🐛 batch not found

[enryH]

Hey, when trying to install the package, pip cannot resolve the requirement batch. Which package is it you require?

ukb_common/setup.py

Line 35 in c46cac7

install_requires=['hail', 'batch'],

I guess it is for the batch_client import?

ukb_common/utils/saige_pipeline.py

Line 344 in c46cac7

import batch_client

I got to this error when trying to follow the instructions on the PAN project documentation: here

and I try to install it typing:

pip install git+https://github.com/Nealelab/ukb_common.git

resulting in

ERROR: Could not find a version that satisfies the requirement batch (from ukbb-common) (from versions: none)
ERROR: No matching distribution found for batch

[enryH]

I guess this is due to your typo. So without installing and downloading the repo twice if works:

%%bash
git clone https://github.com/atgu/ukbb_pan_ancestry
git clone https://github.com/Nealelab/ukb_common 
git clone https://github.com/Nealelab/ukb_common ukbb_common