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ChangeLog
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AeroChem ChangeLog
2021-12-20 <[email protected]> Feature added to v1.7.0
* Bug fix for HEMCO run phases
* Bug fix in Surface Area Density calculation in GMI and StratChem
NOTE: As of August 2021, this log file reflects changes to the CVS repository.
The majority of comments are about code in the CHEMISTRY GridComp, but
occasionally there are notes about other sections of the GEOS codebase.
2021-08-06 <[email protected]> Tag: Icarus-3_2_p9_MEM_25
* Lightning flashFactor now has resolution-dependent values, and
distinguishes between CTM, Free-Run or REPLAY mode
2021-07-27 <[email protected]> Tag: Icarus-3_2_p9_MEM_24-r1 (zero diff w/ 24)
* Took out LFR export from MOIST
* Refactored HEMCO flashrate, eliminating extraeous fields
2021-03-29 <[email protected]> Tag: Icarus-3_2_p9_MEM_24
* Added ECCOH functionality (CO/CH4/OH), and isotopologues of CH4
Subsequently pushed the tag:
2021-03-30 More information when HCl or HNO3COND is trapped; fixed a memory leak
2021-04-01 Added good DEBUG print statement in MAPL, and bugfix in fv_tracer2d.F90
2021-04-12 Added FeedBack_QV option (true in CCM, false in CTM)
2021-05-07 Fixes to allow Vanessa to compile (bash, hermes)
2021-03-10 <[email protected]> Tag: Icarus-3_2_p9_MEM_23
* Emissions and boundary conditions as in REF-D1; files are now in GMAO SHAREd space
Subsequently pushed the tag:
2021-03-19 Fixed compilation at NAS
2021-04-01 Added good DEBUG print statement in MAPL, and bugfix in fv_tracer2d.F90
Special tag for REF-D1:
2020-12-30 <[email protected]> Tag: Icarus-3_2_p9_MEM_22x
* Allow GOCART_DT /= HEARTBEAT, for experiment REF-D1
* Use global mean values for CO2, specified for CCMI REF-D1
Subsequently pushed the tag:
2021-01-04 Activate HEMCO restart files if using MEGAN via HEMCO
2021-01-11 Changed MOIST_flashFactor to 2.0 based on latest tests
2021-01-22 Added OVP diagnostics and other bells and whistles
2021-02-10 Fine-tuned some dust parameters
2021-04-01 <[email protected]> Tag: Icarus-3_2_p9_MEM_22-r1
* Added good DEBUG print statement in MAPL, and bugfix in fv_tracer2d.F90
(This was done to synchronize with the CTM codebase)
2020-12-29 <[email protected]> Tag: Icarus-3_2_p9_MEM_22
* DryDep bug fix, and added SNOW to LWI' $FILE
Subsequently pushed the tag:
2021-01-04 Activate HEMCO restart files if using MEGAN via HEMCO
2021-01-11 Changed MOIST_flashFactor to 2.0 based on latest tests
2021-02-10 Fine-tuned some dust parameters
2020-12-28 <[email protected]> Tag: Icarus-3_2_p9_MEM_21-r1
* Fixed bug, changing DUST scavenging efficiency in GOCART convection
2020-12-09 <[email protected]> Tag: Icarus-3_2_p9_MEM_21
* Modified aerosol treatment according to Hongyu Liu
2020-11-27 <[email protected]> Tag: Icarus-3_2_p9_MEM_21-ALPHA-r1
* Slight improvement of stOX (and new diagnostics); better units for GMIH2O
2020-11-18 <[email protected]> Tag: Icarus-3_2_p9_MEM_21-ALPHA
* Better distinction between VMR wrt MOIST (internal fields) and wrt DRY (for emissions) in TR
2020-03-06 <[email protected]> Tag: Icarus-3_2_p9_MEM_20-SLES12
* Modified g5_modules & other files
Subsequently pushed the tag:
2020-04-10 Tweaked GlobalSum in GCC code, to use a MAPL Reduce routine.
2020-02-03 <[email protected]> Tag: Icarus-3_2_p9_MEM_20 (also re-tagged as Icarus-3_2_p9_MEM_20-SLES11)
* Added CloudJ photolysis option in GMI (Steve Steenrod)
* In GMI, changed from 5 RH bins (for aerosols) to 7 bins.
2019-12-17 <[email protected]> Tag: Icarus-3_2_p9_MEM_19
* Added Steve's virtually zero-diff edits to FJ6.5
* Added trap for Cly too small, in family xport
2019-10-09 <[email protected]> Tag: Icarus-3_2_p9_MEM_18
* In GMI, new values for ice and nat aerosols (surface area density)
* Also use CMIP6 files for surface area density
* GMI option to use HEMCO for MEGAN emissions
* In HEMCO, added a GMI instance
* In HEMCO GOCART instance added suffix to MEGAN emissions for symmetry
* In GOCART now disallow GOCART_DT /= HEARTBEAT_DT
2019-10-09 <[email protected]> Tag: Icarus-3_2_p9_MEM_17
* Added RAS_NO_NEG option for guarding against negative tracer values
2019-08-20 <[email protected]> Tag: Icarus-3_2_p9_MEM_16
* Added Jules' ship emissions option in GMI
2019-07-16 <[email protected]> Tag: Icarus-3_2_p9_MEM_15
* Added Elliot's new aoa_bl tracer in TR
# this entry unique to GIT copy:
2019-06-21 <[email protected]> Tag: Icarus-3_2_p9_MEM_15
* In bundles, chem tracers now have grid comp prefix, to
eliminate naming collisions
2019-05-05 <[email protected]> Tag: Icarus-3_2_p9_MEM_14
* Tendencies are now computed using the Bundle approach from Elliot
2018-11-29 <[email protected]> Tag: Icarus-3_2_p9_MEM_MERGE_8
* NI can now use HNO3 from GMI, and export changes back too
2018-11-02 <[email protected]> Tag: Icarus-3_2_p9_MEM_MERGE_7a
* Increased GEOS-Chem wet removal.
* Now GEOS-Chem allows SZA through 98 degrees.
* Made Bry&Cly family transport more robust.
2018-10-17 <[email protected]> Tag: Icarus-3_2_p9_MEM_MERGE_7
* Corrected the TH and T imports to chem (when SYNCTQ).
2018-10-10 <[email protected]> Tag: Icarus-3_2_p9_MEM_MERGE_6
* Support 132 levels in GMI
* Clarified which GOCART and TR import rst fields to skip
2018-09-12 <[email protected]> Tag: Icarus-3_2_p9_MEM_MERGE_5
* Integrated GEOS-Chem v1102f into the Merged CHEM tag
2018-08-31 <[email protected]> Tag: Icarus-3_2_p9_MEM_MERGE_4
* Added wet/dry distinction for HSTAR in GMI
* Added family transport for Bry and Cly in GMI
2018-08-28 <[email protected]> Tag: Icarus-3_2_p9_MEM_MERGE_3-r2
* Option to taper QV above tropopause during Replay
2018-07-17 <[email protected]> Tag: Icarus-3_2_p9_MEM_MERGE_3-r1
* In StratChem turn off surface fluxes for CFC-11, etc by default
* Renamed StratChem SF6 to SF6B in several Chem Registries
2018-07-06 <[email protected]> Tag: Icarus-3_2_p9_MEM_MERGE_3
* In StratChem use JPL 2015 rates, and added eccentricity
* In StratChem renamed SF6 to SF6B, to eliminate naming conflict
* In StratChem made a few Br species unfriendly to MOIST since they
are passed to the ChemShared convection routine.
2018-02-27 <[email protected]> Tag: Icarus-1_0_p2_MEM_SC-r3
* Fixed definition of AIRDENS_DRY and renamed it AIRDENS_DRYP. (B. Weir)
* Corrected eqn of numDens in StratChem.
* Comment out parameterized scavenging of HBr in StratChem, now
handled in convection and wet-removal routines in ChemShared.
2017-05-03 <[email protected]>, Tag: Icarus-1_0_p1
[This functionality was merged into Icarus-3_2_p9_MEM_24 in March 2021]
* Added OH_Para_GridComp under GOCART, and connectivity between CO/CH4/OH
* CH4: Added C13 isotope option, and related exports
2017-01-06 <[email protected]> Tag: Heracles-5_3_p3_JEN_GMI-r1
* Added Mike Manyin's rc files for CCMI_REF-C1 and CCMI_REF-C2 scenarios
to BC, DU, OC, and SU, including updates to the respective GNUmakefiles.
* CFC_GridComp.rc now defaults to SC.J_20_12_79_72_200_38.nc4, which updates
photorates to JPL 2010, which are also in the 132-layer version of the file.
2016-08-08 <[email protected]> Tag: AeroChem-Heracles-5_3-b2
* Added ESMF state based aerosol-cloud coupling interface (AERO_ACI)
* Renamed the loaded in CHEM G.C. SetServices methods.
* Renamed GEOSAchem G.C. to Achem G.C.; Applied 'ACHEM::' namespace
construct to the names of fields from the internal state.
* Updated the core aerosol microphysics with configuration for MAM4;
applied the SOA patch from Zheng.
* Upstream edits from Heracles-UNSTABLE
2016-07-20 <[email protected]> Tag: AeroChem-Heracles-5_3-b1
* Added HEMCO (merged Heracles-5_3 with Aerochem-Heracles-5_2-b3-HEMCO)
* Upstream edits from Heracles-UNSTABLE
2016-06-17 <[email protected]> Tag: AeroChem-Heracles-5_2-b9
* Speedup fixes for ConvectionMod.F90 and NI_GridCompMod.F90; these
edits are zero-diff and are based on Matt's mat-H53-NISpeed tag.
2016-06-03 <[email protected]> Tag: AeroChem-Heracles-5_2-b8
* Updated cloudnew.F90 GEOS_MoistGridComp.F90 to Heracles-5_2;
this effecively makes this tag to be based on Heracles-5_2;
next GEOS_MoistGridComp.F90 was updated to Andrea's 1-moment mods
related to the conv/large scale partitiong (tag b_AMM_H521MOPS_move2d)
2016-05-27 <[email protected]> Tag: AeroChem-Heracles-5_2-b7
* GOCART: Initially this tag had the edits related to the modified
temperature dependence of the wet removal efficiency factors that
used a linear ramp rather than a step function. The edits were in
SU_GridCompMod.F90, ConvectionMod.F90 and WetRemovalMod.F90
(see asd-wet_dep-temperature_ramp tag). However, the results from
a test run showed noticeable changes in the AOD, so these edits
were reverted in CVS and in this tag until another more 'cleaner'
test is done to assess the impact of these edits.
* Added new GOCART exports - total reconstructed PM and PM2.5.
* Upstream edits from Heracles-UNSTABLE.
2016-05-27 <[email protected]> Tag: AeroChem-Heracles-5_2
* Based on Heracles-5_2.
* Upstream edits.
2016-05-06 <[email protected]> Tag: AeroChem-Heracles-5_2-b6
* Updated nitrate mie tables to v2.5.
* Corrected the dimensions spec of the LTO, CDS and CRS aviation
emissions in the ExtData.rc files.
* GEOSachem and MAM - read the HTAP aviation emissions from fvInput.
* Updated GMI to Heracles-UNSTABLE.
* Upstream edits from Heracles-UNSTABLE.
2016-04-17 <[email protected]> Tag: AeroChem-Heracles-5_2-b5
* Revert to using PFL_LSAN and PFI_LSAN instead of DQRL which is still
not properly filled in the single-moment cloud microphysics.
* Upstream edits from Heracles-UNSTABLE.
2016-04-08 <[email protected]> Tag: AeroChem-Heracles-5_2-b4
* Turned on the Marring correction for dust grav settling velocity.
* Set dust in-cloud scavenging efficiency factors to 0.3.
* Updated the global sea salt emission factors for 0.5 degrees
and finer resolutions.
* Set the fraction of NH3 and NH4a tracers scavenged in cold (T < 258K)
convective cloud updrafts to 0.
* Set the fraction of dust scavenged by large-scale rainout
at T < 258K (snow) to 0.
* Set the HNO3 read from the monthly files to 0.20*GMI_NH3
* Fixed DQRL in cloudnew.F90 - moved the calculation of DQRL to a 'later'
point in the code where the values of the terms it depends on are
properly filled.
* Upstream edits from Heracles-UNSTABLE.
2016-03-15 <[email protected]> Tag: AeroChem-Heracles-5_2-b3
* Updated OPS setup to use HTAP-v2.2 emissions and ocean DMS from
Lana et al., 2011.
* Corrected refresh time templates in the nitrate ExtData RC files.
2016-03-15 <[email protected]> Tag: AeroChem-Heracles-5_2-b2
* Replaced CNV_QC (which contrary to the description in the export
spec is NOT convective condensate) with the sum of water and ice
mass fractions of convective cloud (QLCN + QICN)
* Fixed large scale wet removal when the model is run with the
2-moment cloud microphysics: replaced PFL_LSAN and PFI_LSAN with
DQRL (which is filled by the single- and two-moment cloud microphysics)
* HNO3 from GMI was scaled down by an additional factor of 2.5. This results
in HNO3 wich is equal to 0.17*HNO3_GMI.
* Updated volcanic emissions to v7.
* Apply (rather than omitting) emissions from volcanoes that are
below the 'surface' model layer.
* Upstream edits from Heracles-UNSTABLE.
2016-02-26 <[email protected]> Tag: AeroChem-Heracles-5_2-b1
* Enabled nitrate aerosol in all GOCART setups.
* Updated NH3 emissions from fires to QFED (HFED-v1.0 does not
include NH3 emissions so in the MERRA2 setup for years 1996-2000
for now we rely on QFED climatology); the anthropogenic NH3
emissions are from EDGAR-v4.2.
* HNO3 from GMI was scaled by a factor of ~0.4 based on the comparison
with CASTNET.
* Changed sea salt gamma factor from 0.2 to 0.1.
* Modified washout for gas tracers.
* Increased deposition velocity of sea salt aerosol over land.
* Implemented new functionality in the gogo.x utility to modify
the CO2 in a binary GOCART restart file by adding uniform value
specified by the user.
* Upstream edits from Heracles-UNSTABLE.
2016-02-18 <[email protected]> Tag: AeroChem-Heracles-5_1-b5
* Enabled nitrate aerosol in the Chem_MieRegistry.rc files.
* Nullify pointers to the AOD LUTs and set AOD LUTs only in the INIT
methods of the GOCART aerosol types.
* Upstream edits from Heracles-UNSTABLE.
2016-02-10 <[email protected]> Tag: AeroChem-Heracles-5_1-b4
* Mods to accept new wet deposition scheme for GOCART/CARMA.
* Upstream edits from Heracles-UNSTABLE.
2016-02-10 <[email protected]> Tag: AeroChem-Heracles-5_1-b3
* Added aerosol nitrate in GAAS.
* Protection against numerical issues in the nitrate driver
triggered at very low temperatures.
* Corrected the time templates in the NI ExtData resource file.
* Correct error in timing of H2O2 recycling in the sulfate chem
driver.
2016-01-21 <[email protected]> Tag: AeroChem-Heracles-5_1-b2
* Added aerosol nitrate to the radiatively active aerosol types.
2016-01-21 <[email protected]> Tag: AeroChem-Heracles-5_1-b1
* This tag is based on Heracles-5_1.
* GOCART/NI and nitrate optics.
* DNA G.C.
* Edits for ExtData aware GOCART.
* Removed entries in the full, volcanic, etc. resource files
that are handled by the ExtData GC.
* OCS and stratospheric sulfate.
* Updates for MAM7 and GEOSachem.
2015-06-18 <[email protected]> Tag: AeroChem-Heracles-4_0-b1
* This tag is based on the current Heracles-UNSTABLE which will soon
be released as Heracles-4_0.
* Dust optics was updated to v-15.3
* Added MATRIXChem G.C.
* Updates for MAM7 and GEOSachem
2014-11-19 <[email protected]>, Tag: Heracles-1_0_UNSTABLE_JEN
* Rn: Correct emission to number density conversion constant.
2014-09-23 <[email protected]>, Tag: Heracles-1_0_UNSTABLE_JEN
* ChemEnv: Add calculation of dry-air density, AIRDENS_DRY, and import to GOCART
* CH4: Add exports for CH4 dry-air mole fraction.
2014-09-03 <[email protected]> , Tag AeroChem-Fortuna-2_5-b18-m1
* This tag is based on MERRAero 'AeroChem-Fortuna-2_5-b18' tag.
* It includes additional diagnostics in IRRAD needed to calculate longwave ADRE - these
edits are from the 'prc+AeroChem-Fortuna-2_5-b18-IR_only' tag.
* Mie tables for dust are updated to v15_3.
* pyobs failed to build with the gcc and SIVO-PyD using the g5_modules
in 'AeroChem-Fortuna-2_5-b18'. Following Matt's recommendation these were
changed to 'other/comp/gcc-4.6.3-sp1' and 'other/SIVO-PyD/spd_1.6.0_gcc-4.6.3-sp1'
2014-06-27 <[email protected]>, Tag: Ganymed-4_0_BETA11_JEN
* CFC: Add export state for the CFC-12 photorate. In CFC_Registry.rc, units for
CFC12SLS and CFC12TLS are m^{-3}s^{-1}.
2014-03-14 <[email protected]> , Tag asd-Ganymed-4_0_BETA10-a1
* Synced asd-Ganymed-4_0_BETA9-a2 with upstream edits from Ganymed-4_0_BETA10.
2014-03-12 <[email protected]> , Tag asd-Ganymed-4_0_BETA9-a2
* Merged edits from asd-Ganymed-4_0_BETA8-a1 with Ganymed-4_0_BETA9.
* Updated volcanic emissions to version 4.
* Dust optical tables were updated to version 14.2
2014-02-06 <[email protected]> , Tag asd-Ganymed-4_0_BETA8-a1
* Changes implemented by Pete:
1) Support for multiple instances of BC. BC_GridComp.rc
is changed to specify regional tags, and introduce BC_GridComp---full.rc
as analog to SU_GridComp—full.rc. This change required updates as well to
GOCART_GridCompMod.F90 and Aero_GridCompMod.F90 to support handling of
optics for multiple BC instances. GOCART variable name checking was
more specific so that only the 'full' instances of BC and OC are put
in Aero bundle for radiation (and only SO4 and SO4v for sulfate).
Presumes full tracer names are OC(BC)PHILIC/PHOBIC.
2) Updated SU_GridCompMod.F90 to permit volcanic data tables to include
also start time and end time for eruption emissions (required update to
SulfateChemDriverMod.F90). Also made change to add diagnostic calculation of
aerosol surface area (for StratChem). Finally, name handling for multiple
instances was improved so that volcanic instance (volc) is treated uniquely
whereas all other tags (which would nominally be regional/emission specific)
are given same names as tropospheric (full) tag. This is needed for
radiation diagnostics in module. Also made a small change in Chem_MieMod.F90
to accommodate more robust handling of multiple SU instance naming.
3) Updated CARMA to latest, including coupling to GOCART SU as source of
gas H2SO4. Most changes relevant to sulfate simulation.
This tag as well as the base tag Ganymed-4_0_BETA8 include setling of OC, BC and
SU aerosols.
2014-02-04 <[email protected]> , Tag asd-G4U-RRTMG-AeroState-r2
* Mods for AERO state - work in progress. This is an intermediate tag
based on Matt's 'Ganymed-4_0_UNSTABLE-RRTMGPU-withPGIedits'.
The new Aero state code is run alongside the existing Aero bundle
code for testing peroses.
The tag is zero-diff to Matt's tag if the Aero state is passive in
in solar.
2013-11-04 <[email protected]>, Tag: Ganymed-4_0_UNSTABLE_JEN-m1
* GOCART::CH4: Zenith angle range test.
* GOCART::O3: Updates for NetCDF parallel I/O.
2013-08-09 <[email protected]> , Tag asd-Ganymed-4_0_UNSTABLE-MERRA2-a6
* Mods for NR and MERRA2 in Ganymed-4_0_UNSTABLE.
GOCART: Changed paths of NR (asd-Ganymed-4_0_UNSTABLE-MERRA2-a4) and
MERRA2 (asd-Ganymed-4_0_UNSTABLE-MERRA2-a5) external files to standard
locations in fvInput; Fixed reading of Edgar-4.x non-climatological files;
Updated fire emissions to QFED-2.4-r6.
GEOS-GCM: synced with Ganymed-4_0_UNSTABLE
2013-07-31 <[email protected]>, Tag: Ganymed-4_0_UNSTABLE_JEN
* CO2_GridComp: Anton's asd-Ganymed-4_0_UNSTABLE-MERRA2-a3, which includes the
CMS emissions option merged with multiple instantiation.
2013-07-26 <[email protected]> , Tag asd-Ganymed-4_0_UNSTABLE-MERRA2-a2
* Mods for NR and MERRA2 in Ganymed-4_0_UNSTABLE.
GOCART: Added resource files for MERRA2; Updated oxidants and emissions;
Turned off CMS emissions in CMIP, OPS, PIESA; Added optional argument
units in Chem_UtilMPread().
2013-03-29 <[email protected]> , Tag AeroChem-Ganymed-2_1-b2
* Updated system to Ganymed-2_1_p5
NOTE: Total corrected precipitation is now exported from Surface.
2013-03-14 <[email protected]> , Tag AeroChem-Ganymed-2_1-b1
* Updated system to Ganymed-2_1_p3
2013-02-06 <[email protected]> , Tag AeroChem-Ganymed-1_0-b4
* Updated system to Ganymed-1_0_p7
2013-03-06 <[email protected]>, TRUNK
* CO2_GridComp reconstructed for multiple instantiation.
2013-02-06 <[email protected]> , Tag AeroChem-Ganymed-1_0-b3
* Wholesale revisions for cubed-sphere (merged AeroChem-Ganymed-1_0-b2
with Ganymed-1_0_p5)
* GOCART: Revert parameterization of dust emissions to the 'standard'
GOCART scheme (pre AeroChem-Fortuna-2_5-b25); Merge in PRC's middle
of the month restarts mods; Updated SU to AeroChem-Ganymed-1_0_p5-b2+prc;
* StratChem: Updated to AeroChem-Ganymed-1_0_p5-b2+prc
2013-01-30 <[email protected]>, Tag Ganymed-2_1_p1_JEN
* CHEM: Multiple RATS_PROVIDERs. For example, GOCART::OX for
ozone and PCHEM for the others.
* GOCART::CH4: Added photolysis.
* GOCART::O3: Wholesale revisions for cubed-sphere, added deposition.
2012-01-25 <[email protected]> , Tag AeroChem-Ganymed-1_0-b2
* GOCART: Dust emissions are computed using friction velocity;
Modified the threshold velocity soil moisture correction term;
Increased the LAI threshold for dust emissions shut-off to 0.7.;
Safeguards to avoid float point exception in
SulfateChemDriverMod.F90::szangle().
2012-11-30 <[email protected]> , Tag AeroChem-Ganymed-1_0-b1
* Merged GEOSadas-5_9_1_p2_UNSTABLE with AeroChem-Fortuna-2_5-b25.
GOCART: Updated biomass burning emissions under PIESA to
QFED-2.4.r1; Updated dust optics to v11_2.
2012-11-29 <[email protected]>, Tag AeroChem-Fortuna-2_5-b25
* GOCART: Exploit new dust source function, updates to
DU_GridCompMod.F90 and DU_GridComp.rc. Also changes in
Chem_Shared/DustEmissionMod.F90. Introduce a new source
computing function that takes as input wind and an input
threshold speed. Permits calling with different thresholds
depending on source. Also update Chem_SettlingMod.F90 to use a
new explicit advection algorithm.
2012-10-25 <[email protected]>, Tag AeroChem-Fortuna-2_5-b24
* CARMA: Add a hook to take volcanic SO4 produced from GOCART
SO4volc tracer and import to CARMA as H2SO4 vapor
2012-07-16 <[email protected]>, Tag AeroChem-Fortuna-2_5-b23
* CARMA: add in sulfate optics to radiative forcing code; modify
sulfate initial particle size distribution
2012-07-13 <[email protected]>, Tag AeroChem-Fortuna-2_5-b22
* CARMA: add in sulfate optical thickness diagnostic
2012-06-29 <[email protected]>, Tag AeroChem-Fortuna-2_5-b21
* GOCART: update optics tables for dust to v10_2 table; capture
bug fix Eric found in CO/CO2 BB injection heights
2012-06-05 <[email protected]>, Tag AeroChem-Fortuna-2_5-b20
* GOCART: capture some fixes in SulfateChemDriverMod.F90 for
regression tests and volcanic emission handling; also update
resource files for ops checkout
2012-04-25 <[email protected]>, Tag AeroChem-Fortuna-2_5-b19
* CARMA: fix initialization of old gas mmr; setup ut_CARMA.F90
2012-04-24 <[email protected]>, Tag AeroChem-Fortuna-2_5-b18
* GOCART: back off the scaling for QFED BB emissions-> new scale
factor = 1.0
* CARMA: fix makefile for compiling unit tester
2012-04-19 <[email protected]>, Tag AeroChem-Fortuna-2_5-b17
* Remove MAM code base because it requires update of MAPL_Base
that is apparently broken
* CARMA: diagnostics for sulfate species, add non-advected
tracers, setup sulfate program for 10 Tg S yr-1 H2SO4
injection in the tropics
2012-04-18 <[email protected]>, Tag AeroChem-Fortuna-2_5-b16
* CHEM: Added ability to export modeled or observed precipitation
* CARMA: Updates for sulfate aerosol modeling
2012-04-12 <[email protected]>, Tag AeroChem-Fortuna-2_5-b15
* GOCART: change sulfate oxidants (note scaling of OH in
SulfateChemModule) and DMS and dust source files under PIESA
2012-04-12 <[email protected]>, Tag AeroChem-Fortuna-2_5-b14
* GOCART: update default optics tables (especially increase mass
extinction efficiency for SU)
* CARMA: updates for clear sky calculations
2012-04-12 <[email protected]>, Tag AeroChem-Fortuna-2_5-b13
* GOCART: update seasalt emission and dust emission routines for
generality and compatibility with MAM; correct in cloud H2O2
removal in SO2 oxidation and add flexibility for reading
A2_ACCMIP sulfate emissions; add depolarization ratio
calculation to optical tables and calculators
* MAM: add MAM codebase
* CARMA: clean up code
2012-03-22 <[email protected]>, Tag AeroChem-Fortuna-2_5-b12
* GOCART: Implement new SST correction for sea salt emissions
(turned on by default); turn off convective removal in LS wet
inside SU; reset H2O2 scavenging in LS wet; start putting hooks
in for using other variables for LS wet (partially implemented
for SU); also fix longitude bug with embedded data table
database for volcanic SO2 emissions
* CARMA: Implement new SST correction for sea salt emissions
2012-03-05 <[email protected]>, Tag AeroChem-Fortuna-2_5-b11
* StratChem: Update StratChem per JEN/LDO to Fortuna-2_5_b1_JEN
* Updated GEOSgwd_GridComp to Fortuna-2_5_b1_JEN and included
change to AGCM.rc.tmpl to help with polar vortex breakup over
Antarctica
* GOCART: add to SU_GridComp*rc the particle radius and an RH flag
suitable for doing sulfate settling (see also changes to
Chem_SettlingMod.F90
2012-03-02 <[email protected]>, Tag AeroChem-Fortuna-2_5-b10
* GOCART: Change SO2 so it is not scavenged in ConvectionMod.F90
2012-02-16 <[email protected]>, Tag AeroChem-Fortuna-2_5-b9
* CARMA: Add binwise column integrated mass loading for dust
* GOCART: Add resolution dependent tuning factors for DU and SS emissions
2012-02-10 <[email protected]>, Tag AeroChem-Fortuna-2_5-b8
* adjust tuning factors of DU, SS, turn off SST correction in SS
registry
* increase BB tuning under QFED emissions for BC, OC, SU (top
level and PIESA only, not CMIP); increase by 25%
* add diagnostics to CARMA
* change default dust optics to v5 tables
2012-01-24 <[email protected]>, Tag AeroChem-Fortuna-2_5-b7
* bring aerosol code back to TRUNK
* tune up dust emissions, sea salt
* update to recent changes in GMICHEM (2011-12-27 notes)
including changes to GEOS_MoistGridComp.F90 and
GEOS_PhysicsGridComp.F90
2012-01-19 <[email protected]>, Tag AeroChem-Fortuna-2_5-b6
* b5 was intermediary where we introduced the made the GOCART
aerosols unfriendly to MOIST and used the offline convective
scavenging code to do both convective mixing and scavenging.
This is applied for all aerosols DU/BC/SS/SU/OC under GOCART.
* b6 maintains this but also changes the name of the offline
scavenging module to be more consistent with other stuff
under Chem_Shared.
* b6 also brings major changes under the hood to CARMA
* TO DO: tune GOCART aerosols for new scavengin
bring BC/OC/SS/DU/SU code back to trunk (on branch for now)
update to recent changes in GMI (requires new restart for
moist)
2012-01-05 <[email protected]>, Tag AeroChem-Fortuna-2_5-b4
* Fix a bug in ras.F90 where boundary layer aerosol was no scavenged
2011-12-27 <[email protected]> HEAD
* GMICHEM: Enable lightning NO production based on flash rates imported
from MOIST (LFR).
2011-12-16 <[email protected]>, Tag AeroChem-Fortuna-2_5-b3
* Add regional masking capability for sulfate code
* Update StratChem to head
2011-12-13 <[email protected]> HEAD
* Update StratChem to (1) JPL 2011 and (2) disallow any changes
to H2O and H2OCOND based on internal microphysics (SUBROUTINEs
pscs and sediment).
2011-11-09 <[email protected]>, Tag AeroChem-Fortuna-2_5-b2
* Update sea salt emission scaling factor for 2.5 tag
* Update GMI Code and GEOS_ChemGridComp.F90 to JEN latest
2011-10-20 <[email protected]>, Tag AeroChem-Fortuna-2_5-b1
* Update Aerosol codes to Fortuna-2_5 ops tag:
GEOSadas-5_7_2_p3_UNSTABLE
* Sea salt emissions code changes: not presently exercising, but
including hooks for various emission efficiency factors based on
Fan and Toon (2011). Also, changed sense of SeasaltEmission
routines in Chem_Shared
* CARMA code now passes an AERO and AERO_DP bundle. AERO
bundle tested and available for radiation. Note: you must fit
the CARMA aerosols into a structure similar to GOCART to get
optical tables read correctly. This includes filling
Chem_MieRegistry.rc with correct number of tracers and names
(e.g., doing_DU = YES and provide CARMA type names). NOTE
ALSO: there are numbers hard coded in radiation (see
MAX_NUM_RADIUS in GEOS_SolarGridComp.F90 and
GEOS_IrradGridComp.F90 and the associated sorad.F90 and
irrad.F90. These numbers need adjustment for a larger number of
size bins.
* Bump up dust and seasalt emission scaling factors to account for
lower surface wind speeds in Fortuna-2_5 based tag
2011-09-21 <[email protected]> Tag: Hypatia-1_0_UNSTABLE_JEN
* Generalized the connectivities between GMICHEM and GOCART
to support those cases in which fewer than all five GOCART
dust/aerosol classes are being imported to GMICHEM. Also allows
GMICHEM to be run in tandem with, for example, GOCART::Rn.
* Updates to gmi_acg.pl for units and for filling DD and WD export
states.
* SC: Fill export O3.
2011-09-06 <[email protected]>, Tag AeroChem-Fortuna-2_4-b7
* Include changes below
* Fix bug in SulfateChemDriverMod.F90 in applying diurnal
BB emissions to SO2
2011-09-01 <[email protected]>
* Correction of seasalt emissions based on SST values following
Jaegle et al., 2011
2011-08-31 <[email protected]>, Tag AeroChem-Fortuna-2_4-b7
* fix in GOCART_GridCompMod.F90 to allow GOCART to run w/out
requiring aerosols
* CARMA: updates to particle heating codes
2011-07-19 <[email protected]>, Tag AeroChem-Fortuna-2_4-b6
* fix error in "fnum" in SS_GridComp.rc
* fix error in Compute_Diags for BC/OC/SU
* modify the dust emission factor in DU_GridComp.rc
* update QFED locations for SU/BC/OC/CO/CO2
* update SulfateChemDriverMod to permit reading new 1x anthro emissions
* many updates to CARMA re: black carbon, optics, heating code
* Additions to HISTORY.rc for diagnostics
2011-07-06 <[email protected]>
* GMICHEM: New functionality added to gmi_acg.pl that adds export states
for species tendencies due to chemistry. Compiled and tested in
Fortuna-2_4_BETA2 and put on HEAD. Pushed tag: Fortuna-2_4_BETA2_JEN.
2011-05-25 <[email protected]>
* GMICHEM: New functionality added to gmi_acg.pl that adds export states
for reaction rates constants and rates generated by chem_update.F90.
Compiled and tested in Fortuna-2_4_BETA2 and put on HEAD.
2011-04-29 <[email protected]>
* GMICHEM: New gmi_acg.pl, along with mapl_acg.pl, are run in a three-
step process to generate code fragments for declaring and getting
pointers and filling some export states. Scavenging and deposition
export specs have been added for several species, in addition to HBr
(see entry immediately below). Tested in Fortuna-2_4_BETA1 and
compiled in BETA_2, and put on HEAD.
2011-04-12 <[email protected]>
* GOCART: CO and CO2 rc changes from 2011-03-18 propagated to CMIP and PIESA.
* GMICHEM: Inserted Henry's Law constants for HBr in setkin_depos.h.
2011-03-30 <[email protected]> STRATCHEM updates:
* Import A-grid cell area from DYN, making SUBROUTINE setmcor obsolete.
* Added capability to set lightning NOx source magnitude in SC_GridComp.rc.
* Maximum solar zenith angle for daylight computations now parsed from
SC_GridComp.rc. Code and tables work up to 94 degrees.
* Added Chapman functions to meso_phot.F.
* Grab new xtab file from Randy Kawa that fixes NO3 photolysis rate.
* Use h2oc from SUBROUTINE pscs instead of QCTOT when sedimenting NAT.
* Merged and compiled with Fortuna-2_4_UNSTABLE and put on HEAD.
2011-03-18 <[email protected]>
* Removed the GEOS-4 references in CO2.
* Rewrote the PBL partitioning for biomass burning emissions in
both CO and CO2, using ZLE (instead of pressure) to get layer
depths and compare with ZPBL. Not zero diff.
* Moved CO emission amplification factors ff, bf, bb to RC file.
* Merged with Fortuna-2_4_BETA1 and put on HEAD.
2011-03-11 <[email protected]>, Tag AeroChem-Fortuna-2_4-b3
* merge to Fortuna-2_4_BETA1
2011-03-08 <[email protected]>, Tag AeroChem-Fortuna-2_4-b2
* update SU volcanic emissions
* tweak SS resource file particle sizes and emission
efficiency
* change SS optical lookup tables to v3
2011-03-09 <[email protected]>, Tag AeroChem-Fortuna-2_3-b10
* bring in changes from AeroChem-Fortuna-2_4-b2
2011-02-25 <[email protected]>, Tag AeroChem-Fortuna-2_3-b8
* fixed bug BC/OC_GridCompMod.F90 that was removing hydrophobic
BC/OC in wet deposition
* turned GAAS off by default in GEOS_ChemGridComp.rc
* turned off AOT calculation in post-processing scripts
* modified diagnostic names in SU (and HISTORY) to be all
upper case
* modified AGCM resource to have diurnal BB emissions on
2011-02-19 <[email protected]>, Tag AeroChem-Fortuna-2_3-b7
* Introduced scaling factors in SS_GridComp.rc (and code)
to scale sea salt emissions
* Scale sea salt emissions to 0.5 x calculated emissions
to reduce sea salt loading
* Change dust wet removal and convective scavenging efficiency
to be like that of hydrophilic aerosol; based on results of
Nowottnick et al. 2011 for TC4 study
* Bug fix in GOCART unit tester and GNUmakefile
* Updates to CARMA from SVN (introduces dry dep)
* Add CARMA unit tester
* Note: Arlindo adds broken H2O_GridComp to prior tag; I remove
it from this tag because it fails to compile; resorts to stubs
2010-12-09 <[email protected]>, Tag AeroChem-Fortuna-2_3-b4
* Introduced GAAS_GridComp, the Aerosol Assimilation component.
This version reads in gridded AOD analysis with averaging
kernel.
* GEOS_ChemEnvGridComp: now exports "DELP". This really should
come from Dynamics.
* MAPL_Base: introduced MAPL_SimpleBundle
* Chem_Base: introduced Chem_SimpleBundle (extension of
MAPL_SimpleBundle); replaced Chem_AodMod with a newer version
based on the MAPL_SimpleBundle.
2010-11-30 <[email protected]>, Tag AeroChem-Fortuna-2_3-b3
* Added metadata for cloud-aerosol interaction to GOCART
DU/BC/OC/SU/SS contributed by P. Colarco, D. Barahona; made
associated modification to Chem_RegistryMod.F90
* Updated CARMAchem_GridComp to NCAR/SVN codebase; changes to
coupler and utility modules to accomodate; updated
SmokeEmissionMod.F90; contributions by P. Colarco, J.A. Smith
* GOCART resource files currently using QFED emissions
2010-11-30 <[email protected]>
* Bug fixes to extinction and scattering coefficients: the total
extinction and scattering coefficients of SS, DU, SU, OC and BC
were not summed over the bins.
2010-11-23 <[email protected]>
* Maring correction to dust settling velocity. The correction
is not applied by default. It can be enabled by setting the
maringFlag in DU_GridComp.rc to an integer different than 0.
2010-11-19 <[email protected]>, Tag AeroChem-Fortuna-2_3-r2-b1
* GOCART_GridCompMod: merge to TRUNK, remove CARMA service
component reference
* CARMAchem_GridComp: move to latest version of core code
based on NCAR SVN repository; restructured relative to older
* GOCART: Update BC/DU/OC/SS/SU components to include metadata
from registry files needed in aerosol indirect effect
* Chem_Base/Chem_RegistryMod.F90: Merged to TRUNK to incorporate
metadata needed from GOCART for aerosol indirect effect; removed
references to AutoChem and CARMA components from module and
associated Chem_Registry.rc files
2010-11-18 <[email protected]>, Tag AeroChem-Fortuna-2_3-r2
* Bug fixes contributed by A. Darmenov, J. E. Nielsen & L. Ott.
* Chem_Base/Chem_Registry.rc: added missing doing_CH4 resource;
similar changes in CMIP and PIESA rc files.
* CO_GridComp: fixed biogenic emission bug; emissions were being
scaled twice and sometimes uninitialized leading to
non-reproducibility. GNUmakefile brought to trunk and rc file
modified to refer to proper CH4.
2010-11-12 <[email protected]>, Tag AeroChem-Fortuna-2_3-r1
* Introducing OPS, PIESA and CMIP specific resource files
* Switching to QFED-v2 biomass burning emissions for OPS and PIESA
* Synchronized with Fortuna-2.3 UNSTABLE as of today
* CH4 component now included (off by default)
* CARMA is also included (off by default)
* GMI includes recent updates by Eric Nielsen (off by default)
* CO_GridCompMod: fixed bug in CMIP style emissions/resource filename handling
* Chem_Shared: introduced SulfateChemDriverMod.F90 to replace
chemistry in GOCART/SU component
* Emissions: handling of emissions in SulfateChemDriverMod.F90
assumes emission files are cyclic
* FvDyCore: implemented blending method for intermittent replay
* Chem_UtilMod.F90: implement bug fix to check vertical level orientation
of 3d input files
2010-04-15 <[email protected]>, Tag asd-piesa-Fortuna-2_1_p2-m17-AR5
* Adds new GOCART diagnostics required by the CMIP5/AR5
experimental protocol.
* Fixes SO4MASS units in SU_Registry.rc
2010-04-15 <[email protected]>, Tag AeroChem-Fortuna-2_1-m3
* GOCART on creation of the chem bundle w_c change sense of w_c%rh
to be assumed scaled 0 - 1. In components making Chem_MieQuery
calls removed the division of w_c%rh by 100, so now the code
uniformly expects rh scaled 0 - 1.
2010-04-13 <[email protected]>, Tag AeroChem-Fortuna-2_1-m3
* Fixed problem with O3/OX in radiation
* Temporarily removed AERO_PROVIDER/RATS_PROVIDER from
GEOS_ChemGridComp.rc because of ANALYSIS_OX_PROVIDER
issue
2010-03-22 <[email protected]>, Tag AeroChem-Fortuna-2_1-m2
* Adds CARMAchem and GEOSCHEMchem components at the GEOSchem_GridComp
level; the old CARMA under GOCART is now orphanded
* Adds GEOS_ChemGridComp.rc resource file; here is where
AERO_PROVIDER/RATS_PROVIDER is now specified; it also
have hooks for enabling each child component.
* Adds diurnal cycle for biomass burning emissions in GOCART.
* Initial implementation of GOCART/GMI coupling; this will be
revised later to include the EXTERNAL_CHEMISTRY bundle as
an import to GOCART.
* CHEMISTRY now exports an standard set of RATS
which is then connected at the Physics level; StratChem/GMI
tracer variable names no longer qualified by the component name
(e.g., it is now "CO" instead of "GMI::CO"); GOCART variables
still qualified with GOCART:: (to be fixed in the next release).
2007-07-11 <[email protected]>, Tag gAdas-1_5beta10p14-c1
* DU_GridCompMod.F90: fixed bin-averaged DU_Mass export variable
which was not being computed (output was all zeros)
* SS_GridCompMod.F90: ditto
* SS_Registry.rc: changed "Dust" to "Seasalt"
2007-06-29 <[email protected]>, Tag gAdas-1_5beta10p12-c1
* GEOS_ChemEnvGridComp.F90: added non-convective precip (NCN_PRCP)
as an export, eliminated debris imports and exports (FRLAND, FRICE,
FROCEAN and EPV)
* GEOS_ChemGridComp.F90: made connection for NCN_PRECP
* GOCART_GridCompMod.F90: now imports NCN_PRCP
* ??_GridCompMod.F90 where ?? stands for DU, SS, SU, BC and OC -
now uses NCN_PRCP directly; fixed bug which was overwriting the
TPREC pointer and causing a corrupted diagnostic.