nextflow.config

manifest {
    name = 'DivAssociate'
    author = 'Manuel Feser <feser@ipk-gatersleben.de>'
    homePage = 'https://github.com/IPK-BIT/divassociate'
    description = 'A simple GWAS pipeline'
    version = '0.1.0'
    nextflowVersion = '>24.04.2'
}

params {
    // Input options
    samples = null
    vcf = null
    phenotypes = null
    covariates = null

    // Boilerplate options
    outdir = './'
    publish_dir_mode = 'copy'
    email = null
    email_on_fail = null
    plaintext_email = false
    monochrome_logs = false
    validate_params = true
    version = false
    monochrome_logs = false
    nextflow_cli_args = []
    hook_url = null
}

process {
    withLabel: medium {
        cpus = 14
        memory = 32.GB
    }

    withLabel: large {
        cpus = 28
        memory = 64.GB
    }
    withLabel: tiny {
        cpus = 1
        memory = 2.GB
    }
}

docker {
    enabled = true
}

report {
    overwrite = true
}

dag {
    overwrite = true
}

timeline {
    overwrite = true
}

process {
    withLabel: medium {
        cpus = 14
        memory = 32.GB
    }

    withLabel: large {
        cpus = 28
        memory = 64.GB
    }
    withLabel: tiny {
        cpus = 1
        memory = 2.GB
    }
}