_pkgdown.yml

url: https://kevinsee.github.io/DABOM/
template:
  params:
    bootswatch: sandstone
navbar:
  title: ~
  type: default
  structure:
    left:
    - home
    - intro
    - reference
    - articles
    - tutorials
    - news
    right: github
  components:
    reference:
      text: Functions
      href: reference/index.html
    news:
      text: News
      href: news/index.html
reference:
- title: Writing JAGS Model
  desc: |
    Functions for writing and updating the JAGS .txt model file
- contents:
  - writeDABOM
  - fixNoFishNodes
- title: JAGS Inputs
  desc: |
    Functions to prepare JAGS Inputs
- contents:
  - setInitialValues
  - createJAGSinputs
  - addTimeVaryData
  - setSavedParams
- title: Summarizing Results
  desc: |
    Functions related to summarizing detection, movement and escapement estimates
- contents:
  - extractDetectPost
  - extractTransPost
  - compileTransProbs
  - summariseDetectProbs
  - summarisePost
  - calcAbundPost
- title: Internal Functions
  desc: |
    These functions are used internally, within other functions
- contents:
  - createDABOMcapHist
  - createDirichletVector
  - createNodeList
  - defineDabomColNms
  - estMode
  - setBranchNums