 226, 288, 228,  32,  43,  34, 271, 270, 269,  41,\n",
       "        42,  42,  54, 304, 303,  34,  42, 269, 268,  40,  53,  54,  46,\n",
       "       219, 281, 221, 241, 242, 243,  74,  84,  76, 242,  76, 240, 302,\n",
       "       303, 243, 225,  62, 393,  91,  99, 394,  87,  87, 228, 229,  97,\n",
       "        98,  98, 110, 361, 395, 396,  40, 269, 397,  52,  52,  64,  54,\n",
       "       303,  35, 273, 272, 398,  63, 304, 302,  35, 305, 243,  64, 306,\n",
       "...\n",
       "       160, 146, 365, 154, 170, 156, 153, 169, 169, 182, 342, 343, 171,\n",
       "       148, 164, 150, 152, 413, 163, 171, 165, 151, 166, 152, 167, 153,\n",
       "       168, 356, 321, 260, 260, 362, 362, 159, 160, 160, 161, 366, 365,\n",
       "       161, 159, 173, 174, 267, 328, 414, 167, 181, 169, 166, 180, 180,\n",
       "       339, 340, 182, 163, 177, 165, 415, 176, 343, 344, 178, 166, 179,\n",
       "       182, 260, 261, 262, 159, 344, 342, 351, 352, 345, 191, 184, 355,\n",
       "       354, 190, 192, 190, 202, 203, 193, 184, 173, 265, 266, 175, 266,\n",
       "       267, 416, 260, 323, 262, 322, 321, 347, 355, 323, 172, 264, 265,\n",
       "       178, 188, 180, 177, 187, 187, 197, 338, 180, 176, 186, 417, 185,\n",
       "       340, 341, 342, 346, 353, 354, 347, 339, 159, 262, 263, 264, 262,\n",
       "       324, 263, 193, 324, 323, 355, 264, 327, 266, 204, 205, 325, 324,\n",
       "       203, 418, 205, 325, 323, 205, 326, 263, 185, 195, 187, 419, 194,\n",
       "       194, 420, 196, 338, 196, 421, 422, 339, 196, 199, 351, 350, 349,\n",
       "       423, 351, 424, 200, 189, 189, 352, 350, 425, 348, 340, 352, 189,\n",
       "       190, 354, 264, 426, 427, 200, 190, 352, 428, 201, 201, 354, 341,\n",
       "       350, 429, 206, 326, 202, 430, 431, 203, 326, 432, 340, 349, 433,\n",
       "       349, 340, 327, 206, 206, 434, 328, 328, 267, 435, 436, 269, 271,\n",
       "       272, 272,  35, 274, 274, 279, 280, 290, 291, 291, 299, 300, 314,\n",
       "       314, 256, 319, 320, 321, 347, 355, 323, 354, 437, 349, 438, 366,\n",
       "       439, 440, 441, 442, 443])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>faces_surface_area</span></div><div class='xr-var-dims'>(nface)</div><div class='xr-var-dtype'>float32</div><div class='xr-var-preview xr-preview'>1.209e+04 1.155e+04 ... 0.0 0.0</div><input id='attrs-3e2f99ae-2916-4ec3-9be8-801c7d28b773' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-3e2f99ae-2916-4ec3-9be8-801c7d28b773' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-078c8969-6145-4054-a3df-d69706fe87e1' class='xr-var-data-in' type='checkbox'><label for='data-078c8969-6145-4054-a3df-d69706fe87e1' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>Can Plot :</span></dt><dd>False</dd><dt><span>Column :</span></dt><dd>[&#x27;Surface Area&#x27;]</dd><dt><span>Row :</span></dt><dd>Cell</dd></dl></div><div class='xr-var-data'><pre>array([12093.502 , 11548.585 , 11171.599 , 10933.172 , 10845.208 ,\n",
       "       11057.737 , 11076.327 , 11159.808 , 11355.937 , 11707.954 ,\n",
       "       12179.411 , 12372.714 , 10000.    , 10000.    , 10000.    ,\n",
       "       10000.    , 10000.    , 10000.    , 10000.    , 10000.    ,\n",
       "       10192.167 , 10157.063 , 11570.182 , 12511.738 , 10000.    ,\n",
       "       10000.    , 10000.    , 10000.    , 11643.33  , 12375.317 ,\n",
       "       10000.    , 10000.    , 10225.055 ,  9011.354 , 11800.216 ,\n",
       "       11948.948 , 11381.768 , 10379.308 , 13925.537 , 10000.    ,\n",
       "       12904.911 , 12812.023 , 10000.    , 12647.637 , 11685.764 ,\n",
       "       15638.24  , 13152.936 , 12571.16  , 11801.007 , 10739.222 ,\n",
       "       10746.115 , 12266.823 , 10000.    , 10000.    , 10505.016 ,\n",
       "       14465.06  , 10000.    , 10000.    , 10000.    , 10000.    ,\n",
       "       12278.9795, 12606.872 , 11669.523 , 10000.    , 10422.424 ,\n",
       "       13378.265 , 12460.002 , 10000.    , 10000.    , 10000.    ,\n",
       "       10000.    , 11893.997 , 10883.659 , 11015.559 , 11371.164 ,\n",
       "       12317.797 , 12140.093 , 11477.414 , 10786.679 , 11399.253 ,\n",
       "       12984.431 , 11392.88  , 11576.466 , 11528.987 , 11435.215 ,\n",
       "       12482.378 , 12737.938 , 12552.909 , 11622.415 , 11061.124 ,\n",
       "       14263.398 , 13467.075 , 10000.    , 10000.    , 13848.663 ,\n",
       "       12374.09  , 11786.802 , 11719.413 , 10000.    , 12591.233 ,\n",
       "...\n",
       "        9677.272 ,  9377.417 , 11661.28  , 13107.175 , 12163.041 ,\n",
       "        9246.305 , 11232.672 ,  9340.985 , 10520.21  , 10267.455 ,\n",
       "       11053.815 , 10812.306 , 10158.613 ,  8401.925 , 10414.027 ,\n",
       "        9197.689 , 15348.971 , 11569.981 ,  9116.009 , 10310.002 ,\n",
       "        8289.561 , 14907.459 ,     0.    ,     0.    ,     0.    ,\n",
       "           0.    ,     0.    ,     0.    ,     0.    ,     0.    ,\n",
       "           0.    ,     0.    ,     0.    ,     0.    ,     0.    ,\n",
       "           0.    ,     0.    ,     0.    ,     0.    ,     0.    ,\n",
       "           0.    ,     0.    ,     0.    ,     0.    ,     0.    ,\n",
       "           0.    ,     0.    ,     0.    ,     0.    ,     0.    ,\n",
       "           0.    ,     0.    ,     0.    ,     0.    ,     0.    ,\n",
       "           0.    ,     0.    ,     0.    ,     0.    ,     0.    ,\n",
       "           0.    ,     0.    ,     0.    ,     0.    ,     0.    ,\n",
       "           0.    ,     0.    ,     0.    ,     0.    ,     0.    ,\n",
       "           0.    ,     0.    ,     0.    ,     0.    ,     0.    ,\n",
       "           0.    ,     0.    ,     0.    ,     0.    ,     0.    ,\n",
       "           0.    ,     0.    ,     0.    ,     0.    ,     0.    ,\n",
       "           0.    ,     0.    ,     0.    ,     0.    ,     0.    ,\n",
       "           0.    ,     0.    ,     0.    ,     0.    ,     0.    ,\n",
       "           0.    ,     0.    ,     0.    ,     0.    ], dtype=float32)</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>edge_velocity</span></div><div class='xr-var-dims'>(time, nedge)</div><div class='xr-var-dtype'>float32</div><div class='xr-var-preview xr-preview'>0.0 0.0 0.0 0.0 ... 0.0 0.0 0.5211</div><input id='attrs-39a98bad-1c84-43ed-b327-1071242ff6c0' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-39a98bad-1c84-43ed-b327-1071242ff6c0' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-009d3145-0cdf-42e7-bc68-5e1046fd38b2' class='xr-var-data-in' type='checkbox'><label for='data-009d3145-0cdf-42e7-bc68-5e1046fd38b2' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>Can Interpolate :</span></dt><dd>True</dd><dt><span>Can Plot :</span></dt><dd>True</dd><dt><span>Columns :</span></dt><dd>Faces</dd><dt><span>Coverage :</span></dt><dd>Wet</dd><dt><span>Location :</span></dt><dd>Faces</dd><dt><span>Maximum Value of Data Set :</span></dt><dd>nan</dd><dt><span>Name :</span></dt><dd>Velocity</dd><dt><span>Orientation :</span></dt><dd>Normal</dd><dt><span>Rows :</span></dt><dd>Times</dd><dt><span>Units :</span></dt><dd>m/s</dd></dl></div><div class='xr-var-data'><pre>array([[0.        , 0.        , 0.        , ..., 0.        , 0.        ,\n",
       "        0.40475154],\n",
       "       [0.        , 0.        , 0.        , ..., 0.        , 0.        ,\n",
       "        0.4050219 ],\n",
       "       [0.        , 0.        , 0.        , ..., 0.        , 0.        ,\n",
       "        0.4052916 ],\n",
       "       ...,\n",
       "       [0.        , 0.        , 0.        , ..., 0.        , 0.        ,\n",
       "        0.5210552 ],\n",
       "       [0.        , 0.        , 0.        , ..., 0.        , 0.        ,\n",
       "        0.52105576],\n",
       "       [0.        , 0.        , 0.        , ..., 0.        , 0.        ,\n",
       "        0.52105606]], dtype=float32)</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>edge_length</span></div><div class='xr-var-dims'>(nedge)</div><div class='xr-var-dtype'>float32</div><div class='xr-var-preview xr-preview'>85.89 17.44 113.5 ... 100.0 128.8</div><input id='attrs-7bdb6448-27cd-4ad1-bf75-9fe842430425' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-7bdb6448-27cd-4ad1-bf75-9fe842430425' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-4a39b9ee-dfc5-4ea2-84b7-5b399b0bee6d' class='xr-var-data-in' type='checkbox'><label for='data-4a39b9ee-dfc5-4ea2-84b7-5b399b0bee6d' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>Units :</span></dt><dd>ft</dd></dl></div><div class='xr-var-data'><pre>array([ 85.89211 ,  17.439554, 113.48682 , 100.      , 113.06435 ,\n",
       "       130.11964 ,  99.31437 ,  99.31749 , 109.39354 ,  88.81981 ,\n",
       "       100.      , 100.      , 100.      , 100.      ,  47.654926,\n",
       "       100.      , 108.437805,  24.934294,  50.220978,  93.907425,\n",
       "        58.96602 ,  50.471256, 100.      , 110.694496, 100.      ,\n",
       "       106.20966 , 100.10052 , 100.000275, 110.460236, 100.      ,\n",
       "        51.840977,  99.29926 ,  57.092033,  62.797802,  65.7461  ,\n",
       "        91.43993 ,  46.153507, 101.7107  ,  99.314575, 121.785515,\n",
       "        56.962395,  45.561947, 101.98182 , 120.9206  ,  99.31481 ,\n",
       "       127.53077 , 100.1376  , 100.08738 , 115.67217 ,  99.3232  ,\n",
       "       125.6258  ,  25.746962,  73.28819 , 119.10959 , 100.      ,\n",
       "       100.      , 100.      , 106.35971 , 105.50783 ,  99.32356 ,\n",
       "        99.31784 , 107.15623 , 100.00184 ,  14.152593, 109.41352 ,\n",
       "       100.      , 100.      , 107.216225,  93.56978 ,   8.411393,\n",
       "        91.33729 ,  11.232904, 100.      ,  99.315   , 106.179   ,\n",
       "        99.31781 , 105.758255, 111.066315, 100.      ,  99.32246 ,\n",
       "       100.00565 , 112.12984 , 100.      , 100.04086 , 114.988884,\n",
       "       100.      , 119.17019 , 100.      , 124.41802 , 100.      ,\n",
       "        69.78516 ,  43.103107, 100.      , 100.      ,  88.287224,\n",
       "        82.55536 ,  99.30882 ,  87.09727 ,  13.797156,  75.98283 ,\n",
       "...\n",
       "       100.      , 100.      , 100.73506 , 100.      ,  97.64508 ,\n",
       "       116.70721 , 172.67032 , 100.      , 105.26687 ,  16.351381,\n",
       "        96.13597 ,  85.58452 , 136.98862 ,  74.40756 , 100.      ,\n",
       "       100.      ,  42.041985,  17.8536  , 109.39284 , 102.350555,\n",
       "        39.445755,  83.03847 , 108.884384,  86.23403 ,  51.86689 ,\n",
       "        55.69457 , 112.298965,  88.05103 , 100.      , 100.      ,\n",
       "       100.      ,  98.142006,  98.26594 , 100.      , 100.      ,\n",
       "       100.      ,  27.054056,  92.423836,  95.497986, 100.      ,\n",
       "        96.17716 ,  43.140568, 100.      , 100.      , 100.      ,\n",
       "       100.      ,  99.21852 , 100.      ,  83.33201 ,  95.497986,\n",
       "       173.11029 , 133.3166  ,  95.497986,  77.49693 ,  81.49823 ,\n",
       "       125.902985,  16.832644, 152.82161 ,  99.262886, 131.5571  ,\n",
       "       116.32402 , 153.72005 ,  84.86046 ,  91.74184 ,  90.69268 ,\n",
       "        89.94224 ,  93.676575,  88.41198 ,   9.854439,  99.29854 ,\n",
       "       110.2637  , 125.302925, 114.64001 , 115.68813 , 128.34367 ,\n",
       "       112.596176,  83.31521 , 102.19095 ,  94.54581 ,  99.17044 ,\n",
       "        90.623886, 111.21425 ,  77.387024,  95.497986,  46.834377,\n",
       "        81.45024 , 137.7868  ,  91.29342 ,  36.103046,  91.270935,\n",
       "        59.904865, 119.09156 , 100.      , 100.      , 128.82701 ],\n",
       "      dtype=float32)</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>water_surface_elev</span></div><div class='xr-var-dims'>(time, nface)</div><div class='xr-var-dtype'>float32</div><div class='xr-var-preview xr-preview'>22.24 22.22 22.26 ... 24.0 20.75</div><input id='attrs-e0f1293f-0b0d-40b4-89d5-ed2287be86cb' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-e0f1293f-0b0d-40b4-89d5-ed2287be86cb' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-cf1655d4-4ba1-4d4b-81c3-1eb674f662c7' class='xr-var-data-in' type='checkbox'><label for='data-cf1655d4-4ba1-4d4b-81c3-1eb674f662c7' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>Can Interpolate :</span></dt><dd>True</dd><dt><span>Can Plot :</span></dt><dd>True</dd><dt><span>Columns :</span></dt><dd>Cells</dd><dt><span>Coverage :</span></dt><dd>Wet</dd><dt><span>Location :</span></dt><dd>Cells</dd><dt><span>Maximum Value of Data Set :</span></dt><dd>21.932491</dd><dt><span>Minimum Value of Data Set :</span></dt><dd>20.750002</dd><dt><span>Name :</span></dt><dd>Water Surface</dd><dt><span>Orientation :</span></dt><dd>Scalar</dd><dt><span>Rows :</span></dt><dd>Times</dd><dt><span>Units :</span></dt><dd>m</dd></dl></div><div class='xr-var-data'><pre>array([[22.243147, 22.22242 , 22.258389, ..., 24.      , 24.      ,\n",
       "        20.750002],\n",
       "       [22.243147, 22.22242 , 22.258389, ..., 24.      , 24.      ,\n",
       "        20.750002],\n",
       "       [22.243147, 22.22242 , 22.258389, ..., 24.      , 24.      ,\n",
       "        20.750002],\n",
       "       ...,\n",
       "       [22.243147, 22.22242 , 22.258389, ..., 24.      , 24.      ,\n",
       "        20.750002],\n",
       "       [22.243147, 22.22242 , 22.258389, ..., 24.      , 24.      ,\n",
       "        20.750002],\n",
       "       [22.243147, 22.22242 , 22.258389, ..., 24.      , 24.      ,\n",
       "        20.750002]], dtype=float32)</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>volume</span></div><div class='xr-var-dims'>(time, nface)</div><div class='xr-var-dtype'>float32</div><div class='xr-var-preview xr-preview'>0.0 0.0 0.0 0.0 ... 0.0 0.0 0.5215</div><input id='attrs-b0e4be53-f583-4efe-90af-4a8d63bb5736' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-b0e4be53-f583-4efe-90af-4a8d63bb5736' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-8483915b-f2fb-4130-b8b9-b78e5641f0c6' class='xr-var-data-in' type='checkbox'><label for='data-8483915b-f2fb-4130-b8b9-b78e5641f0c6' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>Can Interpolate :</span></dt><dd>True</dd><dt><span>Can Plot :</span></dt><dd>True</dd><dt><span>Columns :</span></dt><dd>Cells</dd><dt><span>Coverage :</span></dt><dd>Wet</dd><dt><span>Location :</span></dt><dd>Cells</dd><dt><span>Maximum Value of Data Set :</span></dt><dd>16477.807</dd><dt><span>Name :</span></dt><dd>Volume</dd><dt><span>Orientation :</span></dt><dd>Scalar</dd><dt><span>Rows :</span></dt><dd>Times</dd><dt><span>Units :</span></dt><dd>ft^3</dd></dl></div><div class='xr-var-data'><pre>array([[0.        , 0.        , 0.        , ..., 0.        , 0.        ,\n",
       "        0.5403911 ],\n",
       "       [0.        , 0.        , 0.        , ..., 0.        , 0.        ,\n",
       "        0.54035497],\n",
       "       [0.        , 0.        , 0.        , ..., 0.        , 0.        ,\n",
       "        0.54031897],\n",
       "       ...,\n",
       "       [0.        , 0.        , 0.        , ..., 0.        , 0.        ,\n",
       "        0.5214786 ],\n",
       "       [0.        , 0.        , 0.        , ..., 0.        , 0.        ,\n",
       "        0.52147853],\n",
       "       [0.        , 0.        , 0.        , ..., 0.        , 0.        ,\n",
       "        0.5214785 ]], dtype=float32)</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>face_flow</span></div><div class='xr-var-dims'>(time, nedge)</div><div class='xr-var-dtype'>float32</div><div class='xr-var-preview xr-preview'>0.0 0.0 0.0 0.0 ... 0.0 0.0 14.48</div><input id='attrs-ac121506-cc9f-4397-b0e4-e5287fafb9e7' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-ac121506-cc9f-4397-b0e4-e5287fafb9e7' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-1da95339-9434-4479-824d-42855f71097f' class='xr-var-data-in' type='checkbox'><label for='data-1da95339-9434-4479-824d-42855f71097f' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>Can Interpolate :</span></dt><dd>True</dd><dt><span>Can Plot :</span></dt><dd>True</dd><dt><span>Columns :</span></dt><dd>Faces</dd><dt><span>Coverage :</span></dt><dd>Wet</dd><dt><span>Location :</span></dt><dd>Faces</dd><dt><span>Maximum Value of Data Set :</span></dt><dd>nan</dd><dt><span>Name :</span></dt><dd>Flow</dd><dt><span>Orientation :</span></dt><dd>Normal</dd><dt><span>Rows :</span></dt><dd>Times</dd><dt><span>Units :</span></dt><dd>m^3/s</dd></dl></div><div class='xr-var-data'><pre>array([[ 0.      ,  0.      ,  0.      , ...,  0.      ,  0.      ,\n",
       "        11.777798],\n",
       "       [ 0.      ,  0.      ,  0.      , ...,  0.      ,  0.      ,\n",
       "        11.784642],\n",
       "       [ 0.      ,  0.      ,  0.      , ...,  0.      ,  0.      ,\n",
       "        11.791467],\n",
       "       ...,\n",
       "       [ 0.      ,  0.      ,  0.      , ...,  0.      ,  0.      ,\n",
       "        14.479188],\n",
       "       [ 0.      ,  0.      ,  0.      , ...,  0.      ,  0.      ,\n",
       "        14.479199],\n",
       "       [ 0.      ,  0.      ,  0.      , ...,  0.      ,  0.      ,\n",
       "        14.479205]], dtype=float32)</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>face_hydraulic_depth</span></div><div class='xr-var-dims'>(time, nface)</div><div class='xr-var-dtype'>float32</div><div class='xr-var-preview xr-preview'>0.0 0.0 0.0 0.0 ... 0.0 0.0 0.5215</div><input id='attrs-39f4edd1-a50a-4fb8-9157-6c36ef63484a' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-39f4edd1-a50a-4fb8-9157-6c36ef63484a' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-023ddba5-9861-4989-aea7-c43c2785b2d0' class='xr-var-data-in' type='checkbox'><label for='data-023ddba5-9861-4989-aea7-c43c2785b2d0' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>Can Interpolate :</span></dt><dd>True</dd><dt><span>Can Plot :</span></dt><dd>True</dd><dt><span>Columns :</span></dt><dd>Cells</dd><dt><span>Coverage :</span></dt><dd>Wet</dd><dt><span>Location :</span></dt><dd>Cells</dd><dt><span>Maximum Value of Data Set :</span></dt><dd>1.5877392</dd><dt><span>Name :</span></dt><dd>Hydraulic Depth</dd><dt><span>Orientation :</span></dt><dd>Scalar</dd><dt><span>Rows :</span></dt><dd>Times</dd><dt><span>Units :</span></dt><dd>m</dd></dl></div><div class='xr-var-data'><pre>array([[0.        , 0.        , 0.        , ..., 0.        , 0.        ,\n",
       "        0.5403911 ],\n",
       "       [0.        , 0.        , 0.        , ..., 0.        , 0.        ,\n",
       "        0.54035497],\n",
       "       [0.        , 0.        , 0.        , ..., 0.        , 0.        ,\n",
       "        0.54031897],\n",
       "       ...,\n",
       "       [0.        , 0.        , 0.        , ..., 0.        , 0.        ,\n",
       "        0.5214786 ],\n",
       "       [0.        , 0.        , 0.        , ..., 0.        , 0.        ,\n",
       "        0.52147853],\n",
       "       [0.        , 0.        , 0.        , ..., 0.        , 0.        ,\n",
       "        0.5214785 ]], dtype=float32)</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>face_velocity_x</span></div><div class='xr-var-dims'>(time, nface)</div><div class='xr-var-dtype'>float32</div><div class='xr-var-preview xr-preview'>0.0 0.0 0.0 0.0 ... 0.0 0.0 0.0 0.0</div><input id='attrs-7164f372-9d01-4ede-bba3-c3e7d1d25e52' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-7164f372-9d01-4ede-bba3-c3e7d1d25e52' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-8af483fc-e871-4b27-bc8e-1530736b3d2e' class='xr-var-data-in' type='checkbox'><label for='data-8af483fc-e871-4b27-bc8e-1530736b3d2e' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>Can Interpolate :</span></dt><dd>True</dd><dt><span>Can Plot :</span></dt><dd>True</dd><dt><span>Columns :</span></dt><dd>Cells</dd><dt><span>Coverage :</span></dt><dd>Wet</dd><dt><span>Group :</span></dt><dd>Cell Velocity</dd><dt><span>Index :</span></dt><dd>1</dd><dt><span>Location :</span></dt><dd>Cells</dd><dt><span>Maximum Value of Data Set :</span></dt><dd>nan</dd><dt><span>Name :</span></dt><dd>Velocity X</dd><dt><span>Orientation :</span></dt><dd>Scalar</dd><dt><span>Rows :</span></dt><dd>Times</dd><dt><span>Units :</span></dt><dd>m/s</dd></dl></div><div class='xr-var-data'><pre>array([[0., 0., 0., ..., 0., 0., 0.],\n",
       "       [0., 0., 0., ..., 0., 0., 0.],\n",
       "       [0., 0., 0., ..., 0., 0., 0.],\n",
       "       ...,\n",
       "       [0., 0., 0., ..., 0., 0., 0.],\n",
       "       [0., 0., 0., ..., 0., 0., 0.],\n",
       "       [0., 0., 0., ..., 0., 0., 0.]], dtype=float32)</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>face_velocity_y</span></div><div class='xr-var-dims'>(time, nface)</div><div class='xr-var-dtype'>float32</div><div class='xr-var-preview xr-preview'>0.0 0.0 0.0 0.0 ... 0.0 0.0 0.0 0.0</div><input id='attrs-4055baa7-fa74-415c-bc17-eb605fc09a69' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-4055baa7-fa74-415c-bc17-eb605fc09a69' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-2ae66e6e-51e2-4396-a6b5-f5d1e9bd33cc' class='xr-var-data-in' type='checkbox'><label for='data-2ae66e6e-51e2-4396-a6b5-f5d1e9bd33cc' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>Can Interpolate :</span></dt><dd>True</dd><dt><span>Can Plot :</span></dt><dd>True</dd><dt><span>Columns :</span></dt><dd>Cells</dd><dt><span>Coverage :</span></dt><dd>Wet</dd><dt><span>Group :</span></dt><dd>Cell Velocity</dd><dt><span>Index :</span></dt><dd>2</dd><dt><span>Location :</span></dt><dd>Cells</dd><dt><span>Maximum Value of Data Set :</span></dt><dd>nan</dd><dt><span>Name :</span></dt><dd>Velocity Y</dd><dt><span>Orientation :</span></dt><dd>Scalar</dd><dt><span>Rows :</span></dt><dd>Times</dd><dt><span>Units :</span></dt><dd>m/s</dd></dl></div><div class='xr-var-data'><pre>array([[0., 0., 0., ..., 0., 0., 0.],\n",
       "       [0., 0., 0., ..., 0., 0., 0.],\n",
       "       [0., 0., 0., ..., 0., 0., 0.],\n",
       "       ...,\n",
       "       [0., 0., 0., ..., 0., 0., 0.],\n",
       "       [0., 0., 0., ..., 0., 0., 0.],\n",
       "       [0., 0., 0., ..., 0., 0., 0.]], dtype=float32)</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>face_velocity_magnitude</span></div><div class='xr-var-dims'>(time, nface)</div><div class='xr-var-dtype'>float32</div><div class='xr-var-preview xr-preview'>0.0 0.0 0.0 0.0 ... 0.0 0.0 0.0 0.0</div><input id='attrs-a206baaf-b6f8-40eb-9210-678c33a70d55' class='xr-var-attrs-in' type='checkbox' disabled><label for='attrs-a206baaf-b6f8-40eb-9210-678c33a70d55' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-fae72c95-a21a-46d5-a485-8cf82f0775b5' class='xr-var-data-in' type='checkbox'><label for='data-fae72c95-a21a-46d5-a485-8cf82f0775b5' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'></dl></div><div class='xr-var-data'><pre>array([[0., 0., 0., ..., 0., 0., 0.],\n",
       "       [0., 0., 0., ..., 0., 0., 0.],\n",
       "       [0., 0., 0., ..., 0., 0., 0.],\n",
       "       ...,\n",
       "       [0., 0., 0., ..., 0., 0., 0.],\n",
       "       [0., 0., 0., ..., 0., 0., 0.],\n",
       "       [0., 0., 0., ..., 0., 0., 0.]], dtype=float32)</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>advection_coeff</span></div><div class='xr-var-dims'>(time, nedge)</div><div class='xr-var-dtype'>float32</div><div class='xr-var-preview xr-preview'>0.0 0.0 0.0 0.0 ... 0.0 0.0 14.48</div><input id='attrs-ede43386-d23e-4b01-b396-6eb0ceb0e069' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-ede43386-d23e-4b01-b396-6eb0ceb0e069' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-82b7d256-225c-424d-b003-15e941ad852a' class='xr-var-data-in' type='checkbox'><label for='data-82b7d256-225c-424d-b003-15e941ad852a' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>Units :</span></dt><dd>m3/s</dd></dl></div><div class='xr-var-data'><pre>array([[ 0.      ,  0.      ,  0.      , ...,  0.      ,  0.      ,\n",
       "        11.777798],\n",
       "       [ 0.      ,  0.      ,  0.      , ...,  0.      ,  0.      ,\n",
       "        11.784642],\n",
       "       [ 0.      ,  0.      ,  0.      , ...,  0.      ,  0.      ,\n",
       "        11.791467],\n",
       "       ...,\n",
       "       [ 0.      ,  0.      ,  0.      , ...,  0.      ,  0.      ,\n",
       "        14.479188],\n",
       "       [ 0.      ,  0.      ,  0.      , ...,  0.      ,  0.      ,\n",
       "        14.479199],\n",
       "       [ 0.      ,  0.      ,  0.      , ...,  0.      ,  0.      ,\n",
       "        14.479205]], dtype=float32)</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>edge_vertical_area</span></div><div class='xr-var-dims'>(time, nedge)</div><div class='xr-var-dtype'>float32</div><div class='xr-var-preview xr-preview'>0.0 0.0 0.0 0.0 ... 0.0 0.0 27.79</div><input id='attrs-5bcf4d59-4f58-4d17-8960-1a9cf57dd008' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-5bcf4d59-4f58-4d17-8960-1a9cf57dd008' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-54f59f92-3bbf-4a0f-afdf-e3fba4fd025e' class='xr-var-data-in' type='checkbox'><label for='data-54f59f92-3bbf-4a0f-afdf-e3fba4fd025e' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>Units :</span></dt><dd>m2</dd></dl></div><div class='xr-var-data'><pre>array([[ 0.      ,  0.      ,  0.      , ...,  0.      ,  0.      ,\n",
       "        29.098833],\n",
       "       [ 0.      ,  0.      ,  0.      , ...,  0.      ,  0.      ,\n",
       "        29.096308],\n",
       "       [ 0.      ,  0.      ,  0.      , ...,  0.      ,  0.      ,\n",
       "        29.093786],\n",
       "       ...,\n",
       "       [ 0.      ,  0.      ,  0.      , ...,  0.      ,  0.      ,\n",
       "        27.788202],\n",
       "       [ 0.      ,  0.      ,  0.      , ...,  0.      ,  0.      ,\n",
       "        27.788197],\n",
       "       [ 0.      ,  0.      ,  0.      , ...,  0.      ,  0.      ,\n",
       "        27.78819 ]], dtype=float32)</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>face_to_face_dist</span></div><div class='xr-var-dims'>(nedge)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>143.2 161.4 100.0 ... 50.0 55.01</div><input id='attrs-a62273ff-2455-45d4-a4c9-c4bdf493bdb6' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-a62273ff-2455-45d4-a4c9-c4bdf493bdb6' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-8111bb78-11c3-4cbb-88bc-e2a6820d9f8d' class='xr-var-data-in' type='checkbox'><label for='data-8111bb78-11c3-4cbb-88bc-e2a6820d9f8d' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>Units :</span></dt><dd>m</dd></dl></div><div class='xr-var-data'><pre>array([143.21540974, 161.42024958, 100.        ,  50.        ,\n",
       "       101.49697922,  43.43809912, 100.        , 100.        ,\n",
       "       100.42040736, 131.83277573, 100.        , 100.        ,\n",
       "       100.        , 100.        , 141.42135624, 100.        ,\n",
       "       100.        , 152.33126379, 161.68127564, 135.34648695,\n",
       "       154.58009105, 141.42135624, 100.        , 100.        ,\n",
       "        50.        , 100.        , 116.78676788, 116.48627536,\n",
       "       100.        ,  50.        , 100.97619201, 100.        ,\n",
       "       102.04391921,  71.19936701,  67.1136868 ,  79.090229  ,\n",
       "       136.71038729, 100.45425643, 100.        ,  97.61372313,\n",
       "       152.36809034, 138.49336843,  96.45721828, 100.53690985,\n",
       "       100.        , 101.2655537 , 146.02827476, 135.33645481,\n",
       "       100.27430882, 100.        ,  98.09911107, 176.12547534,\n",
       "       155.54294689,  97.30311011, 100.        , 100.        ,\n",
       "        49.99999999,  99.71616096, 100.19919835, 100.        ,\n",
       "       100.        , 101.06460223, 117.47669781, 155.0912824 ,\n",
       "       100.        ,  50.        ,  50.        , 100.        ,\n",
       "       118.90372266, 150.30855572, 123.91608102, 151.80937842,\n",
       "        50.        , 100.        , 101.1713926 , 100.        ,\n",
       "       100.24978554, 100.        ,  50.        , 100.        ,\n",
       "...\n",
       "       141.42135624, 148.1203963 ,  95.49798263,  95.49798263,\n",
       "       103.16115718, 138.27459884,  95.49798263,  95.49798263,\n",
       "       116.50431365, 135.18059706,  95.49798263,  91.2081525 ,\n",
       "        50.00000004,  50.        , 100.        , 100.        ,\n",
       "        92.93324897,  50.00000004, 100.        , 100.        ,\n",
       "       155.84579725,  95.49798263, 100.        ,  50.00000004,\n",
       "       100.        , 135.6540887 , 100.        ,  50.00000004,\n",
       "        50.00000004, 100.        , 100.        ,  50.00000004,\n",
       "        95.49798263, 100.        ,  54.37549584,  95.49798263,\n",
       "       100.        , 106.00042756, 100.32483763, 112.00682171,\n",
       "       116.33219621, 104.94170053, 100.        ,  94.16001165,\n",
       "        93.65580951,  56.75791385,  98.20041301,  97.42108072,\n",
       "        98.3852236 ,  98.43925773,  83.81304777,  98.93043931,\n",
       "       124.64797774, 100.        ,  96.88042599,  79.08844546,\n",
       "        77.95811688,  81.84148604,  87.44076823,  98.16289367,\n",
       "        98.1729813 ,  98.7708855 , 105.69997106, 100.        ,\n",
       "        88.33452989,  87.94799687, 120.56789845, 100.        ,\n",
       "       141.48526132,  95.49798263,  49.62389509,  95.49798263,\n",
       "        96.53218897,  90.82490657, 105.16093569,  50.90306391,\n",
       "        50.        ,  50.00000004,  55.0128063 ])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>coeff_to_diffusion</span></div><div class='xr-var-dims'>(time, nedge)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>0.0 0.0 0.0 0.0 ... 0.0 0.0 0.05051</div><input id='attrs-1fde5119-aee4-4b95-93a3-1e7da73868e1' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-1fde5119-aee4-4b95-93a3-1e7da73868e1' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-0eca7f5c-0120-418d-9419-6b7db5384f86' class='xr-var-data-in' type='checkbox'><label for='data-0eca7f5c-0120-418d-9419-6b7db5384f86' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>Units :</span></dt><dd>m3/s</dd></dl></div><div class='xr-var-data'><pre>array([[0.        , 0.        , 0.        , ..., 0.        , 0.        ,\n",
       "        0.05289465],\n",
       "       [0.        , 0.        , 0.        , ..., 0.        , 0.        ,\n",
       "        0.05289006],\n",
       "       [0.        , 0.        , 0.        , ..., 0.        , 0.        ,\n",
       "        0.05288548],\n",
       "       ...,\n",
       "       [0.        , 0.        , 0.        , ..., 0.        , 0.        ,\n",
       "        0.05051224],\n",
       "       [0.        , 0.        , 0.        , ..., 0.        , 0.        ,\n",
       "        0.05051223],\n",
       "       [0.        , 0.        , 0.        , ..., 0.        , 0.        ,\n",
       "        0.05051222]])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>dt</span></div><div class='xr-var-dims'>(time)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>30.0 30.0 30.0 ... 30.0 30.0 nan</div><input id='attrs-820c5304-a190-401e-bfdd-f7bbbbaa0b52' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-820c5304-a190-401e-bfdd-f7bbbbaa0b52' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-94426c7b-7eb5-4fd0-a056-f0ace2cb290c' class='xr-var-data-in' type='checkbox'><label for='data-94426c7b-7eb5-4fd0-a056-f0ace2cb290c' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>Units :</span></dt><dd>s</dd></dl></div><div class='xr-var-data'><pre>array([30., 30., 30., ..., 30., 30., nan])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>tracer</span></div><div class='xr-var-dims'>(time, nface)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>100.0 100.0 100.0 ... nan nan nan</div><input id='attrs-6297e60e-99a1-42f5-993f-2f1d59884656' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-6297e60e-99a1-42f5-993f-2f1d59884656' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-ad5fa0f9-3099-45de-ab93-0535fcfc239c' class='xr-var-data-in' type='checkbox'><label for='data-ad5fa0f9-3099-45de-ab93-0535fcfc239c' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>Units :</span></dt><dd>mg/L</dd></dl></div><div class='xr-var-data'><pre>array([[100., 100., 100., ...,   0.,   0.,   0.],\n",
       "       [ nan,  nan,  nan, ...,  nan,  nan,  nan],\n",
       "       [ nan,  nan,  nan, ...,  nan,  nan,  nan],\n",
       "       ...,\n",
       "       [ nan,  nan,  nan, ...,  nan,  nan,  nan],\n",
       "       [ nan,  nan,  nan, ...,  nan,  nan,  nan],\n",
       "       [ nan,  nan,  nan, ...,  nan,  nan,  nan]])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>temperature</span></div><div class='xr-var-dims'>(time, nface)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>15.0 15.0 15.0 15.0 ... nan nan nan</div><input id='attrs-36fb62f2-692b-4fec-aba5-edb82830d947' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-36fb62f2-692b-4fec-aba5-edb82830d947' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-39a86985-77c7-436f-a5c1-38cc2acca20d' class='xr-var-data-in' type='checkbox'><label for='data-39a86985-77c7-436f-a5c1-38cc2acca20d' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>Units :</span></dt><dd>degC</dd></dl></div><div class='xr-var-data'><pre>array([[15., 15., 15., ...,  0.,  0.,  0.],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       ...,\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan]])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>Ap</span></div><div class='xr-var-dims'>(time, nface)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>10.0 10.0 10.0 10.0 ... nan nan nan</div><input id='attrs-1a13c89a-2b1b-4c29-8049-75851eddbe39' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-1a13c89a-2b1b-4c29-8049-75851eddbe39' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-e0580482-fd8f-4ecd-9e3f-b457220159a6' class='xr-var-data-in' type='checkbox'><label for='data-e0580482-fd8f-4ecd-9e3f-b457220159a6' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>Units :</span></dt><dd>mg/L</dd></dl></div><div class='xr-var-data'><pre>array([[10., 10., 10., ..., 10., 10., 10.],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       ...,\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan]])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>DOX</span></div><div class='xr-var-dims'>(time, nface)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>8.0 8.0 8.0 8.0 ... nan nan nan nan</div><input id='attrs-922099f0-3224-46ed-99cf-bac76d0ae1c2' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-922099f0-3224-46ed-99cf-bac76d0ae1c2' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-1e7d8625-b877-43eb-89df-80cb2f27cab2' class='xr-var-data-in' type='checkbox'><label for='data-1e7d8625-b877-43eb-89df-80cb2f27cab2' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>Units :</span></dt><dd>mg/L</dd></dl></div><div class='xr-var-data'><pre>array([[ 8.,  8.,  8., ...,  8.,  8.,  8.],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       ...,\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan]])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>NH4</span></div><div class='xr-var-dims'>(time, nface)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>0.01 0.01 0.01 0.01 ... nan nan nan</div><input id='attrs-bb80870a-b691-4abe-9cd1-a41076248c50' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-bb80870a-b691-4abe-9cd1-a41076248c50' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-2e903536-edf6-4399-b4bf-44efa2c6464a' class='xr-var-data-in' type='checkbox'><label for='data-2e903536-edf6-4399-b4bf-44efa2c6464a' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>Units :</span></dt><dd>mg/L</dd></dl></div><div class='xr-var-data'><pre>array([[0.01, 0.01, 0.01, ..., 0.01, 0.01, 0.01],\n",
       "       [ nan,  nan,  nan, ...,  nan,  nan,  nan],\n",
       "       [ nan,  nan,  nan, ...,  nan,  nan,  nan],\n",
       "       ...,\n",
       "       [ nan,  nan,  nan, ...,  nan,  nan,  nan],\n",
       "       [ nan,  nan,  nan, ...,  nan,  nan,  nan],\n",
       "       [ nan,  nan,  nan, ...,  nan,  nan,  nan]])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>NO3</span></div><div class='xr-var-dims'>(time, nface)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>0.5 0.5 0.5 0.5 ... nan nan nan nan</div><input id='attrs-af8fc2c4-6300-4e5b-9d4a-a1e33d99b1d8' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-af8fc2c4-6300-4e5b-9d4a-a1e33d99b1d8' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-c130b176-6612-42cb-b687-c6da09d37f84' class='xr-var-data-in' type='checkbox'><label for='data-c130b176-6612-42cb-b687-c6da09d37f84' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>Units :</span></dt><dd>mg/L</dd></dl></div><div class='xr-var-data'><pre>array([[0.5, 0.5, 0.5, ..., 0.5, 0.5, 0.5],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       ...,\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan]])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>TIP</span></div><div class='xr-var-dims'>(time, nface)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>0.05 0.05 0.05 0.05 ... nan nan nan</div><input id='attrs-6ccccc52-9a9c-45ac-baac-8164bcda6e5a' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-6ccccc52-9a9c-45ac-baac-8164bcda6e5a' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-bb457612-94ee-482d-b3af-52c43fdded4d' class='xr-var-data-in' type='checkbox'><label for='data-bb457612-94ee-482d-b3af-52c43fdded4d' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>Units :</span></dt><dd>mg/L</dd></dl></div><div class='xr-var-data'><pre>array([[0.05, 0.05, 0.05, ..., 0.05, 0.05, 0.05],\n",
       "       [ nan,  nan,  nan, ...,  nan,  nan,  nan],\n",
       "       [ nan,  nan,  nan, ...,  nan,  nan,  nan],\n",
       "       ...,\n",
       "       [ nan,  nan,  nan, ...,  nan,  nan,  nan],\n",
       "       [ nan,  nan,  nan, ...,  nan,  nan,  nan],\n",
       "       [ nan,  nan,  nan, ...,  nan,  nan,  nan]])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>Ab</span></div><div class='xr-var-dims'>(time, nface)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>24.0 24.0 24.0 24.0 ... nan nan nan</div><input id='attrs-c24a8102-18a1-4c90-bae7-ddc1bed408a0' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-c24a8102-18a1-4c90-bae7-ddc1bed408a0' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-474cf236-2b85-4d93-9495-3d7207145900' class='xr-var-data-in' type='checkbox'><label for='data-474cf236-2b85-4d93-9495-3d7207145900' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>Units :</span></dt><dd>mg/L</dd></dl></div><div class='xr-var-data'><pre>array([[24., 24., 24., ..., 24., 24., 24.],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       ...,\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan]])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>OrgN</span></div><div class='xr-var-dims'>(time, nface)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>1.726 1.726 1.726 ... nan nan nan</div><input id='attrs-e74cc85c-d088-42ed-8d37-4518b375fc2d' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-e74cc85c-d088-42ed-8d37-4518b375fc2d' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-aef2b63b-8df0-431a-8679-e037c8a9ff97' class='xr-var-data-in' type='checkbox'><label for='data-aef2b63b-8df0-431a-8679-e037c8a9ff97' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>Units :</span></dt><dd>mg/L</dd></dl></div><div class='xr-var-data'><pre>array([[1.726, 1.726, 1.726, ..., 1.726, 1.726, 1.726],\n",
       "       [  nan,   nan,   nan, ...,   nan,   nan,   nan],\n",
       "       [  nan,   nan,   nan, ...,   nan,   nan,   nan],\n",
       "       ...,\n",
       "       [  nan,   nan,   nan, ...,   nan,   nan,   nan],\n",
       "       [  nan,   nan,   nan, ...,   nan,   nan,   nan],\n",
       "       [  nan,   nan,   nan, ...,   nan,   nan,   nan]])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>N2</span></div><div class='xr-var-dims'>(time, nface)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>1.0 1.0 1.0 1.0 ... nan nan nan nan</div><input id='attrs-c8fd25b0-a97c-4299-a2f7-9a6b2d2a686d' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-c8fd25b0-a97c-4299-a2f7-9a6b2d2a686d' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-fa0e7796-5152-446c-8e81-487c211e00e9' class='xr-var-data-in' type='checkbox'><label for='data-fa0e7796-5152-446c-8e81-487c211e00e9' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>Units :</span></dt><dd>mg/L</dd></dl></div><div class='xr-var-data'><pre>array([[ 1.,  1.,  1., ...,  1.,  1.,  1.],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       ...,\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan]])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>OrgP</span></div><div class='xr-var-dims'>(time, nface)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>0.24 0.24 0.24 0.24 ... nan nan nan</div><input id='attrs-7feee9d4-720b-4830-9764-35071a41020f' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-7feee9d4-720b-4830-9764-35071a41020f' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-1bc7dbfa-468f-428d-b4fa-a7d6e8ea9229' class='xr-var-data-in' type='checkbox'><label for='data-1bc7dbfa-468f-428d-b4fa-a7d6e8ea9229' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>Units :</span></dt><dd>mg/L</dd></dl></div><div class='xr-var-data'><pre>array([[0.24, 0.24, 0.24, ..., 0.24, 0.24, 0.24],\n",
       "       [ nan,  nan,  nan, ...,  nan,  nan,  nan],\n",
       "       [ nan,  nan,  nan, ...,  nan,  nan,  nan],\n",
       "       ...,\n",
       "       [ nan,  nan,  nan, ...,  nan,  nan,  nan],\n",
       "       [ nan,  nan,  nan, ...,  nan,  nan,  nan],\n",
       "       [ nan,  nan,  nan, ...,  nan,  nan,  nan]])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>POC</span></div><div class='xr-var-dims'>(time, nface)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>4.356 4.356 4.356 ... nan nan nan</div><input id='attrs-d5e588cd-62ae-469b-8cb9-9de202329076' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-d5e588cd-62ae-469b-8cb9-9de202329076' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-dd1f7cd4-110c-4a25-8215-48b58f4ec4d5' class='xr-var-data-in' type='checkbox'><label for='data-dd1f7cd4-110c-4a25-8215-48b58f4ec4d5' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>Units :</span></dt><dd>mg/L</dd></dl></div><div class='xr-var-data'><pre>array([[4.356, 4.356, 4.356, ..., 4.356, 4.356, 4.356],\n",
       "       [  nan,   nan,   nan, ...,   nan,   nan,   nan],\n",
       "       [  nan,   nan,   nan, ...,   nan,   nan,   nan],\n",
       "       ...,\n",
       "       [  nan,   nan,   nan, ...,   nan,   nan,   nan],\n",
       "       [  nan,   nan,   nan, ...,   nan,   nan,   nan],\n",
       "       [  nan,   nan,   nan, ...,   nan,   nan,   nan]])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>DOC</span></div><div class='xr-var-dims'>(time, nface)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>1.0 1.0 1.0 1.0 ... nan nan nan nan</div><input id='attrs-4591c40d-5c30-41c8-92a8-43fe6eb6418e' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-4591c40d-5c30-41c8-92a8-43fe6eb6418e' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-a6af593f-6513-4e5e-b3e8-8c19451b629b' class='xr-var-data-in' type='checkbox'><label for='data-a6af593f-6513-4e5e-b3e8-8c19451b629b' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>Units :</span></dt><dd>mg/L</dd></dl></div><div class='xr-var-data'><pre>array([[ 1.,  1.,  1., ...,  1.,  1.,  1.],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       ...,\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan]])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>DIC</span></div><div class='xr-var-dims'>(time, nface)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>1.0 1.0 1.0 1.0 ... nan nan nan nan</div><input id='attrs-d546018c-ba3f-4e66-a12f-aae540d57db0' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-d546018c-ba3f-4e66-a12f-aae540d57db0' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-c9440c1d-ca1f-46b4-bfd6-f1724c1cc448' class='xr-var-data-in' type='checkbox'><label for='data-c9440c1d-ca1f-46b4-bfd6-f1724c1cc448' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>Units :</span></dt><dd>mg/L</dd></dl></div><div class='xr-var-data'><pre>array([[ 1.,  1.,  1., ...,  1.,  1.,  1.],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       ...,\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan]])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>POM</span></div><div class='xr-var-dims'>(time, nface)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>1.0 1.0 1.0 1.0 ... nan nan nan nan</div><input id='attrs-8c20a7b0-6315-48e9-aaa6-db81f2af67ad' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-8c20a7b0-6315-48e9-aaa6-db81f2af67ad' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-b1f229c6-7023-4610-9601-b40fbf82d567' class='xr-var-data-in' type='checkbox'><label for='data-b1f229c6-7023-4610-9601-b40fbf82d567' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>Units :</span></dt><dd>mg/L</dd></dl></div><div class='xr-var-data'><pre>array([[ 1.,  1.,  1., ...,  1.,  1.,  1.],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       ...,\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan]])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>CBOD</span></div><div class='xr-var-dims'>(time, nface)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>1.0 1.0 1.0 1.0 ... nan nan nan nan</div><input id='attrs-0e5a2a15-27cc-469b-ad3e-bd76ce1fcd2e' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-0e5a2a15-27cc-469b-ad3e-bd76ce1fcd2e' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-938ca64d-e2fb-4c1a-aa68-13cc2bc82527' class='xr-var-data-in' type='checkbox'><label for='data-938ca64d-e2fb-4c1a-aa68-13cc2bc82527' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>Units :</span></dt><dd>mg/L</dd></dl></div><div class='xr-var-data'><pre>array([[ 1.,  1.,  1., ...,  1.,  1.,  1.],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       ...,\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan]])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>PX</span></div><div class='xr-var-dims'>(time, nface)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>1.0 1.0 1.0 1.0 ... nan nan nan nan</div><input id='attrs-f03ecd85-91b2-4bb2-874e-5755f6c178f4' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-f03ecd85-91b2-4bb2-874e-5755f6c178f4' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-88852e39-e053-42eb-9672-8f3aaa778be0' class='xr-var-data-in' type='checkbox'><label for='data-88852e39-e053-42eb-9672-8f3aaa778be0' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>Units :</span></dt><dd>mg/L</dd></dl></div><div class='xr-var-data'><pre>array([[ 1.,  1.,  1., ...,  1.,  1.,  1.],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       ...,\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan]])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>Alk</span></div><div class='xr-var-dims'>(time, nface)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>1.0 1.0 1.0 1.0 ... nan nan nan nan</div><input id='attrs-df646274-1252-4827-a179-8ed85048c22e' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-df646274-1252-4827-a179-8ed85048c22e' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-20058324-bd70-4e73-8e4a-fcd919e44152' class='xr-var-data-in' type='checkbox'><label for='data-20058324-bd70-4e73-8e4a-fcd919e44152' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>Units :</span></dt><dd>mg/L</dd></dl></div><div class='xr-var-data'><pre>array([[ 1.,  1.,  1., ...,  1.,  1.,  1.],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       ...,\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan],\n",
       "       [nan, nan, nan, ..., nan, nan, nan]])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>wetted_surface_area</span></div><div class='xr-var-dims'>(time, nface)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>0.0 0.0 0.0 0.0 ... 0.0 0.0 0.0 0.0</div><input id='attrs-2b990ddb-a940-4bcb-b493-cf75dd8fd22f' class='xr-var-attrs-in' type='checkbox' disabled><label for='attrs-2b990ddb-a940-4bcb-b493-cf75dd8fd22f' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-101fd064-cf98-4106-b63c-893f6c4f4f4a' class='xr-var-data-in' type='checkbox'><label for='data-101fd064-cf98-4106-b63c-893f6c4f4f4a' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'></dl></div><div class='xr-var-data'><pre>array([[0., 0., 0., ..., 0., 0., 0.],\n",
       "       [0., 0., 0., ..., 0., 0., 0.],\n",
       "       [0., 0., 0., ..., 0., 0., 0.],\n",
       "       ...,\n",
       "       [0., 0., 0., ..., 0., 0., 0.],\n",
       "       [0., 0., 0., ..., 0., 0., 0.],\n",
       "       [0., 0., 0., ..., 0., 0., 0.]])</pre></div></li></ul></div></li><li class='xr-section-item'><input id='section-bb6266c1-54ce-411e-a17f-b63ac47fd8d6' class='xr-section-summary-in' type='checkbox'  ><label for='section-bb6266c1-54ce-411e-a17f-b63ac47fd8d6' class='xr-section-summary' >Indexes: <span>(1)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'><li class='xr-var-item'><div class='xr-index-name'><div>time</div></div><div class='xr-index-preview'>PandasIndex</div><div></div><input id='index-f28dc9c7-863d-481f-8c52-b9b562e14fb5' class='xr-index-data-in' type='checkbox'/><label for='index-f28dc9c7-863d-481f-8c52-b9b562e14fb5' title='Show/Hide index repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-index-data'><pre>PandasIndex(DatetimeIndex([&#x27;2022-05-13 08:00:00&#x27;, &#x27;2022-05-13 08:00:30&#x27;,\n",
       "               &#x27;2022-05-13 08:01:00&#x27;, &#x27;2022-05-13 08:01:30&#x27;,\n",
       "               &#x27;2022-05-13 08:02:00&#x27;, &#x27;2022-05-13 08:02:30&#x27;,\n",
       "               &#x27;2022-05-13 08:03:00&#x27;, &#x27;2022-05-13 08:03:30&#x27;,\n",
       "               &#x27;2022-05-13 08:04:00&#x27;, &#x27;2022-05-13 08:04:30&#x27;,\n",
       "               ...\n",
       "               &#x27;2022-05-14 07:55:30&#x27;, &#x27;2022-05-14 07:56:00&#x27;,\n",
       "               &#x27;2022-05-14 07:56:30&#x27;, &#x27;2022-05-14 07:57:00&#x27;,\n",
       "               &#x27;2022-05-14 07:57:30&#x27;, &#x27;2022-05-14 07:58:00&#x27;,\n",
       "               &#x27;2022-05-14 07:58:30&#x27;, &#x27;2022-05-14 07:59:00&#x27;,\n",
       "               &#x27;2022-05-14 07:59:30&#x27;, &#x27;2022-05-14 08:00:00&#x27;],\n",
       "              dtype=&#x27;datetime64[ns]&#x27;, name=&#x27;time&#x27;, length=2881, freq=None))</pre></div></li></ul></div></li><li class='xr-section-item'><input id='section-76152f22-2535-469a-a95f-2894addbc653' class='xr-section-summary-in' type='checkbox'  ><label for='section-76152f22-2535-469a-a95f-2894addbc653' class='xr-section-summary' >Attributes: <span>(13)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><dl class='xr-attrs'><dt><span>Conventions :</span></dt><dd>CF-1.8 UGRID-1.0 Deltares-0.10</dd><dt><span>diffusion_coefficient :</span></dt><dd>0.1</dd><dt><span>volume_calculation_required :</span></dt><dd>False</dd><dt><span>face_area_calculation_required :</span></dt><dd>False</dd><dt><span>face_area_elevation_info :</span></dt><dd>Empty DataFrame\n",
       "Columns: []\n",
       "Index: []</dd><dt><span>face_area_elevation_values :</span></dt><dd>Empty DataFrame\n",
       "Columns: []\n",
       "Index: []</dd><dt><span>face_normalunitvector_and_length :</span></dt><dd>Empty DataFrame\n",
       "Columns: []\n",
       "Index: []</dd><dt><span>face_cell_indexes_df :</span></dt><dd>Empty DataFrame\n",
       "Columns: []\n",
       "Index: []</dd><dt><span>face_volume_elevation_info :</span></dt><dd>Empty DataFrame\n",
       "Columns: []\n",
       "Index: []</dd><dt><span>face_volume_elevation_values :</span></dt><dd>Empty DataFrame\n",
       "Columns: []\n",
       "Index: []</dd><dt><span>boundary_data :</span></dt><dd>Empty DataFrame\n",
       "Columns: []\n",
       "Index: []</dd><dt><span>units :</span></dt><dd>Metric</dd><dt><span>nreal :</span></dt><dd>366</dd></dl></div></li></ul></div></div>"
      ],
      "text/plain": [
       "<xarray.Dataset>\n",
       "Dimensions:                  (node: 549, time: 2881, nface: 444, nmax_face: 8,\n",
       "                              nedge: 915, 2: 2)\n",
       "Coordinates:\n",
       "    node_x                   (node) float64 5.004e+05 5.005e+05 ... 5.024e+05\n",
       "    node_y                   (node) float64 2.381e+03 2.376e+03 ... 500.0 500.0\n",
       "  * time                     (time) datetime64[ns] 2022-05-13T08:00:00 ... 20...\n",
       "    face_x                   (nface) float64 5.005e+05 5.006e+05 ... 5.024e+05\n",
       "    face_y                   (nface) float64 2.45e+03 2.45e+03 ... 500.0 564.4\n",
       "Dimensions without coordinates: node, nface, nmax_face, nedge, 2\n",
       "Data variables: (12/40)\n",
       "    mesh2d                   int32 0\n",
       "    face_nodes               (nface, nmax_face) int32 0 1 2 3 ... -1 -1 -1 -1\n",
       "    edge_nodes               (nedge, 2) int32 0 1 1 2 2 3 ... 43 547 418 548 519\n",
       "    edge_face_connectivity   (nedge, 2) int32 0 207 0 208 0 ... 194 442 329 443\n",
       "    edges_face1              (nedge) int32 0 0 0 0 207 207 ... 366 0 19 194 329\n",
       "    edges_face2              (nedge) int32 207 208 1 367 208 ... 440 441 442 443\n",
       "    ...                       ...\n",
       "    DIC                      (time, nface) float64 1.0 1.0 1.0 ... nan nan nan\n",
       "    POM                      (time, nface) float64 1.0 1.0 1.0 ... nan nan nan\n",
       "    CBOD                     (time, nface) float64 1.0 1.0 1.0 ... nan nan nan\n",
       "    PX                       (time, nface) float64 1.0 1.0 1.0 ... nan nan nan\n",
       "    Alk                      (time, nface) float64 1.0 1.0 1.0 ... nan nan nan\n",
       "    wetted_surface_area      (time, nface) float64 0.0 0.0 0.0 ... 0.0 0.0 0.0\n",
       "Attributes: (12/13)\n",
       "    Conventions:                       CF-1.8 UGRID-1.0 Deltares-0.10\n",
       "    diffusion_coefficient:             0.1\n",
       "    volume_calculation_required:       False\n",
       "    face_area_calculation_required:    False\n",
       "    face_area_elevation_info:          Empty DataFrame\\nColumns: []\\nIndex: []\n",
       "    face_area_elevation_values:        Empty DataFrame\\nColumns: []\\nIndex: []\n",
       "    ...                                ...\n",
       "    face_cell_indexes_df:              Empty DataFrame\\nColumns: []\\nIndex: []\n",
       "    face_volume_elevation_info:        Empty DataFrame\\nColumns: []\\nIndex: []\n",
       "    face_volume_elevation_values:      Empty DataFrame\\nColumns: []\\nIndex: []\n",
       "    boundary_data:                     Empty DataFrame\\nColumns: []\\nIndex: []\n",
       "    units:                             Metric\n",
       "    nreal:                             366"
      ]
     },
     "execution_count": 16,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "transport_model.mesh"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "ef31e680-4792-4e1d-85b0-ab682dd36a53",
   "metadata": {},
   "source": [
    "### Clearwater-Modules\n",
    "\n",
    "#### Initial State Values\n",
    "The initial state values come from Clearwater-riverine mesh at the first timestep. First, let's define the variables that will be passed from Riverine to Modules and note any differences in naming conventions between our models:"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 17,
   "id": "d59ba9cc-cd6d-4f7c-982c-8fadb474390f",
   "metadata": {},
   "outputs": [],
   "source": [
    "riverine_to_modules = [\n",
    "    'Ap',\n",
    "    'DOX',\n",
    "    'NH4',\n",
    "    'NO3',\n",
    "    'TIP',\n",
    "    'Ab',\n",
    "    'OrgN',\n",
    "    'N2',\n",
    "    'OrgP',\n",
    "    'POC',\n",
    "    'DOC',\n",
    "    'DIC',\n",
    "    'POM',\n",
    "    'CBOD',\n",
    "    'PX',\n",
    "    'Alk',\n",
    "    'water_temp_c',\n",
    "    'volume',\n",
    "    'surface_area'\n",
    "]\n",
    "\n",
    "modules_to_riverine_matching = {\n",
    "    'water_temp_c': 'temperature',\n",
    "    'surface_area': 'wetted_surface_area'\n",
    "}"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 18,
   "id": "befc95d9-663d-42f7-9f96-ec96821dcf40",
   "metadata": {},
   "outputs": [],
   "source": [
    "# Provide xr.data array values for initial state values\n",
    "initial_state_values = {}\n",
    "for state_variable_name in riverine_to_modules:\n",
    "    if state_variable_name in modules_to_riverine_matching:\n",
    "        riverine_key = modules_to_riverine_matching[state_variable_name]\n",
    "    else:\n",
    "        riverine_key = state_variable_name\n",
    "\n",
    "    initial_state_values[state_variable_name] = transport_model.mesh[riverine_key].isel(\n",
    "        time=0,\n",
    "        nface=slice(0, transport_model.mesh.nreal+1)\n",
    "    )"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 19,
   "id": "8661c089-7c30-4bd4-91d7-5c84430ec852",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "dict_keys(['Ap', 'DOX', 'NH4', 'NO3', 'TIP', 'Ab', 'OrgN', 'N2', 'OrgP', 'POC', 'DOC', 'DIC', 'POM', 'CBOD', 'PX', 'Alk', 'water_temp_c', 'volume', 'surface_area'])"
      ]
     },
     "execution_count": 19,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "# View the initial state values\n",
    "initial_state_values.keys()"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "738c906c-2143-404a-982c-cba751248fc1",
   "metadata": {},
   "source": [
    "#### Meteorological Parameters\n",
    "The meteorological parameters that we'll be adjusting for this model is `q_solar`. In this example, `q_solar` is pulled from meteorological stations in Arizona. \n",
    "\n",
    "We will need to interpolate these datasets to our model timestep. First, we create a time index from our transport model's xarray time coordinate to interpolate our data to:"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 20,
   "id": "abc09be6-f808-49bc-b6e9-dc2f792928d6",
   "metadata": {},
   "outputs": [],
   "source": [
    "xarray_time_index = pd.DatetimeIndex(\n",
    "    transport_model.mesh.time.values\n",
    ")"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "48f7491a-25ee-48cb-8609-4c174ff53073",
   "metadata": {},
   "source": [
    "Next, interpolate the meteorological station data to the same timestep as our model. To simplify this process in this example, we leverage the `process_meteo_data` function in the shared modules within this example folder."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 21,
   "id": "0145082a-c55b-43be-abd0-75647b5863bb",
   "metadata": {},
   "outputs": [],
   "source": [
    "# Read CSV data into pandas dataframes\n",
    "q_solar = process_meteo_data(\n",
    "    q_solar_path,\n",
    "    xarray_time_index,\n",
    "    'q_Solar'\n",
    ")\n"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "33ad829f-53c3-4f7d-bd80-5bf1fe97ba75",
   "metadata": {},
   "source": [
    "Finally, we can create dictionaries containing all meteorological data and the initial conditions. These will be used as inputs to Clearwater Modules. "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 22,
   "id": "0964e5b0-b9b4-4299-bfe5-2514eaf4b795",
   "metadata": {},
   "outputs": [],
   "source": [
    "# process for clearwater-modules input\n",
    "q_solar_array = q_solar.q_solar.to_numpy()\n",
    "\n",
    "# for each individual timestep\n",
    "all_meteo_params = {\n",
    "    'q_solar': q_solar_array,\n",
    "}\n",
    "\n",
    "# for initial conditions\n",
    "initial_meteo_params = {\n",
    "    'q_solar': q_solar_array[0],\n",
    "}"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "3de51ffc-f0b8-4502-8d57-da655dc95467",
   "metadata": {},
   "source": [
    "#### Define Input Parameters\n",
    "\n",
    "Clearwater Modules has many input parameters for NSMI that have default values. We may want to specify or update some of these default values, which we can do with dictionaries.\n",
    "\n",
    "Here, we will provide algae parameters and global parameters, and global variables:"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 23,
   "id": "92d2243b-d52c-439d-bef4-8b5fe48fd216",
   "metadata": {},
   "outputs": [],
   "source": [
    "algae_parameters = {\n",
    "    'AWd': 100,\n",
    "    'AWc': 40,\n",
    "    'AWn': 7.2,\n",
    "    'AWp': 1,\n",
    "    'AWa': 1000,\n",
    "    'KL': 10,\n",
    "    'KsN': 0.04,\n",
    "    'KsP': 0.0012,\n",
    "    'mu_max_20': 1,\n",
    "    'kdp_20': 0.15,\n",
    "    'krp_20': 0.2,\n",
    "    'vsap': 0.15,\n",
    "    'growth_rate_option': 3,\n",
    "    'light_limitation_option': 1 \n",
    "    }"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 24,
   "id": "c680c33f-da45-4fe9-9b37-1fc3a7662450",
   "metadata": {},
   "outputs": [],
   "source": [
    "global_parameters = {\n",
    "    'use_NH4': True,\n",
    "    'use_NO3': True, \n",
    "    'use_OrgN': False,\n",
    "    'use_OrgP': False,\n",
    "    'use_TIP': True,  \n",
    "    'use_SedFlux': False,\n",
    "    'use_DOX': True,\n",
    "    'use_Algae': True,\n",
    "    'use_Balgae': False,\n",
    "    'use_POC': False,\n",
    "    'use_DOC': False,\n",
    "    'use_DIC': False,\n",
    "    'use_N2': False,\n",
    "    'use_Pathogen': False,\n",
    "    'use_Alk': False,\n",
    "    'use_POM': False,\n",
    "    'use_CBOD': False \n",
    "}"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 25,
   "id": "99541546-5d82-4576-b21c-c23495dd6d1a",
   "metadata": {},
   "outputs": [],
   "source": [
    "global_vars = {\n",
    "    'vson': 0.01,\n",
    "    'vsoc': 0.01,\n",
    "    'vsop': 0.01,\n",
    "    'vs': 0.01,\n",
    "    'SOD_20': .5,\n",
    "    'SOD_theta': 1.047,\n",
    "    'vb': 0.01,\n",
    "    'fcom': 0.4,\n",
    "    'kaw_20_user': 0,\n",
    "    'kah_20_user': 1,\n",
    "    'hydraulic_reaeration_option': 1,\n",
    "    'wind_reaeration_option': 1,    \n",
    "    'dt': 0.0003472222, #this is 30 seconds in days: 1/((24*60*60)/30)\n",
    "    'depth': 1.5, #this is the default depth; future example will use hydro output\n",
    "    'TwaterC': 25, #this is the default water temp; future example will couple with TSM output\n",
    "    'theta': 1.047,\n",
    "    'velocity': 1, #this is the default velocity; future example will use hydro output\n",
    "    'flow': 150,\n",
    "    'topwidth': 100,\n",
    "    'slope': .0002,\n",
    "    'shear_velocity': 0.05334,\n",
    "    'pressure_atm': 1013.25,\n",
    "    'wind_speed': 3,\n",
    "    'q_solar': initial_meteo_params['q_solar'],\n",
    "    'Solid': 1,\n",
    "    'lambda0': 0.02,\n",
    "    'lambda1': 0.0088,\n",
    "    'lambda2': 0.054,\n",
    "    'lambdas': 0.056,\n",
    "    'lambdam': 0.174, \n",
    "    'Fr_PAR': 0.47\n",
    "}"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "076d83a5-7535-4a04-85b0-8b1747de4918",
   "metadata": {},
   "source": [
    "View a full list of optional input parameters below:"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 26,
   "id": "a0374aa4-be09-4ec3-ae53-4a3960b5b623",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "<function clearwater_modules.nsm1.model.NutrientBudget.__init__(self, time_steps: int, initial_state_values: Optional[dict[str, float | int | bool]] = None, updateable_static_variables: Optional[list[str]] = None, algae_parameters: Optional[dict[str, float]] = None, alkalinity_parameters: Optional[dict[str, float]] = None, balgae_parameters: Optional[dict[str, float]] = None, carbon_parameters: Optional[dict[str, float]] = None, CBOD_parameters: Optional[dict[str, float]] = None, DOX_parameters: Optional[dict[str, float]] = None, nitrogen_parameters: Optional[dict[str, float]] = None, POM_parameters: Optional[dict[str, float]] = None, N2_parameters: Optional[dict[str, float]] = None, phosphorus_parameters: Optional[dict[str, float]] = None, pathogen_parameters: Optional[dict[str, float]] = None, global_parameters: Optional[dict[str, float]] = None, global_vars: Optional[dict[str, float]] = None, track_dynamic_variables: bool = True, hotstart_dataset: Optional[xarray.core.dataset.Dataset] = None, time_dim: Optional[str] = None) -> None>"
      ]
     },
     "execution_count": 26,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "NutrientBudget.__init__"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "782cbe25-8c4f-4a3b-a134-3507bf20f247",
   "metadata": {},
   "source": [
    "#### Instantiate Clearwater Modules\n",
    "We instantiate Clearwater Modules with the following:\n",
    "* `time_steps` (required): the number of timesteps to run. \n",
    "* `initial_state_values` (required): our initial conditions for each state variable will be used here\n",
    "* `updateable_static_variables` (optional): by default, the global variables are static in NSMI. If we want these to update over time, we must provide a list of variables that we want to be updateable as input when instantiating the model.\n",
    "* `algae_parameters` (optional): update parameters for algae. If not provided, all algae parameters will fall to default values.\n",
    "* `global_parameters` (optional): update global parameters. If not provided, all global parameters will fall to default values.\n",
    "* `global_variables` (optional): update global variables. If not provided, all values will fall to default values.\n",
    "* `track_dynamic_variables` (optional): boolean indicating whether or not the user wants to track all intermediate information used in the calculations. We set this to `False` to save on memory.\n",
    "* `time_dim` (optional): the model timestep\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 27,
   "id": "25d4f150",
   "metadata": {},
   "outputs": [],
   "source": [
    "time_steps = len(transport_model.mesh.time)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 28,
   "id": "86b811c9-f20b-4d23-8af4-85cd2a7876b0",
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Initializing from dicts...\n",
      "Model initialized from input dicts successfully!.\n"
     ]
    }
   ],
   "source": [
    "reaction_model = NutrientBudget(\n",
    "    time_steps=time_steps,\n",
    "    initial_state_values=initial_state_values,\n",
    "    updateable_static_variables=['q_solar'],\n",
    "    algae_parameters=algae_parameters,\n",
    "    global_parameters=global_parameters,\n",
    "    global_vars = global_vars,\n",
    "    track_dynamic_variables=False,\n",
    "    time_dim='seconds'\n",
    ")"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "2d2da52a-724d-46c7-9ed7-fda8bedfa6f3",
   "metadata": {},
   "source": [
    "## Couple Models\n",
    "\n",
    "### Set-Up Coupling Function\n",
    "Now that we have instantiated both our `Clearwater-Riverine` and `Clearwater-Modules` models, we can couple them. We will do so using the `run_n_timesteps` function, which runs `n` number of timesteps, with the following process:\n",
    "1. Optionally sets up a logger. \n",
    "2. Top of the timestep: Increment the transport model (Riverine). After the first timestep, information from Clearwater-Modules will be passed back into Clearwater-Riverine.\n",
    "3. Create inputs for Clearwater Modules with outputs from Clearwater Riverine and meteorological data\n",
    "4. Bottom of the tiemestep: Increment the reaction model (Modules).\n",
    "5. Create inputs for Clearwater Riverine with outputs from Clearwater Modules.\n",
    "\n",
    "See [03_coupling_riverine_modules_tsm.ipynb](./03_coupling_riverine_modules_tsm.ipynb) for a full description of all inputs to the `run_n_timesteps` function."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 29,
   "id": "32e3aed0-8dad-4767-bd0f-2bfe5308b4fe",
   "metadata": {},
   "outputs": [],
   "source": [
    "def run_n_timesteps(\n",
    "    time_steps: int,\n",
    "    reaction: Model,\n",
    "    transport: cwr.ClearwaterRiverine,\n",
    "    meteo_params: dict,\n",
    "    riverine_to_modules: list,\n",
    "    modules_to_riverine: list,\n",
    "    modules_to_riverine_matching={},\n",
    "    concentration_update=None,\n",
    "    logging=False,\n",
    "    log_file_name='log',\n",
    "    logging_interval=5000,\n",
    "):\n",
    "    \"\"\"Function to couple Clearwater Riverine and Modules for n timesteps.\"\"\"\n",
    "\n",
    "    # 1. Set up logger\n",
    "    if logging:\n",
    "        logger = setup_function_logger(f'{log_file_name}')\n",
    "\n",
    "    # Loop through all timesteps\n",
    "    for i in range(1, time_steps):\n",
    "        if logging:\n",
    "            if i % logging_interval == 0:\n",
    "                status = {\n",
    "                    'timesteps': i,\n",
    "                    'cwr': transport.mesh.nbytes * 1e-9,\n",
    "                    'cwm': reaction.dataset.nbytes*1e-9,\n",
    "                }\n",
    "                logger.debug(status)\n",
    "\n",
    "        # 2. Top of timestep: Update transport model\n",
    "        transport.update(concentration_update)\n",
    "\n",
    "        # 3. Update state values\n",
    "        # 3.1 Update using outputs from Clearwater Riverine\n",
    "        updated_state_values = {}\n",
    "        for state_variable_name in riverine_to_modules:\n",
    "            if state_variable_name in modules_to_riverine_matching:\n",
    "                riverine_key = modules_to_riverine_matching[state_variable_name]\n",
    "            else:\n",
    "                riverine_key = state_variable_name\n",
    "            updated_state_values[state_variable_name] = transport.mesh[riverine_key].isel(\n",
    "                    time=i,\n",
    "                    nface=slice(0, transport.mesh.nreal + 1)\n",
    "            )\n",
    "\n",
    "        # 3.2 Update meteorological inputs\n",
    "        for meteo_param in meteo_params.keys():\n",
    "            updated_state_values[meteo_param] = xr.full_like(\n",
    "                updated_state_values[riverine_to_modules[0]],\n",
    "                meteo_params[meteo_param][i]\n",
    "            )\n",
    "\n",
    "        # 4. Bottom of timestep: update energy budget (TSM)\n",
    "        reaction.increment_timestep(updated_state_values)\n",
    "\n",
    "        # 5. Prepare data for input back into Riverine\n",
    "        concentration_update = {}\n",
    "        for variable in modules_to_riverine:\n",
    "            if variable in modules_to_riverine_matching:\n",
    "                riverine_key = modules_to_riverine_matching[variable]\n",
    "            else:\n",
    "                riverine_key = variable\n",
    "\n",
    "            reaction.dataset[variable] = reaction.dataset[variable].where(\n",
    "                ~np.isinf(reaction.dataset[variable]),\n",
    "                transport.mesh[riverine_key].isel(\n",
    "                    nface=slice(0, transport.mesh.nreal+1),\n",
    "                    time=i\n",
    "                )\n",
    "            )\n",
    "            reaction.dataset[variable] = reaction.dataset[variable].fillna(\n",
    "                transport.mesh[riverine_key].isel(\n",
    "                    nface=slice(0, transport.mesh.nreal+1),\n",
    "                    time=i\n",
    "                )\n",
    "            )\n",
    "            concentration_update[riverine_key] = reaction.dataset[variable].isel(seconds=i)\n"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "a87ebdad-c1e3-448c-8b29-7afb45f8b9c3",
   "metadata": {},
   "source": [
    "### Run the Coupling Function\n",
    "Earlier in the notebook, we set up most of what we need to couple the models. However, we still need to define a few key inputs that help pass information back and forth between Clearwater Riverine with the following input parameters:\n",
    "* `riverine_to_modules`: Defined above. \n",
    "* `modules_to_riverine`: We are passing several variables from Modules back to Riverine, which we will still need to define.\n",
    "* `modules_to_riverine_matching`: Defined above."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 30,
   "id": "bcce6c18-ff78-4b15-935c-65411cb63f30",
   "metadata": {},
   "outputs": [],
   "source": [
    "riverine_to_modules = riverine_to_modules[:-3]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 31,
   "id": "cc8f4f33-7522-40d8-854a-95355c7b05a5",
   "metadata": {},
   "outputs": [],
   "source": [
    "modules_to_riverine = [\"Ap\", \"DOX\", \"NH4\", \"NO3\", \"TIP\"]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 32,
   "id": "408f2fbe-ffbd-4cfb-afa2-45df1a5526f2",
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "CPU times: total: 36min 3s\n",
      "Wall time: 37min 7s\n"
     ]
    }
   ],
   "source": [
    "%%time\n",
    "run_n_timesteps(\n",
    "    time_steps=time_steps,\n",
    "    reaction=reaction_model,\n",
    "    transport=transport_model,\n",
    "    meteo_params=all_meteo_params,\n",
    "    riverine_to_modules=riverine_to_modules,\n",
    "    modules_to_riverine=modules_to_riverine,\n",
    "    modules_to_riverine_matching=modules_to_riverine_matching\n",
    ")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 34,
   "id": "d5ce5d8b",
   "metadata": {},
   "outputs": [],
   "source": [
    "zarr_outpath = test_case_path / 'output.zarr'\n",
    "netCDF_outpath = test_case_path / 'output.nc'\n",
    "transport_model.finalize(True, zarr_outpath)\n",
    "transport_model.finalize(True, netCDF_outpath)\n",
    "\n",
    "#open \"03_coupling_riverine_NSM_modules_(2_plotSimulation).ipynb\" to\n",
    "#load save model results and plot results"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "db99ea51",
   "metadata": {},
   "outputs": [],
   "source": []
  }
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