diff --git a/_data/tool_and_resource_list.yml b/_data/tool_and_resource_list.yml index 3ae47e3a..b31e1ddd 100644 --- a/_data/tool_and_resource_list.yml +++ b/_data/tool_and_resource_list.yml @@ -793,6 +793,7 @@ name: Pathogens Portal registry: fairsharing: a085b2 + tess: Pathogens Portal url: https://www.pathogensportal.org - description: The European Health Data Space is a health specific ecosystem comprised of rules, common standards and practices, infrastructures and a governance framework that aims at empowering individuals through increased digital access to and control of their electronic personal health data, at national level and EU-wide. id: ehds @@ -865,31 +866,42 @@ registry: tess: Quarto url: https://quarto.org/ -- description: Bcftools is a set of tools for working with variant calls in the VCF format. +- description: Bcftools is a set of tools for working with variant calls in the VCF format. id: bcftools name: Bcftools + registry: + biotools: bcftools url: https://samtools.github.io/bcftools/bcftools.html - description: Qualimap is a quality control tool that assesses the quality of the sequencing data at different stages of the analysis pipeline, including read mapping, coverage, and expression analysis. id: qualimap name: Qualimap + registry: + biotools: qualimap url: http://qualimap.conesalab.org/ - description: GATK is a widely used tool for variant calling and genotyping from NGS data. id: gatk name: Genome Analysis Toolkit (GATK) + registry: + biotools: gatk url: https://gatk.broadinstitute.org/hc/en-us - description: Picard is a suite of tools that provides quality control and processing of NGS data, including duplicate read removal, format conversion, and alignment. id: picard name: Picard + registry: + biotools: picard_tools url: https://broadinstitute.github.io/picard/ - description: Trimmomatic is a tool used for the removal of adapter sequences, low-quality reads, and sequences with ambiguous bases from NGS data. id: trimmomatic name: Trimmomatic + registry: + biotools: trimmomatic + tess: Trimmomatic url: http://www.usadellab.org/cms/?page=trimmomatic - description: FastQ Screen is a quality control tool used to detect contamination in sequencing data (FASTQ files). id: fastqc-screen name: FastQC Screen url: https://www.bioinformatics.babraham.ac.uk/projects/fastq_screen/ -- description: GRAF pop is a software tool that infers the subject ancestry. +- description: GRAF pop is a software tool that infers the subject ancestry. id: graf-pop name: GRAF pop url: https://pubmed.ncbi.nlm.nih.gov/31151998/