NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method(plot,epinow)
S3method(plot,estimate_infections)
S3method(plot,estimate_secondary)
S3method(plot,estimate_truncation)
S3method(summary,epinow)
S3method(summary,estimate_infections)
export(R_to_growth)
export(add_day_of_week)
export(adjust_infection_to_report)
export(backcalc_opts)
export(bootstrapped_dist_fit)
export(calc_CrI)
export(calc_CrIs)
export(calc_summary_measures)
export(calc_summary_stats)
export(clean_nowcasts)
export(construct_output)
export(convert_to_logmean)
export(convert_to_logsd)
export(copy_results_to_latest)
export(country_map)
export(create_backcalc_data)
export(create_clean_reported_cases)
export(create_gp_data)
export(create_initial_conditions)
export(create_obs_model)
export(create_rt_data)
export(create_shifted_cases)
export(create_stan_args)
export(create_stan_data)
export(delay_opts)
export(dist_fit)
export(dist_skel)
export(epinow)
export(estimate_delay)
export(estimate_infections)
export(estimate_secondary)
export(estimate_truncation)
export(estimates_by_report_date)
export(expose_stan_fns)
export(extract_CrIs)
export(extract_inits)
export(extract_stan_param)
export(forecast_infections)
export(forecast_secondary)
export(gamma_dist_def)
export(get_dist)
export(get_generation_time)
export(get_incubation_period)
export(get_raw_result)
export(get_regional_results)
export(get_regions)
export(get_regions_with_most_reports)
export(global_map)
export(gp_opts)
export(growth_to_R)
export(lognorm_dist_def)
export(make_conf)
export(map_prob_change)
export(obs_opts)
export(opts_list)
export(plot_estimates)
export(plot_summary)
export(regional_epinow)
export(regional_runtimes)
export(regional_summary)
export(report_cases)
export(report_plots)
export(report_summary)
export(rstan_opts)
export(rstan_sampling_opts)
export(rstan_vb_opts)
export(rt_opts)
export(sample_approx_dist)
export(save_estimate_infections)
export(save_forecast_infections)
export(save_input)
export(secondary_opts)
export(setup_default_logging)
export(setup_dt)
export(setup_future)
export(setup_logging)
export(setup_target_folder)
export(simulate_cases)
export(simulate_infections)
export(stan_opts)
export(summarise_key_measures)
export(summarise_results)
export(theme_map)
export(trunc_opts)
export(tune_inv_gamma)
export(update_horizon)
export(update_list)
import(Rcpp)
import(methods)
importFrom(R.utils,withTimeout)
importFrom(cowplot,get_legend)
importFrom(cowplot,panel_border)
importFrom(cowplot,theme_cowplot)
importFrom(data.table,":=")
importFrom(data.table,.N)
importFrom(data.table,as.data.table)
importFrom(data.table,copy)
importFrom(data.table,data.table)
importFrom(data.table,dcast)
importFrom(data.table,fifelse)
importFrom(data.table,frollmean)
importFrom(data.table,frollsum)
importFrom(data.table,fwrite)
importFrom(data.table,melt)
importFrom(data.table,merge.data.table)
importFrom(data.table,rbindlist)
importFrom(data.table,setDT)
importFrom(data.table,setDTthreads)
importFrom(data.table,setcolorder)
importFrom(data.table,setnames)
importFrom(data.table,setorder)
importFrom(data.table,setorderv)
importFrom(data.table,shift)
importFrom(futile.logger,appender.file)
importFrom(futile.logger,appender.tee)
importFrom(futile.logger,flog.appender)
importFrom(futile.logger,flog.debug)
importFrom(futile.logger,flog.error)
importFrom(futile.logger,flog.fatal)
importFrom(futile.logger,flog.info)
importFrom(futile.logger,flog.threshold)
importFrom(futile.logger,flog.trace)
importFrom(futile.logger,flog.warn)
importFrom(futile.logger,ftry)
importFrom(future,availableCores)
importFrom(future,plan)
importFrom(future,tweak)
importFrom(future.apply,future_lapply)
importFrom(ggplot2,.data)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_cartesian)
importFrom(ggplot2,coord_sf)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,expand_limits)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_col)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_linerange)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_ribbon)
importFrom(ggplot2,geom_sf)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggplot_build)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_x_date)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_minimal)
importFrom(ggplot2,waiver)
importFrom(lifecycle,deprecate_soft)
importFrom(lubridate,days)
importFrom(lubridate,wday)
importFrom(patchwork,plot_layout)
importFrom(progressr,progressor)
importFrom(progressr,with_progress)
importFrom(purrr,compact)
importFrom(purrr,keep)
importFrom(purrr,map)
importFrom(purrr,map2_dbl)
importFrom(purrr,map_chr)
importFrom(purrr,map_dbl)
importFrom(purrr,map_dfc)
importFrom(purrr,quietly)
importFrom(purrr,reduce)
importFrom(purrr,safely)
importFrom(purrr,transpose)
importFrom(purrr,walk)
importFrom(rlang,abort)
importFrom(rlang,cnd_muffle)
importFrom(rstan,expose_stan_functions)
importFrom(rstan,extract)
importFrom(rstan,sampling)
importFrom(rstan,sflist2stanfit)
importFrom(rstan,stanc)
importFrom(rstan,summary)
importFrom(rstan,vb)
importFrom(runner,mean_run)
importFrom(scales,comma)
importFrom(stats,glm)
importFrom(stats,lm)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,pexp)
importFrom(stats,pgamma)
importFrom(stats,plnorm)
importFrom(stats,quantile)
importFrom(stats,quasipoisson)
importFrom(stats,rexp)
importFrom(stats,rgamma)
importFrom(stats,rlnorm)
importFrom(stats,rnorm)
importFrom(stats,rpois)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,var)
importFrom(truncnorm,rtruncnorm)
importFrom(utils,capture.output)
importFrom(utils,tail)
useDynLib(EpiNow2, .registration=TRUE)