Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

setup not working #2

Open
debsankha opened this issue Jan 26, 2017 · 0 comments
Open

setup not working #2

debsankha opened this issue Jan 26, 2017 · 0 comments

Comments

@debsankha
Copy link
Member

The setup process fails, with the following output:

Source configuration in setup_cluster_conf.sh ...

Queueing system settings already sourced.

Create Python virtual environment...
/usr/nld/python-3.4.3b-cluster/bin/pyvenv /home/dmanik/venvs/d3t

Modify virtual environment in /home/dmanik/venvs/d3t/bin/activate...
76a77,101
> 
> # Manual additions
> CLUSTERNAME=`hostname | grep -o "[[:alpha:]]*"`
> 
> # C Compiler
> export CC=/usr/nld/gcc-4.7.2/bin/gcc
> export PATH=/usr/nld/gcc-4.7.2/bin:${PATH}
> export LD_LIBRARY_PATH=/usr/nld/gcc-4.7.2/lib64:/usr/nld/mpc-1.0.1/lib:/usr/nld/mpfr-3.1.1/lib:/usr/nld/gmp-5.0.5/lib:${LD_LIBRARY_PATH}
> 
> # ATLAS
> ATLAS_CLUSTER=$([ $CLUSTERNAME = login ] && echo "skadi" || echo $CLUSTERNAME)
> ATLAS_PREFIX=/usr/nld/atlas-3.8.4-${ATLAS_CLUSTER}-seq
> export LD_LIBRARY_PATH=${ATLAS_PREFIX}/lib:${LD_LIBRARY_PATH}
> 
> # Queueing system settings
> [[ ${CLUSTERNAME} = login ]] && [[ ${SGE_CLUSTER_NAME} != NLD ]] && source /core/ge/NLD/common/settings.sh
> 
> # DRMAA
> export DRMAA_LIBRARY_PATH=/core/ge/lib/linux-x64/libdrmaa.so
> 
> # GridMap
> export SMTP_SERVER=mailer.nld.ds.mpg.de
> export CREATE_PLOTS=False
> export ERROR_MAIL_SENDER=$USER@nld.ds.mpg.de
> export ERROR_MAIL_RECIPIENT=$USER@nld.ds.mpg.de

Source virtual environment...
source /home/dmanik/venvs/d3t/bin/activate
setup_cluster_scipy.sh: line 59: pip>=9: command not found

The bug is traceable to this commit:
(56a4aa5)

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant