+
+
+
+
+ 
+ 
+
+ |
+
+
+ Lesson 00: Load
+
+
+ Load DICOM Data and get a nice Series/Stack/Frame structure.
+
+ |
+
+
+
+
+ 
+
+
+ |
+
+
+ Lesson 01: Visualize 3D
+
+
+ Look at the data we loaded in 3D.
+
+ |
+
+
+
+
+
+
+ 
+
+
+ |
+
+
+ Lesson 02: Mesh
+
+
+ Add a mesh to the scene.
+
+ |
+
+
+
+
+ 
+
+
+ |
+
+
+ Lesson 03: Visualize 2D
+
+
+ Look at the data in 2D.
+
+ |
+
+
+
+ |
+
+
+
+
+ |
+
+
+ Lesson 04: Labelmap
+
+
+ Label maps - coming soon.
+
+ |
+
+
+
+
+
+
+
+ |
+
+
+ Lesson 05: TRK
+
+
+ TRK - coming soon.
+
+ |
+
+
+
+ |
+
+
+
+
+ |
+
+
+ Lesson 06: Volume Rendering
+
+
+ Volume Rendering - coming soon.
+
+ |
+
+
+
+
+
+
+
+ |
+
+
+ Lesson 07: Lookup tables
+
+
+ Lookup Tables - coming soon.
+
+ |
+
+
+
+## Advanced
+
+See it live [there](https://fnndsc.github.io/ami)!
+
+## Features
+:white_check_mark: READY - :large_orange_diamond: IN PROGRESS OR LIMITED SUPPORT - :x: ON ROADMAP
+#### Capabilities
+:white_check_mark: 2D Visulization
+
+:white_check_mark: 3D Visualization
+
+:white_check_mark: Volume Rendering
+
+:white_check_mark: Lookup Tables
+
+:large_orange_diamond: Label Maps
+
+#### Widgets
+
+:large_orange_diamond: Probe (2D/3D)
+
+:large_orange_diamond: Ruler (2D/3D)
+
+:large_orange_diamond: Angle (2D/3D)
+
+:large_orange_diamond: Orientation (2D/3D)
+
+#### Volumes
+
+:white_check_mark: Dicom
+
+:white_check_mark: NRRD
+
+:large_orange_diamond: Nifti
+
+:x: MGH/MGZ
+
+:x: JPEG
+
+#### Meshes
+
+:white_check_mark: VTK (THREEJS)
+
+:white_check_mark: STL (THREEJS)
+
+:large_orange_diamond: TRK
+
+:x: CURV
+
+:x: FSM
+
+## Usage
+
+If you know how to use THREEJS, you already know out to use AMI. Learn about THREEJS then checkout the lessons, examples and the API to dive in!
+
+## Pre-requisites
+
+### THREEJS
+Make sure that you are loading THREEJS your index.html **BEFORE** AMI.
+```
+
+```
+
+### Promise polyfills (for older browsers)
+Follow the instructions from [babel's wiki](http://babeljs.io/docs/usage/polyfill/) or just use one of the many Promise polyfill available out there.
+
+**NOT FOR PRODUCTION**: available for convenience at:
+```
+
+```
+
+## NPM
+
+### Installation
+
+
+```
+npm install ami.js
+```
+
+Note that you might need to include [babel](https://github.com/babel/babel) and [glslify](https://github.com/stackgl/glslify) transforms in you build (browserify, webpack, etc.) process.
+```
+...
+browserify(
+ {entries: [entry],
+ debug: true
+ })
+ .transform(babelify, {"presets": ["es2015"]})
+ .transform(glslify)
+ .bundle()
+...
+```
+
+### Usage
+
+```
+let AMI = require('ami.js');
+window.console.log(AMI);
+
+// Ready to rock
+```
+
+## Compiled
+
+### Installation
+Add AMI in your index.html after THREEJS.
+```
+...
+
+
+...
+```
+
+### Usage
+```
+let AMI = AMI.default;
+window.console.log(AMI);
+
+// Ready to rock
+```
+
+## Developer corner
+Get the source code and related packages.
+```
+$> git clone https://github.com/FNNDSC/ami.git
+$> cd ami
+$> npm install
+```
+
+Default task (runs tests, documentation, etc. and create a directory ready to be pushed as gh-page)
+```
+$> gulp
+```
+
+To run examples (browserify/babelify/glslify the example)
+```
+$> gulp examples --
AMI JS ToolKit
+> AMI Medical Imaging (AMI) JS ToolKit for THREEJS
+
+### Content
+
+1. [Lessons](#lessons)
+2. [Advanced examples](#advanced)
+2. [Features](#features)
+3. [Usage](#usage)
+4. [Pre-requisites](#pre-requisites)
+5. [Use with NPM](#npm)
+6. [Use compiled version](#compiled)
+7. [API Documentation](https://fnndsc.github.io/ami/doc)
+8. [Developer corner](https://fnndsc.github.io/ami/doc)
+9. [Credits](#credits)
+
+## Lessons
+