envo.md

layout	id	contact	description	domain	homepage	page	license	publications	products	title	dependencies	usages	jobs	build	tracker	activity_status
ontology_detail	envo	email label github [email protected] Pier Luigi Buttigieg pbuttigieg	Ontology of environmental features and habitats	environment	http://environmentontology.org/	https://github.com/EnvironmentOntology/envo	url label http://creativecommons.org/licenses/by/3.0/ CC-BY	id title http://www.dx.doi.org/10.1186/2041-1480-4-43 The environment ontology: contextualising biological and biomedical entities id title https://doi.org/10.1186/s13326-016-0097-6 The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation	id title envo.owl main ENVO OWL release id title envo.json ENVO in obographs JSON format id title envo.obo ENVO in OBO Format. May be lossy id title subsets/envo-basic.obo OBO-Basic edition of ENVO id title subsets/envoEmpo.owl Earth Microbiome Project subset id title homepage subsets/EnvO-Lite-GSC.obo GSC Lite subset of ENVO http://environmentontology.org/downloads	Environment Ontology	id uberon id pco id ro id chebi id ncbitaxon	user description example http://oceans.taraexpeditions.org/en/ Samples collected during Tara Oceans expedition are annotated with ENVO url description https://www.ebi.ac.uk/metagenomics/projects/ERP001736/samples/ERS487899 Sample collected during the Tara Oceans expedition (2009-2013) at station TARA_004 (latitudeN=36.5533, longitudeE=-6.5669) user description example https://www.ncbi.nlm.nih.gov/ Annotation of habitats of microbes url description https://www.ncbi.nlm.nih.gov/nuccore/NC_016642 Annotation of habitat of Pseudovibrio sp. FO-BEG1 to marine environment	id type https://travis-ci.org/EnvironmentOntology/envo travis-ci	checkout email_cc system path method infallible git clone https://github.com/EnvironmentOntology/envo.git [email protected] git . vcs 1	https://github.com/EnvironmentOntology/envo/issues/	active

EnvO is a community ontology for the concise, controlled description of environments.

Envo can be cited as:

Buttigieg, P. L., Morrison, N., Smith, B., Mungall, C. J., & Lewis, S. E. (2013). The environment ontology: contextualising biological and biomedical entities. Journal of Biomedical Semantics, 4(1), 43. doi:10.1186/2041-1480-4-43

Or for latest developments:

Buttigieg, P. L., Pafilis, E., Lewis, S. E., Schildhauer, M. P., Walls, R. L., & Mungall, C. J. (2016). The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation. Journal of Biomedical Semantics, 7(1), 57. doi:10.1186/s13326-016-0097-6