diff --git a/articles/greenfeedr.html b/articles/greenfeedr.html index 05de20c..e68d66d 100644 --- a/articles/greenfeedr.html +++ b/articles/greenfeedr.html @@ -326,7 +326,7 @@

Process pellet #> Please set the 'gcup' parameter based on the 10-drops test. #> If units have different gram values, define 'gcup' as a vector with an element for each unit. #> RFID is NULL. It is recommended to include it. -#> Pellet intakes file created and saved to /tmp/RtmpesFqIb +#> Pellet intakes file created and saved to /tmp/RtmpB1bLED head(result) #> # A tibble: 6 × 3 diff --git a/pkgdown.yml b/pkgdown.yml index 50964aa..f90779f 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -3,7 +3,7 @@ pkgdown: 2.1.1 pkgdown_sha: ~ articles: greenfeedr: greenfeedr.html -last_built: 2025-01-29T12:01Z +last_built: 2025-01-29T13:07Z urls: reference: https://gmbog.github.io/greenfeedr/reference article: https://gmbog.github.io/greenfeedr/articles diff --git a/reference/compare_gfdata-1.png b/reference/compare_gfdata-1.png index 5e837ba..76740bd 100644 Binary files a/reference/compare_gfdata-1.png and b/reference/compare_gfdata-1.png differ diff --git a/reference/compare_gfdata-2.png b/reference/compare_gfdata-2.png index f2b6e5e..8367d47 100644 Binary files a/reference/compare_gfdata-2.png and b/reference/compare_gfdata-2.png differ diff --git a/reference/compare_gfdata.html b/reference/compare_gfdata.html index ff96b20..6209099 100644 --- a/reference/compare_gfdata.html +++ b/reference/compare_gfdata.html @@ -81,9 +81,10 @@

Examples finalrep, start_date = "2024-05-13", end_date = "2024-05-20") -#> Error in dplyr::filter(., as.Date(StartTime) >= as.Date(start_date), as.Date(StartTime) <= as.Date(end_date), CH4GramsPerDay > 0, AirflowLitersPerSec >= 25): ℹ In argument: `as.Date(StartTime) >= as.Date(start_date)`. -#> Caused by error in `charToDate()`: -#> ! character string is not in a standard unambiguous format +#> During the data processing 256 records were removed from the finalized data +#> During the data processing 257 records were added to the finalized data + + diff --git a/reference/figures/Cheatsheet.pdf b/reference/figures/Cheatsheet.pdf index 0cee85d..dfd4e9e 100644 Binary files a/reference/figures/Cheatsheet.pdf and b/reference/figures/Cheatsheet.pdf differ diff --git a/reference/figures/Cheatsheet.png b/reference/figures/Cheatsheet.png index a3495df..2725b94 100644 Binary files a/reference/figures/Cheatsheet.png and b/reference/figures/Cheatsheet.png differ diff --git a/reference/pellin.html b/reference/pellin.html index 8217787..a06c542 100644 --- a/reference/pellin.html +++ b/reference/pellin.html @@ -119,7 +119,7 @@

Examples#> Please set the 'gcup' parameter based on the 10-drops test. #> If units have different gram values, define 'gcup' as a vector with an element for each unit. #> Animal ID not visting GreenFeed: Animal11, Animal12, Animal13, Animal14, Animal16, Animal17, Animal18, Animal19, Animal20, Animal21, Animal22, Animal23, Animal24, Animal25, Animal26, Animal27, Animal28, Animal29, Animal30, Animal32 -#> Pellet intakes file created and saved to /tmp/RtmpVtrUs8 +#> Pellet intakes file created and saved to /tmp/RtmpYvWH31 #> # A tibble: 416 × 4 #> Date FarmName RFID PIntake_kg #> <date> <chr> <chr> <dbl> diff --git a/search.json b/search.json index fb5f7d6..7c58952 100644 --- a/search.json +++ b/search.json @@ -1 +1 @@ -[{"path":"https://gmbog.github.io/greenfeedr/LICENSE.html","id":null,"dir":"","previous_headings":"","what":"GNU General Public License","title":"GNU General Public License","text":"Version 3, 29 June 2007Copyright © 2007 Free Software Foundation, Inc.  Everyone permitted copy distribute verbatim copies license document, changing allowed.","code":""},{"path":"https://gmbog.github.io/greenfeedr/LICENSE.html","id":"preamble","dir":"","previous_headings":"","what":"Preamble","title":"GNU General Public License","text":"GNU General Public License free, copyleft license software kinds works. licenses software practical works designed take away freedom share change works. contrast, GNU General Public License intended guarantee freedom share change versions program–make sure remains free software users. , Free Software Foundation, use GNU General Public License software; applies also work released way authors. can apply programs, . speak free software, referring freedom, price. 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Definitions","title":"GNU General Public License","text":"“License” refers version 3 GNU General Public License. “Copyright” also means copyright-like laws apply kinds works, semiconductor masks. “Program” refers copyrightable work licensed License. licensee addressed “”. “Licensees” “recipients” may individuals organizations. “modify” work means copy adapt part work fashion requiring copyright permission, making exact copy. resulting work called “modified version” earlier work work “based ” earlier work. “covered work” means either unmodified Program work based Program. “propagate” work means anything , without permission, make directly secondarily liable infringement applicable copyright law, except executing computer modifying private copy. Propagation includes copying, distribution (without modification), making available public, countries activities well. “convey” work means kind propagation enables parties make receive copies. 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Interpretation of Sections 15 and 16","title":"GNU General Public License","text":"disclaimer warranty limitation liability provided given local legal effect according terms, reviewing courts shall apply local law closely approximates absolute waiver civil liability connection Program, unless warranty assumption liability accompanies copy Program return fee. END TERMS CONDITIONS","code":""},{"path":"https://gmbog.github.io/greenfeedr/LICENSE.html","id":"how-to-apply-these-terms-to-your-new-programs","dir":"","previous_headings":"","what":"How to Apply These Terms to Your New Programs","title":"GNU General Public License","text":"develop new program, want greatest possible use public, best way achieve make free software everyone can redistribute change terms. , attach following notices program. safest attach start source file effectively state exclusion warranty; file least “copyright” line pointer full notice found. Also add information contact electronic paper mail. program terminal interaction, make output short notice like starts interactive mode: hypothetical commands show w show c show appropriate parts General Public License. course, program’s commands might different; GUI interface, use “box”. also get employer (work programmer) school, , sign “copyright disclaimer” program, necessary. information , apply follow GNU GPL, see . GNU General Public License permit incorporating program proprietary programs. program subroutine library, may consider useful permit linking proprietary applications library. want , use GNU Lesser General Public License instead License. first, please read .","code":" Copyright (C) This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program. If not, see . Copyright (C) This program comes with ABSOLUTELY NO WARRANTY; for details type 'show w'. This is free software, and you are welcome to redistribute it under certain conditions; type 'show c' for details."},{"path":"https://gmbog.github.io/greenfeedr/articles/greenfeedr.html","id":"download-data-with-get_gfdata","dir":"Articles","previous_headings":"","what":"Download data with get_gfdata()","title":"Introduction to greenfeedr","text":"first step working GreenFeed retrieve data system. can done manually logging GreenFeed web interface C-Lock Inc. using username password. However, simpler approach: via API using get_gfdata() function. function automates data retrieval process, allowing specify user password, units, date range download data directly C-Lock Inc. server. Note multiple studies simultaneously, can define list studies follows:","code":"USER <- \"your_username\" PASS <- \"your_password\" studies <- list( list( Experiment = \"Experiment_01\", Unit = c(2, 3), StartDate = \"2024-01-20\", EndDate = Sys.Date(), save_dir = \"/tempdir()/Experiment_01/\" ), list( Experiment = \"Experiment_02\", Unit = c(212), StartDate = \"2024-02-01\", EndDate = Sys.Date(), save_dir = \"/tempdir()/Experiment_02/\" ) ) # Here you loop (using 'for') over all your studies applying get_gfdata() function # for (element in studies) { # get_gfdata(USER, PASS, element$Experiment, element$Unit, element$StartDate, element$EndDate, element$save_dir) # }"},{"path":"https://gmbog.github.io/greenfeedr/articles/greenfeedr.html","id":"how-it-looks-the-greenfeed-data","dir":"Articles","previous_headings":"","what":"How it looks the GreenFeed data?","title":"Introduction to greenfeedr","text":"package provides daily final datasets explore basic format GreenFeed data. data provided actual data 32-cow study.","code":"# Open the daily data downloaded from C-Lock Inc. server daily_data <- readr::read_csv(system.file(\"extdata\", \"StudyName_GFdata.csv\", package = \"greenfeedr\"), show_col_types = FALSE) # View the structure of the daily data str(daily_data) #> spc_tbl_ [256 × 21] (S3: spec_tbl_df/tbl_df/tbl/data.frame) #> $ FeederID : num [1:256] 1 1 1 1 1 1 1 1 1 1 ... #> $ AnimalName : chr [1:256] \"\\\"000000000840003250681664\\\"\" \"\\\"000000000840003250681664\\\"\" \"\\\"000000000840003250681799\\\"\" \"\\\"000000000840003250681664\\\"\" ... #> $ RFID : chr [1:256] \"000000000840003250681664\" \"000000000840003250681664\" \"000000000840003250681799\" \"000000000840003250681664\" ... #> $ StartTime : chr [1:256] \"5/13/24 9:33\" \"5/13/24 10:25\" \"5/13/24 12:29\" \"5/13/24 13:06\" ... #> $ EndTime : chr [1:256] \"5/13/24 9:36\" \"5/13/24 10:32\" \"5/13/24 12:45\" \"5/13/24 13:12\" ... #> $ GoodDataDuration : 'hms' num [1:256] 00:02:31 00:06:09 00:10:21 00:04:00 ... #> ..- attr(*, \"units\")= chr \"secs\" #> $ CO2GramsPerDay : num [1:256] 10531 14032 9242 14735 20080 ... #> $ CH4GramsPerDay : num [1:256] 466 577 301 498 756 ... #> $ O2GramsPerDay : num [1:256] 6815 8799 6173 10636 11021 ... #> $ H2GramsPerDay : num [1:256] 0 0 0 0 0 0 0 0 0 0 ... #> $ H2SGramsPerDay : num [1:256] 0 0 0 0 0 0 0 0 0 0 ... #> $ AirflowLitersPerSec : num [1:256] 34 34 33.9 33.8 33.7 ... #> $ AirflowCf : num [1:256] 1.07 1.07 1.07 1.07 1.07 ... #> $ WindSpeedMetersPerSec : num [1:256] 0.0185 0.0686 0.0682 0.1345 0.1094 ... #> $ WindDirDeg : num [1:256] 27.3 314.5 58 42.1 35.4 ... #> $ WindCf : num [1:256] 1 1.01 1.01 1.03 1.02 ... #> $ WasInterrupted : logi [1:256] NA NA NA NA NA NA ... #> $ InterruptingTags : chr [1:256] \"\\\"\\\"\" \"\\\"\\\"\" \"\\\"\\\"\" \"\\\"\\\"\" ... #> $ TempPipeDegreesCelsius: num [1:256] 17.2 19 21.9 22.3 22.6 ... #> $ IsPreliminary : num [1:256] 1 1 1 1 1 1 1 1 1 1 ... #> $ RunTime : chr [1:256] \"6/27/24 0:54\" \"6/27/24 0:54\" \"6/27/24 0:54\" \"6/27/24 0:54\" ... #> - attr(*, \"spec\")= #> .. cols( #> .. FeederID = col_double(), #> .. AnimalName = col_character(), #> .. RFID = col_character(), #> .. StartTime = col_character(), #> .. EndTime = col_character(), #> .. GoodDataDuration = col_time(format = \"\"), #> .. CO2GramsPerDay = col_double(), #> .. CH4GramsPerDay = col_double(), #> .. O2GramsPerDay = col_double(), #> .. H2GramsPerDay = col_double(), #> .. H2SGramsPerDay = col_double(), #> .. AirflowLitersPerSec = col_double(), #> .. AirflowCf = col_double(), #> .. WindSpeedMetersPerSec = col_double(), #> .. WindDirDeg = col_double(), #> .. WindCf = col_double(), #> .. WasInterrupted = col_logical(), #> .. InterruptingTags = col_character(), #> .. TempPipeDegreesCelsius = col_double(), #> .. IsPreliminary = col_double(), #> .. RunTime = col_character() #> .. ) #> - attr(*, \"problems\")= # View the first few rows of the daily data head(daily_data) #> # A tibble: 6 × 21 #> FeederID AnimalName RFID StartTime EndTime GoodDataDuration CO2GramsPerDay #>