Logs remove .. from relative paths

[christophhillisch]

In the log file relative paths seem to be shortened for all entries except the command line entry in line 2.
After the Command line entry, every other one is missing the .. from the paths.

12:44:50 Started REINVENT 4.5.11 (C) AstraZeneca 2017, 2023 on 2025-01-23
12:44:50 Command line: /usr/local/bin/reinvent -l ../output/reinvent.log ../input/config.toml
12:44:50 Reading run configuration from /input/config.toml using format toml

Another example:

12:35:19 Started REINVENT 4.5.11 (C) AstraZeneca 2017, 2023 on 2025-01-23
12:35:19 Command line: /usr/local/bin/reinvent -l ../output/reinvent.log ../input/config.toml
12:35:19 Reading run configuration from /input/config.toml using format toml
12:35:19 User root on host a830f92ae173
12:35:19 Python version 3.10.16
12:35:19 PyTorch version 2.2.1+rocm5.7, git 6c8c5ad5eaf47a62fafbb4a2747198cbffbf1ff0
12:35:19 PyTorch compiled with CUDA version None
12:35:19 RDKit version 2023.09.5
12:35:19 Platform Linux-5.15.167.4-microsoft-standard-WSL2-x86_64-with-glibc2.36
12:35:19 Number of PyTorch CUDA devices 0
12:35:19 Using CPU
12:35:19 Writing JSON config file to /output/tl_input.json
12:35:19 Starting Transfer Learning
12:35:19 /input/reinvent.prior has valid hash:

[halx]

Hi,

paths should be transformed to absolute pathnames. Not sure why that does not work for you. WSL?

Cheers,
Hannes.

[christophhillisch]

Hi Hannes,
I'm running this in a python:3.10-slim-based docker container. No WSL.

[halx]

Where in your container are those directories located?

Your platform is reported as Linux-5.15.167.4-microsoft-standard-WSL2-x86_64-with-glibc2.36

[christophhillisch]

They are on the same level as the reinvent folder containing the Git Repository

home
  .reinvent
  .input
  .output

[halx]

I simply do not know why that happens in your container. It's working just fine in all cases I have seen otherwise.