More generic information extraction in svdb query

[henrikstranneheim]

For instance:

svdb query -name decipher_ -info OCCURENCES,FREQUENCY

would yield decipher_OCCURENCES=X & decipher_FREQUENCY=Y in the INFO field.

These are to specific:
--hit_tag HIT_TAG the tag used to describe the number of hits within the
info field of the output vcf(default=OCC)
--frequency_tag FREQUENCY_TAG
the tag used to describe the frequency of the
variant(defualt=FRQ)

and does not match for instance
CLASS=Benign from the benign db

It would also enable to extract any number of INFO fields from the same database and make them unique in the output vcf.

And you can also merge the clingen_cgh_benign and clingen_cgh_pathogenic db into one and record the status in CLASS

[J35P312]

Thanks, I'll work on that!