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DESCRIPTION
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Package: mmgenome2
Type: Package
Title: Tools for extracting individual genomes from metagenomes
Description: mmgenome: a toolbox for extracting individual genomes from metagenomes.
Version: 2.2.1
Date: 2018-01-01
Encoding: UTF-8
Authors@R: c(
person(
"Mads", "Albertsen",
role = c("aut", "cre"),
email = "[email protected]",
comment = c(ORCID = "0000-0002-6151-190X")),
person(
c("Kasper", "Skytte"), "Andersen",
role = c("aut"),
email = "[email protected]",
comment = c(ORCID = "0000-0002-5423-0958")),
person(
c("Rasmus", "Hansen"), "Kirkegaard",
role = c("aut"),
email = "[email protected]",
comment = c(ORCID = "0000-0003-3349-3617")),
person(
c("Søren", "Michael"), "Karst",
role = c("aut"),
email = "[email protected]",
comment = c(ORCID = "0000-0002-0233-160X")))
Maintainer: Kasper Skytte Andersen <[email protected]>
Reference: Albertsen, M., Hugenholtz, P., Skarshewski, A., Nielsen, K. L.,
Tyson, G. W., & Nielsen, P. H. (2013). Genome sequences of rare, uncultured
bacteria obtained by differential coverage binning of multiple metagenomes.
Nature biotechnology, 31(6), 533-8. doi:10.1038/nbt.2579
License: AGPL-3 + file LICENSE
BugReports: https://github.com/kasperskytte/mmgenome2/issues
LazyData: true
LazyDataCompression: bzip2
Depends:
R (>= 3.3),
ggplot2 (>= 3.0.0)
Imports:
tidyverse,
sp,
data.table,
cowplot,
magrittr,
dplyr,
Biostrings,
digest,
igraph,
ggrepel,
tibble,
tidyr,
stringr,
purrr,
rlang,
plyr,
forcats
remotes:
github::kasperskytte/Rtsne@openmp,
bioc::Biostrings
RoxygenNote: 7.1.2
VignetteBuilder: knitr
Suggests:
testthat,
knitr,
vegan,
shiny,
Rtsne,
rstudioapi,
clipr,
plotly
URL: https://kasperskytte.github.io/mmgenome2