diff --git a/docs/_Software-Development/02-toolsurvey.md b/docs/_Software-Development/02-toolsurvey.md index 067ae62..5e758dc 100644 --- a/docs/_Software-Development/02-toolsurvey.md +++ b/docs/_Software-Development/02-toolsurvey.md @@ -18,6 +18,7 @@ In the meantime, browse our tools below and find more [recommendations for resou ## Applications --- + ### checkM2 (EMBL) Assessing the quality of metagenome-derived genome bins using machine learning @@ -28,6 +29,17 @@ License: [GPL 3.0](https://opensource.org/license/gpl-3-0/) Link: [https://github.com/chklovski/CheckM2](https://github.com/chklovski/CheckM2) +### The Cloud-based Workflow Manager - CloWM (BIBI) +The Cloud-based Workflow Manager (CloWM /klaʊm/) offers the seamless integration of (1) curated, scientific workflows written in the Nextflow DSL, (2) robust data storage, (3) a highly scalable compute layer for data-intensive analysis tasks and a (4) user-friendly interface. The CloWM platform is completely open-source and can be used free-of-charge. +The CloWM platform already contains several curated, best-practice workflows that cover a broad range of research fields/tasks, such as metagenomics (WGS and 16S), human-variation-analysis, infectious diseases (SARS-CoV2, Mpox, Influenza A+B), meta-barcoding, genome assembly, transcriptomics, basecalling, phylogenomics, … +Some of these workflows are exclusively available on CloWM. + +operating system: Platform independent + +License: [Apache 2](https://www.apache.org/licenses/LICENSE-2.0.txt) + +Link: [https://clowm.bi.denbi.de](https://clowm.bi.denbi.de) + ### Eggnog mapper (EMBL) Fast genome-wide functional annotation through orthology assignment