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executable file
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tcPDA.m
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function tcPDA(~,~)
global tcPDAstruct UserValues
h = findobj('Name','tcPDA');
addpath(genpath(['.' filesep 'functions']));
LSUserValues(0);
value_dummy = [1,50,2,50,2,50,2,0,0,0]';
fixed_dummy = [false,false,false,false,false,false,false,true,true,true]';
LB_dummy = [0,1,1,1,1,1,1,-100,-100,-100]';%[0,0,0,0,0,0,0,-Inf,-Inf,-Inf]';
UB_dummy = [1,150,10,150,10,150,10,100,100,100]';%[Inf,150,10,150,10,150,10,Inf,Inf,Inf]';
for i = 1:10
tcPDAstruct.fitdata.param{i} = value_dummy;
tcPDAstruct.fitdata.fixed{i} = fixed_dummy;
tcPDAstruct.fitdata.LB{i} = LB_dummy;
tcPDAstruct.fitdata.UB{i} = UB_dummy;
tcPDAstruct.fitdata.use_prior{i} = false(10,1);
tcPDAstruct.fitdata.prior_center{i} = value_dummy;
tcPDAstruct.fitdata.prior_sigma{i} = 0.1*value_dummy;
end
if isempty(h)
%GUI definition
handles.colormap = [1,0,0;0.986666679382324,0.0533333346247673,0.0533333346247673;0.973333358764648,0.106666669249535,0.106666669249535;0.959999978542328,0.159999996423721,0.159999996423721;0.946666657924652,0.213333338499069,0.213333338499069;0.933333337306976,0.266666680574417,0.266666680574417;0.920000016689301,0.319999992847443,0.319999992847443;0.906666696071625,0.373333334922791,0.373333334922791;0.893333315849304,0.426666676998138,0.426666676998138;0.879999995231628,0.480000019073486,0.480000019073486;0.866666674613953,0.533333361148834,0.533333361148834;0.853333353996277,0.586666703224182,0.586666703224182;0.840000033378601,0.639999985694885,0.639999985694885;0.826666653156281,0.693333327770233,0.693333327770233;0.813333332538605,0.746666669845581,0.746666669845581;0.800000011920929,0.800000011920929,0.800000011920929;0.812500000000000,0.812500000000000,0.812500000000000;0.824999988079071,0.824999988079071,0.824999988079071;0.837500035762787,0.837500035762787,0.837500035762787;0.850000023841858,0.850000023841858,0.850000023841858;0.862500011920929,0.862500011920929,0.862500011920929;0.875000000000000,0.875000000000000,0.875000000000000;0.887499988079071,0.887499988079071,0.887499988079071;0.899999976158142,0.899999976158142,0.899999976158142;0.912500023841858,0.912500023841858,0.912500023841858;0.925000011920929,0.925000011920929,0.925000011920929;0.937500000000000,0.937500000000000,0.937500000000000;0.949999988079071,0.949999988079071,0.949999988079071;0.962499976158142,0.962499976158142,0.962499976158142;0.975000023841858,0.975000023841858,0.975000023841858;0.987500011920929,0.987500011920929,0.987500011920929;1,1,1;0.987500011920929,0.987500011920929,0.987500011920929;0.975000023841858,0.975000023841858,0.975000023841858;0.962499976158142,0.962499976158142,0.962499976158142;0.949999988079071,0.949999988079071,0.949999988079071;0.937500000000000,0.937500000000000,0.937500000000000;0.925000011920929,0.925000011920929,0.925000011920929;0.912500023841858,0.912500023841858,0.912500023841858;0.899999976158142,0.899999976158142,0.899999976158142;0.887499988079071,0.887499988079071,0.887499988079071;0.875000000000000,0.875000000000000,0.875000000000000;0.862500011920929,0.862500011920929,0.862500011920929;0.850000023841858,0.850000023841858,0.850000023841858;0.837500035762787,0.837500035762787,0.837500035762787;0.824999988079071,0.824999988079071,0.824999988079071;0.812500000000000,0.812500000000000,0.812500000000000;0.800000011920929,0.800000011920929,0.800000011920929;0.750000000000000,0.750000000000000,0.812500000000000;0.699999988079071,0.699999988079071,0.824999988079071;0.650000035762787,0.650000035762787,0.837500035762787;0.600000023841858,0.600000023841858,0.850000023841858;0.550000011920929,0.550000011920929,0.862500011920929;0.500000000000000,0.500000000000000,0.875000000000000;0.450000017881393,0.450000017881393,0.887499988079071;0.400000005960465,0.400000005960465,0.899999976158142;0.349999994039536,0.349999994039536,0.912500023841858;0.300000011920929,0.300000011920929,0.925000011920929;0.250000000000000,0.250000000000000,0.937500000000000;0.200000002980232,0.200000002980232,0.949999988079071;0.150000005960464,0.150000005960464,0.962499976158142;0.100000001490116,0.100000001490116,0.975000023841858;0.0500000007450581,0.0500000007450581,0.987500011920929;0,0,1];
color_str = [lines(5);lines(5)*0.75];
handles.color_str = mat2cell(color_str,ones(size(color_str,1),1),size(color_str,2));
%define main window
handles.Figure = figure(...
'Units','normalized',...
'Name','tcPDA',...
'MenuBar','none',...
'NumberTitle','off',...
'OuterPosition',[0.05 0.05 0.9 0.9],...
'UserData',[],...
'Visible','on',...
'Tag','tcPDA',...
'Toolbar','figure',...
'defaultUicontrolFontName',UserValues.Look.Font,...
'defaultAxesFontName',UserValues.Look.Font,...
'defaultTextFontName',UserValues.Look.Font,...
'CloseRequestFcn',@close_tcPDA);
whitebg(handles.Figure, UserValues.Look.Axes);
set(handles.Figure,'Color',UserValues.Look.Back);
%set toolbar
set(handles.Figure,'Toolbar','figure');
handles.toolbar = findall(handles.Figure,'Type','uitoolbar');
toolbar_items = findall(handles.toolbar);
if verLessThan('matlab','9.5') %%% toolbar behavior changed in MATLAB 2018b
delete(toolbar_items([2:7 9 13:17]));
else %%% 2018b and upward
%%% just remove the tool bar since the options are now in the axis
%%% (e.g. axis zoom etc)
delete(toolbar_items);
end
handles.file_menu = uimenu(handles.Figure,'Label','File');
handles.load_button = uimenu(handles.file_menu,...
'Label','Load *.tcpda file',...
'Callback',@load_data,...
'Tag','Load_Button');
%define tabs
handles.tabgroup = uitabgroup(...
'Parent',handles.Figure,...
'Tag','Main_Tab',...
'Units','normalized',...
'Position',[0 0 0.7 1]);
handles.tab_1d = uitab(handles.tabgroup,...
'title','1D GR',...
'BackgroundColor', UserValues.Look.Back,...
'Tag','tab_1d');
handles.tab_2d= uitab(handles.tabgroup,...
'title','2D BG BR',...
'BackgroundColor', UserValues.Look.Back,...
'Tag','tab_2d');
handles.tab_3d= uitab(handles.tabgroup,...
'title','3D',...
'BackgroundColor', UserValues.Look.Back,...
'Tag','tab_3d');
handles.tab_bayesian = uitab(handles.tabgroup,...
'title','Bayesian',...
'BackgroundColor', UserValues.Look.Back,...
'Tag','tab_bayesian');
handles.tab_twocolorPDAData = uitab(handles.tabgroup,...
'title','Two-Color Data Sets',...
'BackgroundColor', UserValues.Look.Back,...
'Tag','tab_twocolorPDAData');
handles.tabgroup_side = uitabgroup(...
'Parent',handles.Figure,...
'Tag','Side_Tab',...
'Units','normalized',...
'Position',[0.7 0.1 0.3 0.9]);
handles.tab_fit_table = uitab(handles.tabgroup_side,...
'title','Fit Table',...
'BackgroundColor', UserValues.Look.Back,...
'Tag','tab_fit_table');
handles.tab_corrections= uitab(handles.tabgroup_side,...
'title','Corrections',...
'BackgroundColor', UserValues.Look.Back,...
'Tag','tab_corrections');
handles.tab_PDAData = uitab(handles.tabgroup_side,...
'title','1D PDA data',...
'BackgroundColor', UserValues.Look.Back,...
'Tag','tab_2cPDAData');
%%% fit progress axes
handles.fit_progress_panel = uibuttongroup(...
'Parent',handles.Figure,...
'Units','normalized',...
'Position',[0.7,0,0.3,0.1],...
'BackgroundColor',UserValues.Look.Back,...
'Tag','fit_progress_panel');
handles.fit_progress_axes = axes(...
'Parent',handles.fit_progress_panel,...
'Units','normalized',...
'Position',[0,0,1,1],...
'Color',UserValues.Look.Axes,...
'XColor',UserValues.Look.Fore,...
'YColor',UserValues.Look.Fore,...
'GridAlpha',0.5,...
'FontSize',10,...
'LineWidth', UserValues.Look.AxWidth,...
'XGrid','on',...
'nextplot','add',...
'YGrid','on',...
'Box','on',...
'Tag','fit_progress_axes');
handles.fit_progress_text = text(0,1,'red. \chi^2 = 0',...
'Parent',handles.fit_progress_axes,...
'HorizontalAlignment','center',...
'FontSize',14,...
'Color',[0,0,0]);
handles.fit_progress_text.Units = 'normalized';
handles.fit_progress_text.Position = [0.5,0.2];
handles.plots.fit_progress = plot(handles.fit_progress_axes,...
[0,1],[1,1],...
'LineStyle','-',...
'Color',[0 0.45 0.75],...%[0.85,0.33,0.1],...
'LineWidth',2,...
'Marker','none',...
'MarkerSize',5,...
'MarkerEdgeColor',[0 0.45 0.75],...
'MarkerFaceColor',[0 0.45 0.75]);
handles.fit_pause_button = uicontrol('Parent',handles.fit_progress_panel,...
'Style','pushbutton',...
'Tag','fit_pause_button',...
'Units','normalized',...
'Position',[0.68 0.74 0.15 0.25],...
'String','Pause',...
'BackgroundColor',UserValues.Look.Control,...
'ForegroundColor',UserValues.Look.Fore,...
'FontSize',10,...
'Enable','off',...
'Callback',[]);
handles.fit_cancel_button = uicontrol('Parent',handles.fit_progress_panel,...
'Style','pushbutton',...
'Tag','fit_cancel_button',...
'Units','normalized',...
'Position',[0.84 0.74 0.15 0.25],...
'String','Stop',...
'BackgroundColor',UserValues.Look.Control,...
'ForegroundColor',UserValues.Look.Fore,...
'FontSize',10,...
'Enable','off',...
'Callback',[]);
%define tables
%define table for corrections
data = {UserValues.tcPDA.corrections.ct_gr, UserValues.tcPDA.corrections.ct_bg, UserValues.tcPDA.corrections.ct_br,...
UserValues.tcPDA.corrections.de_gr, UserValues.tcPDA.corrections.de_bg, UserValues.tcPDA.corrections.de_br,...
UserValues.tcPDA.corrections.gamma_gr, UserValues.tcPDA.corrections.gamma_br,...
UserValues.tcPDA.corrections.BG_bb, UserValues.tcPDA.corrections.BG_bg, UserValues.tcPDA.corrections.BG_br,...
UserValues.tcPDA.corrections.BG_gg, UserValues.tcPDA.corrections.BG_gr,...
UserValues.tcPDA.corrections.R0_gr, UserValues.tcPDA.corrections.R0_bg, UserValues.tcPDA.corrections.R0_br}';
%data = {0,0,0,0,0,0,1,1,0,0,0,0,0,50,50,50}';
str_dummy = {'ct GR','ct BG','ct BR',...
'de GR', 'de BG', 'de BR',...
'gamma GR', 'gamma BR',...
'BG BB', 'BG BG', 'BG BR', 'BG GG', 'BG GR',...
'R0 GR','R0 BG','R0 BR'};
handles.corrections_table = uitable('Parent',handles.tab_corrections,...
'Data',data,...
'RowName',str_dummy,...
'ColumnName',{''},...
'Units','normalized',...
'FontSize',10,...
'Position',[0 0.4 1 0.425],...
'ColumnWidth',{100},...
'ColumnEditable',[true],...
'ForegroundColor',UserValues.Look.TableFore,...
'BackgroundColor',[UserValues.Look.Table1;UserValues.Look.Table2],...
'CellEditCallback',@update_corrections);
handles.sampling_text = uicontrol('Style','text',...
'Units','normalized',...
'Position',[0.05,0.96,0.45,0.03],...
'String','Monte-Carlo Oversampling:',...
'Tag','sampling_text',...
'FontSize',10,...
'BackgroundColor',UserValues.Look.Back,...
'ForegroundColor',UserValues.Look.Fore,...
'Parent',handles.tab_corrections);
handles.sampling_edit = uicontrol('Style','edit',...
'Units','normalized',...
'Position',[0.5,0.96,0.25,0.03],...
'String',num2str(UserValues.tcPDA.sampling),...
'FontSize',10,...
'Tag','sampling_edit',...
'BackgroundColor',UserValues.Look.Control,...
'ForegroundColor',UserValues.Look.Fore,...
'Parent',handles.tab_corrections,...
'Callback',@update_corrections);
handles.nbins_text = uicontrol('Style','text',...
'Units','normalized',...
'Position',[0.05,0.91,0.45,0.03],...
'String','# Bins for histograms:',...
'Tag','nbins_text',...
'FontSize',10,...
'BackgroundColor',UserValues.Look.Back,...
'ForegroundColor',UserValues.Look.Fore,...
'Parent',handles.tab_corrections);
handles.nbins_edit = uicontrol('Style','edit',...
'Units','normalized',...
'Position',[0.5,0.91,0.25,0.03],...
'String',num2str(UserValues.tcPDA.nbins),...
'FontSize',10,...
'Tag','nbins_edit',...
'BackgroundColor',UserValues.Look.Control,...
'ForegroundColor',UserValues.Look.Fore,...
'Parent',handles.tab_corrections,...
'Callback',@update_corrections);
handles.plottype_text = uicontrol('Style','text',...
'Units','normalized',...
'Position',[0.05,0.86,0.45,0.03],...
'String','Plot type:',...
'Tag','plottype_text',...
'TooltipString',['<html>Choose the way that the weighted residuals are plotted in 2d plots.<br>'...
'mesh: plots the fit as a mesh in addition to the data<br>'...
'colormap: plots the weighted residuals as colormap on the data'],...
'FontSize',10,...
'BackgroundColor',UserValues.Look.Back,...
'ForegroundColor',UserValues.Look.Fore,...
'Parent',handles.tab_corrections);
handles.plottype_dropdownmenu = uicontrol('Style','popupmenu',...
'Units','normalized',...
'Position',[0.5,0.86,0.25,0.03],...
'String',{'mesh','colormap'},...
'FontSize',10,...
'TooltipString',['<html>Choose the way that the weighted residuals are plotted in 2d plots.<br>'...
'mesh: plots the fit as a mesh in addition to the data<br>'...
'colormap: plots the weighted residuals as colormap on the data'],...
'Tag','plottype_dropdownmenu',...
'String',{'mesh','colormap'},...
'Value',1,...
'BackgroundColor',UserValues.Look.Control,...
'ForegroundColor',UserValues.Look.Fore,...
'Parent',handles.tab_corrections,...
'Callback',@update_corrections);
handles.CUDAKernel_checkbox = uicontrol('Style','checkbox',...
'Units','normalized',...
'Position',[0.05,0.83,0.45,0.03],...
'String','Use CUDAKernel',...
'Tag','CUDAKernel_checkbox',...
'TooltipString','Choose the implementation of CUDA between CUDAKernel or MEXfile.',...
'FontSize',10,...
'Value',UserValues.tcPDA.UseCUDAKernel,...
'BackgroundColor',UserValues.Look.Back,...
'ForegroundColor',UserValues.Look.Fore,...
'Parent',handles.tab_corrections,...
'Callback',@update_corrections);
% define P(N) axis
handles.axes_PN = axes('Parent',handles.tab_corrections,...
'Units','normalized',...
'Position',[0.12 0.06 0.8 0.3],...
'FontSize',10,...
'XColor',UserValues.Look.Fore,...
'YColor',UserValues.Look.Fore,...
'LineWidth', UserValues.Look.AxWidth,...
'Color',UserValues.Look.Axes,...
'GridAlpha',0.5,...
'XGrid','on',...
'nextplot','add',...
'YGrid','on',...
'Box','on');
handles.plots.PN = plot(0:1:100,normpdf(0:1:100,50,2),'LineWidth',2);
xlabel('Number of Photons');handles.axes_PN.XColor = UserValues.Look.Fore;
ylabel('Occurence');handles.axes_PN.YColor = UserValues.Look.Fore;
handles.axes_PN.Title.String = 'Photon count distribution';
handles.axes_PN.Title.Color = UserValues.Look.Fore;
%define fit table
str_dummy = {'<html><b>Amplitude','<html><b>R<sub>GR</sub>','<html><b>σ<sub>GR</sub>','<html><b>R<sub>BG</sub>', '<html><b>σ<sub>BG</sub>','<html><b>R<sub>BR</sub>','<html><b>σ<sub>BR</sub>',''};
Data = zeros(numel(str_dummy)-1,4);
Data([3,5,7],4) = 10;
handles.fit_table = uitable('Parent',handles.tab_fit_table,...
'Data',Data,...
'RowName','',...
'ColumnName',{'<html><b>Parameter','<html><b>Value','<html><b>F','<html><b>LB','<html><b>UB','<html><b>P','<html><b>Prior μ','<html><b>Prior σ'},...
'Units','normalized',...
'Position',[0 0 1 0.75],...
'FontSize',10,...
'ColumnWidth',{75,75,25,50,50,25,75,75},...
'ColumnEditable',[false,true,true,true,true,true,true,true],...
'ColumnFormat',{'char','numeric','logical','numeric','numeric','logical','numeric','numeric'},...
'ForegroundColor',UserValues.Look.TableFore,...
'BackgroundColor',[UserValues.Look.Table1;UserValues.Look.Table2],...
'CellEditCallback',@update_fit_params);
%%% add right click menu
handles.fit_table_menu = uicontextmenu;
handles.fit_table_menu_fix_amplitudes = uimenu(handles.fit_table_menu,'Label','Fix amplitudes','Checked','off','Callback',@fitpar_fix);
handles.fit_table_menu_fixGR = uimenu(handles.fit_table_menu,'Label','Fix GR parameters','Checked','off','Callback',@fitpar_fix);
handles.fit_table_menu_fixAllButCovar = uimenu(handles.fit_table_menu,'Label','Fix everything except covariances','Checked','off','Callback',@fitpar_fix);
handles.fit_table_menu_fixAllCovar = uimenu(handles.fit_table_menu,'Label','Fix all covariances','Checked','on','Callback',@fitpar_fix);
handles.fit_table.UIContextMenu = handles.fit_table_menu;
nbins = UserValues.tcPDA.nbins+1;
%make three tabs: 1D GR, 2D PB-PR and 3D all together
%enable only one tab during fitting (depending on what fit method is
%selected) but re-enable other tabs after fitting is complete
%define axes
handles.axes_1d = axes('Parent',handles.tab_1d,...
'Units','normalized',...
'Position',[0.075 0.1 0.9, 0.8],...
'Color',UserValues.Look.Axes,...
'XColor',UserValues.Look.Fore,...
'YColor',UserValues.Look.Fore,...
'GridAlpha',0.5,...
'FontSize',16,...
'LineWidth', UserValues.Look.AxWidth,...
'XGrid','on',...
'nextplot','add',...
'YGrid','on',...
'Box','off',...
'XLim',[0,1],...
'Tag','axes_1d',...
'TickDir','out');
handles.axes_1d.XLabel.String = 'PR_{GR}';
handles.axes_1d.XLabel.Color = UserValues.Look.Fore;
handles.axes_1d.YLabel.String = 'Occurence';
handles.axes_1d.YLabel.Color = UserValues.Look.Fore;
handles.axes_1d.XColor = UserValues.Look.Fore;
handles.axes_1d.YColor = UserValues.Look.Fore;
x_axis = linspace(0,1,nbins)+1/(nbins-1)/2;
x_axis_stairs = [x_axis - (x_axis(2)-x_axis(1))/2 1];
fit = sum(peaks(nbins),1).^2/nbins;
data = max(fit+sqrt(fit).*randn(1,nbins),0);
handles.plots.handle_1d_data = bar(handles.axes_1d,x_axis,data,'BarWidth',1,'EdgeColor','none','LineWidth',1,'FaceColor',[0.5 0.5 0.5]);
for i = 1:10
handles.plots.handles_H_res_1d_individual(i) = stairs(handles.axes_1d,x_axis_stairs,[fit fit(end)],'Color',handles.color_str{i},'Visible','off','LineWidth',2);
end
handles.plots.handle_1d_fit = stairs(handles.axes_1d,x_axis_stairs,[fit fit(end)],'Color','k','LineWidth',2);
handles.axes_1d_res = axes('Parent',handles.tab_1d,...
'Units','normalized',...
'Position',[0.075 0.875 0.9, 0.1],...
'XColor',UserValues.Look.Fore,...
'YColor',UserValues.Look.Fore,...
'FontSize',16,...
'LineWidth', UserValues.Look.AxWidth,...
'Box','off',...
'XGrid','on',...
'YGrid','on',...
'GridAlpha',0.5,...
'XTickLabel',[],...
'nextplot','add',...
'XLim',[0,1],...
'Tag','axes_1d_res',...
'TickDir','out');
handles.axes_1d_res.XLabel.String = '';
handles.axes_1d_res.YLabel.String = 'w_{res}';
handles.axes_1d_res.YLabel.Color = UserValues.Look.Fore;
dev = (data-fit)./sqrt(data); dev(dev == 0) = 0; dev(~isfinite(dev)) = 0; dev(end+1) = dev(end);
handles.plots.handle_1d_dev = stairs(handles.axes_1d_res,x_axis_stairs,dev,'Color','k','LineWidth',2);
linkaxes([handles.axes_1d,handles.axes_1d_res],'x');
handles.axes_2d = axes('Parent',handles.tab_2d,...
'Units','normalized',...
'Position',[0.075 0.1 0.9, 0.65],...
'XColor',UserValues.Look.Fore,...
'YColor',UserValues.Look.Fore,...
'ZColor',UserValues.Look.Fore,...
'FontSize',16,...
'LineWidth', UserValues.Look.AxWidth,...
'Box','off',...
'nextplot','add',...
'XLim',[0,1],...
'YLim',[0,1],...
'View',[45,45],...
'Tag','axes_2d');
handles.axes_2d.XLabel.String = 'PR_{BG}';
handles.axes_2d.XLabel.Color = UserValues.Look.Fore;
handles.axes_2d.YLabel.String = 'PR_{BR}';
handles.axes_2d.YLabel.Color = UserValues.Look.Fore;
handles.axes_2d.ZLabel.String = '#';
handles.axes_2d.ZLabel.Color = UserValues.Look.Fore;
fit2d = peaks(nbins).^2;
data2d = real(max(fit2d+sqrt(fit2d).*randn(nbins),0));
handles.plots.handle_2d_data = surf(handles.axes_2d,linspace(0,1,nbins),linspace(0,1,nbins),data2d,'FaceAlpha',0.6,'EdgeColor','none');
handles.plots.handle_2d_fit = surf(handles.axes_2d,linspace(0,1,nbins),linspace(0,1,nbins),fit2d,'FaceColor','none','EdgeColor',[1 1 1]);
for i = 1:10
handles.plots.handles_H_res_2d_individual(i) = surf(handles.axes_2d,linspace(0,1,nbins),linspace(0,1,nbins),fit2d,'FaceColor','none','EdgeColor',handles.color_str{i},'Visible','off');
end
handles.axes_2d_res = axes('Parent',handles.tab_2d,...
'Units','normalized',...
'Position',[0.075 0.775 0.9 0.2],...
'FontSize',16,...
'LineWidth', UserValues.Look.AxWidth,...
'XColor',UserValues.Look.Fore,...
'YColor',UserValues.Look.Fore,...
'ZColor',UserValues.Look.Fore,...
'Box','off',...
'nextplot','add',...
'XLim',[0,1],...
'YLim',[0,1],...
'View',[45,25],...
'Tag','axes_2d_res');
handles.axes_2d_res.ZLabel.String = 'w_{res}';
handles.axes_2d_res.ZLabel.Color = UserValues.Look.Fore;
dev2d = (data2d-fit2d)./sqrt(data2d);dev2d(dev2d==0) = 0;
handles.plots.handle_2d_dev = surf(handles.axes_2d_res,linspace(0,1,nbins),linspace(0,1,nbins),dev2d,'FaceAlpha',1,'EdgeColor','k');
%link angle
handles.axes_link_2d = linkprop([handles.axes_2d, handles.axes_2d_res],'CameraPosition');
%%% 3d plot tab
[X,Y,Z] = meshgrid(linspace(0,1,nbins),linspace(0,1,nbins),linspace(0,1,nbins));
fit3d = mvnpdf([X(:),Y(:),Z(:)],[0.25,0.75,0.5],0.05^2*eye(3)) +...
0.5*mvnpdf([X(:),Y(:),Z(:)],[0.5,0.3,0.6],0.04^2*eye(3)) +...
0.75*mvnpdf([X(:),Y(:),Z(:)],[0.75,0.5,0.25],0.045^2*eye(3));
fit3d = 1E5*reshape(fit3d,[nbins,nbins,nbins])./sum(fit3d);
data3d = fit3d + sqrt(fit3d).*randn(nbins,nbins,nbins); %fit3d(fit3d < 0) = 0;
handles.axes_3d = tight_subplot_tab(2,3,[0.1 0.05],[0.08,0.05],[0.05,0.05],handles.tab_3d);
for i = 1:numel(handles.axes_3d)
ax = handle(handles.axes_3d(i));
set(ax,'XColor',UserValues.Look.Fore);
set(ax,'YColor',UserValues.Look.Fore);
set(ax,'LineWidth',UserValues.Look.AxWidth);
set(ax,'Box','off');
ax.XLim = [0,1];
ax.FontSize = 12;
ax.XLabel.FontSize = 16;
ax.YLabel.FontSize = 16;
ax.XLabel.Color = UserValues.Look.Fore;
ax.YLabel.Color = UserValues.Look.Fore;
switch i
case {1,2,3} %%% specific for 2d plots
set(ax,'ZColor',UserValues.Look.Fore);
ax.ZLabel.FontSize = 16;
ax.View = [45,25];
ax.ZLabel.Color = UserValues.Look.Fore;
end
%%% create axis labels and plots
switch i
case 1
ax.XLabel.String = 'PR_{BR}';
ax.YLabel.String = 'PR_{BG}';
handles.plots.handle_3d_data_bg_br = surf(ax,linspace(0,1,nbins),linspace(0,1,nbins),squeeze(sum(data3d,3)),'EdgeColor','none','FaceAlpha',0.6);
for j = 1:10
handles.plots.handles_H_res_3d_individual_bg_br(j) = surf(ax,linspace(0,1,nbins),linspace(0,1,nbins),squeeze(sum(fit3d,3)),'FaceColor','none','EdgeColor',handles.color_str{j},'Visible','off');
end
handles.plots.handle_3d_fit_bg_br = surf(ax,linspace(0,1,nbins),linspace(0,1,nbins),squeeze(sum(fit3d,3)),'FaceColor','none','EdgeColor',[1 1 1]);
ax.ZLim(1) = 0;
case 2
ax.XLabel.String = 'PR_{GR}';
ax.YLabel.String = 'PR_{BG}';
handles.plots.handle_3d_data_bg_gr = surf(ax,linspace(0,1,nbins),linspace(0,1,nbins),squeeze(sum(data3d,2)),'EdgeColor','none','FaceAlpha',0.6);
for j = 1:10
handles.plots.handles_H_res_3d_individual_bg_gr(j) = surf(ax,linspace(0,1,nbins),linspace(0,1,nbins),squeeze(sum(fit3d,2)),'FaceColor','none','EdgeColor',handles.color_str{j},'Visible','off');
end
handles.plots.handle_3d_fit_bg_gr = surf(ax,linspace(0,1,nbins),linspace(0,1,nbins),squeeze(sum(fit3d,2)),'FaceColor','none','EdgeColor',[1 1 1]);
ax.ZLim(1) = 0;
case 3
ax.XLabel.String = 'PR_{GR}';
ax.YLabel.String = 'PR_{BR}';
handles.plots.handle_3d_data_br_gr = surf(ax,linspace(0,1,nbins),linspace(0,1,nbins),squeeze(sum(data3d,1)),'EdgeColor','none','FaceAlpha',0.6);
for j = 1:10
handles.plots.handles_H_res_3d_individual_br_gr(j) = surf(ax,linspace(0,1,nbins),linspace(0,1,nbins),squeeze(sum(fit3d,1)),'FaceColor','none','EdgeColor',handles.color_str{j},'Visible','off');
end
handles.plots.handle_3d_fit_br_gr = surf(ax,linspace(0,1,nbins),linspace(0,1,nbins),squeeze(sum(fit3d,1)),'FaceColor','none','EdgeColor',[1 1 1]);
ax.ZLim(1) = 0;
case 4
ax.XLabel.String = 'PR_{BG}';
handles.plots.handle_3d_data_bg = bar(ax,x_axis,squeeze(sum(sum(data3d,2),3)),'BarWidth',1,'FaceColor',[0.5 0.5 0.5],'EdgeColor','none');
fit = squeeze(sum(sum(fit3d,2),3));
for j = 1:10
handles.plots.handles_H_res_3d_individual_bg(j) = stairs(ax,x_axis_stairs,[fit; fit(end)],'Color',handles.color_str{j},'LineWidth',2,'Visible','off');
end
handles.plots.handle_3d_fit_bg = stairs(ax,x_axis_stairs,[fit; fit(end)],'Color','k','LineWidth',2);
ax.YLim(1) = 0;
case 5
ax.XLabel.String = 'PR_{BR}';
handles.plots.handle_3d_data_br = bar(ax,x_axis,squeeze(sum(sum(data3d,1),3)),'BarWidth',1,'FaceColor',[0.5 0.5 0.5],'EdgeColor','none');
fit = squeeze(sum(sum(fit3d,1),3));
for j = 1:10
handles.plots.handles_H_res_3d_individual_br(j) = stairs(ax,x_axis_stairs,[fit fit(end)],'Color',handles.color_str{j},'LineWidth',2,'Visible','off');
end
handles.plots.handle_3d_fit_br = stairs(ax,x_axis_stairs,[fit fit(end)],'Color','k','LineWidth',2);
ax.YLim(1) = 0;
case 6
ax.XLabel.String = 'PR_{GR}';
handles.plots.handle_3d_data_gr = bar(ax,x_axis,squeeze(sum(sum(data3d,1),2)),'BarWidth',1,'FaceColor',[0.5 0.5 0.5],'EdgeColor','none');
fit = squeeze(sum(sum(fit3d,1),2));
for j = 1:10
handles.plots.handles_H_res_3d_individual_gr(j) = stairs(ax,x_axis_stairs,[fit; fit(end)],'Color',handles.color_str{j},'LineWidth',2,'Visible','off');
end
handles.plots.handle_3d_fit_gr = stairs(ax,x_axis_stairs,[fit; fit(end)],'Color','k','LineWidth',2);
ax.YLim(1) = 0;
end
end
%chi2 text
handles.text_chi2 = uicontrol('Parent',handles.tab_fit_table,...
'Units','normalized',...
'Position',[0.65 0.76 0.35 0.03],...
'Style','text',...
'HorizontalAlignment','center',...
'String','chi2 = ...',...
'BackgroundColor',UserValues.Look.Back,...
'ForegroundColor',UserValues.Look.Fore,...
'FontSize',10,...
'Tag','text_chi2');
%BIC text
handles.BIC_text = uicontrol('Parent',handles.tab_fit_table,...
'Units','normalized',...
'Position',[0 0.76 0.65 0.03],...
'Style','text',...
'HorizontalAlignment','center',...
'String','',...
'BackgroundColor',UserValues.Look.Back,...
'ForegroundColor',UserValues.Look.Fore,...
'FontSize',10,...
'Tag','BIC_text');
%define buttons
handles.button_fit = uicontrol('Parent',handles.tab_fit_table,...
'Style','pushbutton',...
'Tag','button_fit',...
'Units','normalized',...
'Position',[0.05 0.8 0.4 0.03],...
'String','Fit',...
'BackgroundColor',UserValues.Look.Control,...
'ForegroundColor',UserValues.Look.Fore,...
'FontSize',10,...
'Callback',@pushbutton_fit);
handles.button_view_curve = uicontrol('Parent',handles.tab_fit_table,...
'Style','pushbutton',...
'Tag','button_view_curve',...
'Units','normalized',...
'Position',[0.55 0.8 0.4 0.03],...
'String','View Curve',...
'BackgroundColor',UserValues.Look.Control,...
'ForegroundColor',UserValues.Look.Fore,...
'FontSize',10,...
'Callback',@pushbutton_view_curve);
handles.button_save_fitstate = uicontrol('Parent',handles.tab_fit_table,...
'Style','pushbutton',...
'Tag','button_save_fitstate',...
'Units','normalized',...
'Position',[0.55 0.88 0.4 0.03],...
'FontSize',10,...
'BackgroundColor',UserValues.Look.Control,...
'ForegroundColor',UserValues.Look.Fore,...
'String','Save Fit State',...
'Callback',@pushbutton_save_fitstate);
handles.button_save_menu = uicontextmenu;
handles.button_save_fitstate_external = uimenu('Parent',handles.button_save_menu,...
'Tag','button_load_fitstate',...
'Label','Save Fit State in separate file',...
'Callback',@pushbutton_save_fitstate);
handles.button_load_fitstate = uimenu('Parent',handles.button_save_menu,...
'Tag','button_load_fitstate',...
'Label','Load Fit State from separate file',...
'Callback',@pushbutton_load_fitstate);
handles.button_save_fitstate.UIContextMenu = handles.button_save_menu;
handles.button_export_figure = uicontrol('Parent',handles.tab_fit_table,...
'Style','pushbutton',...
'Tag','button_load_fitstate',...
'Units','normalized',...
'FontSize',10,...
'BackgroundColor',UserValues.Look.Control,...
'ForegroundColor',UserValues.Look.Fore,...
'Position',[0.55 0.84 0.4 0.03],...
'String','Save Figure',...
'Callback',@pushbutton_export_figure);
handles.checkbox_stochasticlabeling = uicontrol('Parent',handles.tab_fit_table,...
'Style','checkbox',...
'Tag','checkbox_stochasticlabeling',...
'Units','normalized',...
'Position',[0.025 0.88 0.275 0.03],...
'String','Stochastic labeling?',...
'BackgroundColor',UserValues.Look.Back,...
'ForegroundColor',UserValues.Look.Fore,...
'FontSize',10,...
'Value',UserValues.tcPDA.use_stochastic_labeling,...
'Callback',@update_corrections);
handles.edit_stochasticlabeling = uicontrol('Parent',handles.tab_fit_table,...
'Style','edit',...
'Tag','edit_stochasticlabeling',...
'Units','normalized',...
'Position',[0.30 0.88 0.14 0.03],...
'BackgroundColor',UserValues.Look.Control,...
'ForegroundColor',UserValues.Look.Fore,...
'FontSize',10,...
'String',num2str(UserValues.tcPDA.stochastic_labeling_fraction),...
'Callback',@update_corrections);
handles.checkbox_fix_stochasticlabeling = uicontrol('Parent',handles.tab_fit_table,...
'Style','checkbox',...
'Tag','checkbox_fix_stochasticlabeling',...
'Units','normalized',...
'Position',[0.44 0.88 0.1 0.03],...
'String','F?',...
'BackgroundColor',UserValues.Look.Back,...
'ForegroundColor',UserValues.Look.Fore,...
'FontSize',10,...
'Value',UserValues.tcPDA.fix_stochasticlabeling,...
'Callback',@update_corrections);
handles.MLE_checkbox = uicontrol('Style','checkbox',...
'Units','normalized',...
'Position',[0.025,0.84,0.23,0.03],...
'String','Use MLE',...
'Tag','MLE_checkbox',...
'FontSize',10,...
'BackgroundColor',UserValues.Look.Back,...
'ForegroundColor',UserValues.Look.Fore,...
'Parent',handles.tab_fit_table,...
'Value',UserValues.tcPDA.use_MLE,...
'Callback',@update_corrections);
handles.live_plot_update_checkbox = uicontrol('Style','checkbox',...
'Units','normalized',...
'Position',[0.2325,0.84,0.3,0.03],...
'String','Live Plot',...
'Tag','live_plot_update_checkbox',...
'FontSize',10,...
'BackgroundColor',UserValues.Look.Back,...
'ForegroundColor',UserValues.Look.Fore,...
'Parent',handles.tab_fit_table,...
'Value',1,...
'Callback',@update_corrections);
handles.FitMethod_popupmenu = uicontrol('Style','popupmenu',...
'Units','normalized',...
'Position',[0.25,0.96,0.3,0.03],...
'String',{'Simplex','Pattern Search','Gradient-based','Gradient-based (global)','Surrogate Optimization','Genetic Algorithm','Simulated Annealing','Particle Swarm'},...
'Tag','FitMethod_popupmenu',...
'Parent',handles.tab_fit_table,...
'FontSize',10,...
'Callback',[]);
handles.FitMethodText = uicontrol('Style','text',...
'Units','normalized',...
'Position',[0.025,0.96,0.225,0.03],...
'String','Fit Method:',...
'Tag','FitMethod_text',...
'BackgroundColor',UserValues.Look.Back,...
'ForegroundColor',UserValues.Look.Fore,...
'FontSize',10,...
'HorizontalAlignment','left',...
'Parent',handles.tab_fit_table);
handles.min_n_edit = uicontrol('Style','edit',...
'Parent',handles.tab_fit_table,...
'Units','normalized',...
'Position',[0.8 0.96 0.15 0.03],...
'String','0',...
'BackgroundColor',UserValues.Look.Control,...
'ForegroundColor',UserValues.Look.Fore,...
'FontSize',10,...
'Tag','min_n_edit',...
'Callback',@Cut_Data);
handles.min_n_text = uicontrol('Style','text',...
'Parent',handles.tab_fit_table,...
'Units','normalized',...
'BackgroundColor',UserValues.Look.Back,...
'ForegroundColor',UserValues.Look.Fore,...
'FontSize',10,...
'Position',[0.65 0.96 0.15 0.03],...
'HorizontalAlignment','left',...
'String','Min N:',...
'Tag','min_n_text');
handles.max_n_edit = uicontrol('Style','edit',...
'Parent',handles.tab_fit_table,...
'Units','normalized',...
'Position',[0.8 0.92 0.15 0.03],...
'String','Inf',...
'BackgroundColor',UserValues.Look.Control,...
'ForegroundColor',UserValues.Look.Fore,...
'FontSize',10,...
'Tag','max_n_edit',...
'Callback',@Cut_Data);
handles.max_n_text = uicontrol('Style','text',...
'Parent',handles.tab_fit_table,...
'Units','normalized',...
'Position',[0.65 0.92 0.15 0.03],...
'BackgroundColor',UserValues.Look.Back,...
'ForegroundColor',UserValues.Look.Fore,...
'FontSize',10,...
'HorizontalAlignment','left',...
'String','Max N:',...
'Tag','max_n_text');
handles.popupmenu_ngauss = uicontrol('Parent',handles.tab_fit_table,...
'Style','popupmenu',...
'Tag','popupmenu_ngauss',...
'Units','normalized',...
'FontSize',10,...
'Position',[0.25 0.92 0.3 0.03],...
'String',{'1','2','3','4','5'},...
'Callback',@popupmenu_ngauss_callback);
handles.ngauss_text = uicontrol('Style','text',...
'Units','normalized',...
'Position',[0.025,0.92,0.225,0.03],...
'String','# Species:',...
'Tag','ngauss_text',...
'BackgroundColor',UserValues.Look.Back,...
'ForegroundColor',UserValues.Look.Fore,...
'FontSize',10,...
'HorizontalAlignment','left',...
'Parent',handles.tab_fit_table);
%%% Bayesian Tab
handles.bayesian_settings_panel = uibuttongroup(...
'BackgroundColor',UserValues.Look.Back,...
'Parent',handles.tab_bayesian,...
'Units','normalized',...
'Position',[0 0.85 1 0.15],...
'Tag','bayesian_settings_panel');
handles.bayesian_plot_panel = uibuttongroup(...
'BackgroundColor',UserValues.Look.Back,...
'Parent',handles.tab_bayesian,...
'Units','normalized',...
'Position',[0 0 1 0.85],...
'Tag','bayesian_plot_panel');
handles.draw_samples_button = uicontrol('Style','pushbutton',...
'Parent',handles.bayesian_settings_panel,...
'Units','normalized',...
'Position',[0.02 0.70 0.2 0.2],...
'String','Draw Samples',...
'Tag','draw_samples_button',...
'BackgroundColor',UserValues.Look.Control,...
'ForegroundColor',UserValues.Look.Fore,...
'Callback',@mcmc_draw_samples);
handles.save_mcmc_button = uicontrol('Style','pushbutton',...
'Parent',handles.bayesian_settings_panel,...
'Units','normalized',...
'Position',[0.4 0.70 0.2 0.2],...
'String','Save samples',...
'Tag','save_mcmc_button',...
'BackgroundColor',UserValues.Look.Control,...
'ForegroundColor',UserValues.Look.Fore,...
'Callback',@MCMC_summary);
handles.mcmc_append = uicontrol('Style','checkbox',...
'Parent',handles.bayesian_settings_panel,...
'Units','normalized',...
'Position',[0.23 0.70 0.15 0.2],...
'String','Append samples',...
'Tag','mcmc_append',...
'Value',0,...
'BackgroundColor',UserValues.Look.Back,...
'ForegroundColor',UserValues.Look.Fore);
handles.n_samples_edit = uicontrol('Style','edit',...
'Parent',handles.bayesian_settings_panel,...
'Units','normalized',...
'Position',[0.22 0.45 0.125 0.2],...
'String',num2str(UserValues.tcPDA.mcmc_samples),...
'Callback',@update_corrections,...
'BackgroundColor',UserValues.Look.Control,...
'ForegroundColor',UserValues.Look.Fore,...
'FontSize',10,...
'Tag','n_samples_button');
handles.n_samples_text = uicontrol('Style','text',...
'Parent',handles.bayesian_settings_panel,...
'Units','normalized',...
'Position',[0.02 0.45 0.2 0.2],...
'String','Number of samples:',...
'BackgroundColor',UserValues.Look.Back,...
'ForegroundColor',UserValues.Look.Fore,...
'FontSize',10,...
'Tag','n_samples_text');
handles.mcmc_spacing_edit = uicontrol('Style','edit',...
'Parent',handles.bayesian_settings_panel,...
'Units','normalized',...
'Position',[0.22 0.25 0.125 0.2],...
'String',num2str(UserValues.tcPDA.mcmc_spacing),...
'BackgroundColor',UserValues.Look.Control,...
'ForegroundColor',UserValues.Look.Fore,...
'FontSize',10,...
'Callback',@update_corrections,...
'Tag','mcmc_spacing_edit');
handles.mcmc_spacing_text = uicontrol('Style','text',...
'Parent',handles.bayesian_settings_panel,...
'Units','normalized',...
'Position',[0.02 0.25 0.2 0.2],...
'String','Spacing between samples:',...
'BackgroundColor',UserValues.Look.Back,...
'ForegroundColor',UserValues.Look.Fore,...
'FontSize',10,...
'Tag','mcmc_spacing_text');
handles.mcmc_method_text = uicontrol('Style','text',...
'Parent',handles.bayesian_settings_panel,...
'Units','normalized',...
'Position',[0.02 0.05 0.2 0.2],...
'String','Sampling method:',...
'BackgroundColor',UserValues.Look.Back,...
'ForegroundColor',UserValues.Look.Fore,...
'FontSize',10,...
'Tag','n_samples_text');
handles.mcmc_method = uicontrol('Style','popupmenu',...
'Parent',handles.bayesian_settings_panel,...
'Units','normalized',...
'Position',[0.22 0.05 0.125 0.2],...
'String',{'MH','MHWG'},...
'Value',1,...
'FontSize',10,...
'Tag','mcmc_method');
handles.sigma_A_edit = uicontrol('Style','edit',...
'Parent',handles.bayesian_settings_panel,...
'Units','normalized',...
'Position',[0.85 0.70 0.125 0.2],...
'String',num2str(UserValues.tcPDA.mcmc_wA),...
'Callback',@update_corrections,...
'BackgroundColor',UserValues.Look.Control,...
'ForegroundColor',UserValues.Look.Fore,...
'FontSize',10,...
'Tag','sigma_A_edit');
handles.sigma_A_text = uicontrol('Style','text',...
'Parent',handles.bayesian_settings_panel,...
'Units','normalized',...
'Position',[0.65 0.7 0.2 0.2],...
'String','Sampling width for Amplitudes:',...
'BackgroundColor',UserValues.Look.Back,...
'ForegroundColor',UserValues.Look.Fore,...
'FontSize',10,...
'HorizontalAlignment','left',...
'Tag','sigma_A_text');
handles.sigma_R_edit = uicontrol('Style','edit',...
'Parent',handles.bayesian_settings_panel,...
'Units','normalized',...
'BackgroundColor',UserValues.Look.Control,...
'ForegroundColor',UserValues.Look.Fore,...
'FontSize',10,...
'Position',[0.85 0.45 0.125 0.2],...
'String',num2str(UserValues.tcPDA.mcmc_wR),...
'Callback',@update_corrections,...
'Tag','sigma_R_edit');
handles.sigma_R_text = uicontrol('Style','text',...
'Parent',handles.bayesian_settings_panel,...
'Units','normalized',...
'BackgroundColor',UserValues.Look.Back,...
'ForegroundColor',UserValues.Look.Fore,...
'FontSize',10,...
'Position',[0.65 0.45 0.2 0.2],...
'String','Sampling width for Distances:',...
'HorizontalAlignment','left',...
'Tag','sigma_R_text');
handles.sigma_s_edit = uicontrol('Style','edit',...
'Parent',handles.bayesian_settings_panel,...
'Units','normalized',...
'Position',[0.85 0.2 0.125 0.2],...
'String',num2str(UserValues.tcPDA.mcmc_wS),...
'Callback',@update_corrections,...
'BackgroundColor',UserValues.Look.Control,...
'ForegroundColor',UserValues.Look.Fore,...
'FontSize',10,...
'Tag','sigma_s_edit');
handles.sigma_s_text = uicontrol('Style','text',...
'Parent',handles.bayesian_settings_panel,...
'Units','normalized',...
'BackgroundColor',UserValues.Look.Back,...
'ForegroundColor',UserValues.Look.Fore,...
'HorizontalAlignment','left',...
'FontSize',10,...
'Position',[0.65 0.2 0.2 0.2],...
'String','Sampling width for Widths:',...
'Tag','sigma_s_text');
handles.Brightness_Correction_Toggle = uicontrol('Style','checkbox',...
'Units','normalized',...
'Position',[0.55,0.83,0.45,0.03],...
'String','Use Brightness Correction',...
'Tag','Brightness_Correction_Toggle',...
'Parent',handles.tab_corrections,...
'FontSize',10,...
'BackgroundColor',UserValues.Look.Back,...
'ForegroundColor',UserValues.Look.Fore,...
'Enable','on',...
'Visible','on',...
'Callback',[]);
%%% 1d pda data tab
handles.panel_2cPDAData = uibuttongroup(...
'BackgroundColor',UserValues.Look.Back,...
'Parent',handles.tab_PDAData,...
'Units','normalized',...
'Position',[0 0 1 1],...
'Tag','panel_2cPDAData');
handles.add_2cPDAData = uicontrol('Style','pushbutton',...
'Parent',handles.panel_2cPDAData,...
'Units','normalized',...
'Position',[0.05 0.9 0.25 0.05],...
'String','Load 2C PDA data',...
'Tag','add_2cPDAData',...
'BackgroundColor',UserValues.Look.Control,...
'ForegroundColor',UserValues.Look.Fore,...
'Callback',@add_2cPDAData);
cnames = {'Use','File','Dist','<html>γ</html>','ct','de','R0','BG don','BG acc','timebin','Del'};
cformat = {'logical','char',{'GR','BG','BR'},'numeric','numeric','numeric','numeric','numeric','numeric','numeric','logical'};
cedit = [true,false,true,true,true,true,true,true,true,false,true];
data = {true,'test','GR',1,0,0,0,0,1,false};
cwidth = {40,'auto',60,40,40,40,50,50,50,40};
handles.table_2cPDAData = uitable(...
'Parent',handles.panel_2cPDAData,...
'Units','normalized',...
'Position',[0 0 1 0.8],...
'RowName',[],...
'ColumnName',cnames,...
'ColumnEditable',cedit,...
'ColumnFormat',cformat,...
'CellEditCallback',@table_2cPDAData_callback,...
'ColumnWidth',cwidth,...
'Data',data);
handles.use_2cPDAData_checkbox = uicontrol('Style','checkbox',...
'Parent',handles.panel_2cPDAData,...
'Units','normalized',...
'Position',[0.05 0.85 0.9 0.05],...
'String','Use 2C PDA data (global analysis)',...
'Tag','use_2cPDAData_checkbox',...
'BackgroundColor',UserValues.Look.Back,...
'ForegroundColor',UserValues.Look.Fore,...
'Value',0,...
'Callback',[]);
handles.norm_likelihood_checkbox = uicontrol('Style','checkbox',...
'Parent',handles.panel_2cPDAData,...
'Units','normalized',...
'Position',[0.05 0.8 0.9 0.05],...
'String','Normalize likelihood for global analysis',...
'ToolTipString','Uses geometric mean of the likelihood for each dataset.',...
'Tag','norm_likelihood_checkbox',...
'BackgroundColor',UserValues.Look.Back,...
'ForegroundColor',UserValues.Look.Fore,...
'Value',0,...
'Callback',[]);
%%% store guidata
guidata(handles.Figure,handles);
%set table values
popupmenu_ngauss_callback(handles.popupmenu_ngauss,0);