From ab96a604f7453c86cfd8e987abd9416cda2c7657 Mon Sep 17 00:00:00 2001 From: JLSteenwyk Date: Tue, 24 Oct 2023 15:31:34 -0700 Subject: [PATCH] testing updated versions for python and biopython --- .github/workflows/ci.yml | 8 ++++---- README.md | 2 -- requirements.txt | 18 ++++++++++++++---- setup.py | 8 +++----- 4 files changed, 21 insertions(+), 15 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index d6e904c..5cde8c7 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -5,7 +5,7 @@ jobs: runs-on: macos-latest strategy: matrix: - python-version: [3.6, 3.7, 3.8] + python-version: ["3.9", "3.10"] steps: - uses: actions/checkout@master - name: Set up Python ${{ matrix.python-version }} @@ -30,13 +30,13 @@ jobs: test-full: runs-on: macos-latest env: - PYTHON: '3.9' + PYTHON: "3.10" steps: - uses: actions/checkout@master - name: Setup Python uses: actions/setup-python@master with: - python-version: 3.9 + python-version: "3.10" - name: Install dependencies run: | pip install -r requirements.txt @@ -94,4 +94,4 @@ jobs: with: GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} BRANCH: gh-pages - FOLDER: docs/_build/html \ No newline at end of file + FOLDER: docs/_build/html diff --git a/README.md b/README.md index d39d129..9c0e931 100644 --- a/README.md +++ b/README.md @@ -33,11 +33,9 @@ -
- Support me on Patreon

diff --git a/requirements.txt b/requirements.txt index 4737783..813e616 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,4 +1,14 @@ -biopython>=1.79 -numpy>=1.19.5 -tqdm>=4.56.0 -cython +biopython==1.81 +coverage==7.3.2 +Cython==3.0.4 +exceptiongroup==1.1.3 +iniconfig==2.0.0 +mock==5.1.0 +numpy==1.24.0 +packaging==23.2 +pluggy==1.3.0 +pytest==7.4.2 +pytest-cov==4.1.0 +pytest-mock==3.0.0 +tomli==2.0.1 +tqdm==4.66.1 diff --git a/setup.py b/setup.py index d722775..c30c543 100644 --- a/setup.py +++ b/setup.py @@ -12,14 +12,12 @@ 'Operating System :: OS Independent', 'Intended Audience :: Science/Research', 'Programming Language :: Python', - 'Programming Language :: Python :: 3.6', - 'Programming Language :: Python :: 3.7', - 'Programming Language :: Python :: 3.8', 'Programming Language :: Python :: 3.9', + 'Programming Language :: Python :: 3.10', 'Topic :: Scientific/Engineering', ] -REQUIRES = ["biopython>=1.79", "numpy>=1.19.5", "tqdm>=4.56.0", "cython"] +REQUIRES = ["biopython>=1.81", "numpy>=1.24.0", "tqdm>=4.66.1", "cython"] setup( name="orthofisher", @@ -40,4 +38,4 @@ ## push new version to pypi # rm -rf dist # python3 setup.py sdist bdist_wheel --universal -# twine upload dist/* -r pypi \ No newline at end of file +# twine upload dist/* -r pypi