diff --git a/01_opening_and_understanding.html b/01_opening_and_understanding.html index e1499e3..d8d9a89 100644 --- a/01_opening_and_understanding.html +++ b/01_opening_and_understanding.html @@ -391,11 +391,36 @@

Contents

01: Opening and understanding#

-
#library(IRdisplay)
-#display_html('<iframe width="560" height="315" src="https://www.youtube.com/embed/699jkjLJGyM" frameborder="0" allowfullscreen></iframe>')
+
# Replace "VIDEO_ID_HERE" with the actual ID of the YouTube video
+video_id <- "Xer1XBm3sns"
+
+# Create the YouTube video URL
+video_url <- paste0("https://www.youtube.com/watch?v=", video_id)
+
+# Create a hyperlink to the YouTube video
+video_link <- paste0("<a href='", video_url, "'>Link to YouTube Video</a>")
+
+# Display the hyperlink
+display_html(video_link)
+
+
+
+
+
Error in display_html(video_link): could not find function "display_html"
+Traceback:
+
+
+
+
+
+
+
library(IRdisplay)
+display_html('<iframe width="560" height="315" src="https://youtu.be/Xer1XBm3sns?si=GqPeXjDlu8RJD8Lb" frameborder="0" allowfullscreen></iframe>')
 
+
+

In this notebook we will go through how to open a NetCDF file in R. We will also try to understand the file and extract the data and metadata from it.

Firstly, let’s import the modules that we will work with.

@@ -811,6 +836,9 @@

Variables +
[1] "Size of dimensions of 2D anom array"
+
+
@@ -908,73 +936,447 @@

Variables -

A matrix: 72 × 36 of type dbl
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
A matrix: 72 × 36 of type dbl
NA NA NA-0.09-0.4774149-0.28590867-0.147390142 0.162335649 0.3555031419 0.0853288400.9572873 2.7277462 1.795067 1.0600646 0.9244725 0.901413739 0.7911479 1.0034733 NANA
NA NA NA NA-0.5136998-0.28014940-0.160545558 0.158801332 0.3941240311 0.1554638890.7803320 2.8799996 2.655742 2.0247676 2.4968357 0.878529668 0.6843208 0.8648409 NANA
NA NA NA 0.30-0.4267291-0.27559584-0.183748201 0.202584669 0.4098227322 0.2115975171.1051872 2.7000260 3.316797 3.3139091 6.5279703 1.357819557 0.7310358 0.5478907 NANA
NA NA NA NA-0.2727111-0.23345284-0.168438852 0.203091472 0.3795720339 0.1547373831.1962049 1.5803304 4.079368 2.4789727 5.1615229 4.826246738 0.8632154-0.7200000 NANA
NA NA NA NA-0.1808161-0.16997650-0.113978557 0.188084275 0.3441761434 0.1556928161.5916607 0.6660571 5.440616 2.8465347 3.7294011 4.428432941 0.8453974 NA NANA
NA NA NA NA-0.1048512-0.08315404-0.078388907 0.161499396 0.3325377405 0.2421529141.3523049 3.2296455 6.082641 6.5513883 7.1897578 3.872640371 0.7872372-0.9600000 NANA
NA NA NA NA-0.2039971-0.03734734-0.050673340 0.083849691 0.2672915161 0.3200768831.2378309 3.4596205 6.688095 8.1772079 7.9278369 3.297797918 0.7249542 NA NANA
NA NA 2.24 NA 0.4100000 0.04984033-0.030647313 0.002807403 0.2073578984 0.0603833271.0983480 3.6145263 7.006868 8.3200865 7.6957769 2.810969353 0.2470920 NA NANA
NA NA NA 1.85 NA 0.09618616-0.021199374-0.029650999-0.0445042588-0.0360179801.8151871 5.7194242 7.489800 8.2420597 7.5445147 1.702046871 0.3923281 NA NANA
NA NA NA NA 0.0800000 0.09327671 0.001323494-0.059333336-0.1571347415-0.1771692632.0461519 5.5822577 7.721563 8.3688650 7.5512500 2.840023041 0.4435947 NA NANA
NA NA NA NA NA 0.10112605 0.023530630-0.102159321-0.1461249292-0.3156257272.3329496 5.2566156 7.872991 8.2446203 6.9870377 4.032630920 0.8986476 NA NANA
NA NA NA NA NA 0.15525936 0.039516296-0.160253525-0.4670970440-0.6940613394.3591695 5.3242002 7.156808 7.2001529 6.7234974 4.168582439 NA NA5.44NA
NA NA NA NA 0.1200000 0.17133424 0.020352060-0.183834001-0.5728002191-0.8924338823.5030200 6.0381327 6.840115 6.3887873 6.9327917 4.684739113 NA NA NANA
NA NA NA 0.51-0.1045271 0.12875792 0.010437957-0.192575157-0.6314202547-1.0800383091.9361970 4.4810176 6.170854 5.7854176 5.9653182 4.766786575 NA NA NANA
NA NA NA NA NA 0.12464470 0.036503941-0.108508967-0.4493696690-0.9685895441.8712949 3.4052238 6.302463 5.9270997 6.3741350 3.730565071 5.4499998 NA NANA
NA-2.74-6.49 NA 0.2366797 0.18782446 0.133120105 0.082596302-0.3003827631-0.7513652442.1469994 3.8464892 5.916843 6.3851500 6.4738703 5.140623093 NA 2.2100000 NANA
NA NA NA NA NA 0.18006249 0.205805823 0.132874653-0.2052679509-0.6812006242.6520324 3.8627431 4.681370 6.7149715 7.6431904 8.325294495 2.4645054 NA NANA
-3.23 NA NA NA NA 0.21591021 0.297305465 0.191144824 0.0002424157-0.4752186831.5729918 3.1421788 3.056231 6.2712049 8.8811817 8.233824730 4.2742991 2.9200001 NANA
NA NA NA NA 1.4100000 0.24058017 0.389482826 0.454154611 0.3260739446-0.1302784091.1721898 1.9892517 4.083584 7.7274904 8.9799690 8.900437355 7.3149533 3.1400001 NANA
NA NA NA NA NA 0.08222742 0.462933093 0.622475207 0.6073665023 0.2006321401.4139801 1.8027588 2.745549 7.4859943 9.009973510.146947861 7.4159012 NA NANA
NA NA NA NA NA 0.22611250 0.510275364 0.726758242 0.6986377239 0.3182548282.4283347 1.5985538 2.620578 5.839755110.706704110.549728394 7.0739231 1.8500000 NANA
NA NA 1.25 NA NA 0.26540589 0.580444694 0.760604620 0.6664374471 0.2397194212.6909816 3.2365203 1.660322 6.376709511.3682051 9.817378998 6.7846031 NA NANA
NA NA NA NA 1.4400001 0.23749603 0.580396712 0.748356700 0.6247741580 0.1044428051.9244378 1.9029524 2.724763 8.6504669 9.4975271 7.550381184 5.2764120 NA NANA
NA NA NA NA NA 0.18075460 0.548415363 0.727091372 0.5926325321 0.1064045282.4785178 3.5415964 3.099287 6.4127460 9.1109905 7.136222363 3.9328668 NA NANA
NA NA 2.81 NA NA 0.16377415 0.523425102 0.596909940 0.3836425245 0.1623751072.8302016 3.0401354 3.149857 5.7515340 8.5855122 6.447008133 3.2445862 NA NANA
NA NA NA NA NA 0.15745857 0.393516779 0.449483484 0.2567939758 0.1809070413.3748968 2.8877025 3.324666 8.0333014 7.5390706 4.663214207 2.3414955 NA NANA
NA NA NA NA NA 0.09594598 0.209859416 0.192347363 0.1322625130 0.1194960552.9328752 4.0491333 3.670716 5.6424479 5.5709038 3.862676620 NA NA NANA
NA NA NA NA 0.5700000-0.01971135 0.086351745 0.022201179-0.0598816760 0.0093541721.2883152 2.4070759 3.116643 3.3065968 1.3663971 1.190155149-0.2100000 1.8000000 NANA
NA NA NA NA 0.0400000-0.05072745 0.079560325-0.014219291-0.2375546545-0.0145742891.0367877 1.1600000 2.320000 1.5100000-0.6620501-0.005278349 NA NA NANA
NA NA NA NA NA-0.01008736 0.107823193-0.026469907-0.4114962518 0.0904239120.8417667-1.3527929-1.477125-0.9154379-0.7692944-0.279117882-0.1200000 NA NANA
NA-1.28 NA-0.4698156-0.484841824 0.09154083 0.6440986395 0.86868376 1.36309803 1.814970611.23196691.09131396 0.6522085071 0.52465075-5.436241150-4.5521069-3.09999990 NA NANA
NA NA NA-0.3934032-0.431364000 0.14756560 0.5137752891 0.61684585 1.08714056 1.542632821.12220751.25820720 0.9412134290 0.69965726-5.388529778-3.2256734-2.76999998 NA NANA
NA-2.87 NA NA-0.414644599 0.16411288 0.3302588761 0.34657753 0.78035277 1.232452870.77967551.34756613 1.1005250216 0.42685211-3.570737123-1.3942188 NA NA NANA
NA NA NA NA-0.280095577 0.17187184 0.1874384582 0.13639207 0.44986501 0.777683500.40361150.90187240 0.6559444666-0.16429505-1.692900538-0.3730847 NA NA NANA
NA NA NA NA-0.268713385 0.12222777 0.0106154578-0.06838228 0.11478064 0.310414910.23446770.44264463 0.1042358428-1.29303682-1.633660436-0.9327446 1.82000005 NA NANA
NA-0.92 NA NA-0.197808459 0.11562244-0.0397457480-0.14111784-0.07678779-0.097379600.90990601.16355646 1.2394207716-1.14657307-1.999983311 1.0552218 1.53999996 NA NANA
NA-0.03 NA-0.5619973-0.124478303 0.22203135 0.1132662669-0.07467450-0.20421869-0.420117772.41000012.74000001 0.4900098443-0.49499625 0.268961966 2.1826148 2.40000010 0.6700000 NANA
NA NA NA NA-0.064553842 0.28961024 0.1855113804-0.09331908-0.28049749-0.453464362.26000003.00000000-0.0399999619 1.77955723 2.390084028 1.3966146 NA NA NANA
NA NA NA NA 0.014955498 0.37070805 0.2341449112-0.03662325-0.17936961-0.211004822.30000002.85999990 2.6600768566 4.73088789 3.017217636 0.2097187 1.55999994 NA NANA
NA NA NA-0.4620867 0.151447281 0.49756023 0.3641515374 0.17027101 0.09872701 0.156365603.03000002.63000011 4.0700082779 4.46887016 3.263908625 1.9812412-8.56999969 0.3200000 NANA
NA NA NA NA 0.220768183 0.60737258 0.4621249437 0.31238753 0.34462538 0.427488362.13000013.33999991 5.2585630417 5.04434347 4.643915176 1.7200259 NA NA NANA
NA NA NA NA 0.250222027 0.62426901 0.4832903743 0.44083375 0.49659431 0.568564953.64000014.28217030 6.2233800888 5.96999979 6.269999981 1.8399289-6.21999979 NA NANA
NA NA NA NA 0.136668548 0.56714785 0.4752582014 0.51889729 0.57429111 0.626320063.65358072.14575386 5.9827761650 NA NA 4.1399999-1.72000003-2.1800001 NANA
NA NA NA NA 0.097286239 0.47690770 0.4453872740 0.56508142 0.55497044 0.493222651.97829903.54007483 3.8028151989 NA 3.039999962 1.4100000-0.11851262-2.1099999 NANA
NA NA NA NA 0.009490349 0.41094211 0.4368603826 0.58647507 0.48691010 0.357133183.07590894.80000353 3.9606328011 3.91000009 3.099999905-0.6500000-2.15000010 NA NANA
NA NA NA 0.4600000-0.044147618 0.40844291 0.5009096265 0.52736115 0.55674899 0.441668632.81523284.57000017 4.1282920837 3.25530601 NA 0.3736914 NA NA NANA
NA NA NA 1.6100000-0.044302195 0.33518147 0.4985094666 0.48975295 0.35365939 1.247406961.20599403.00945592 2.3990960121 1.93532622 0.680000007-4.4299998-0.89999998-1.6400000 NANA
NA NA NA 0.8700000-0.225116432 0.14925167 0.4378926158 0.40267450 0.07255031-0.044564571.83859880.07792632 1.3569607735 1.65999997 NA 0.3300000 NA NA NANA
NA NA2.78 NA NA 0.05853839 0.4594276845 0.36315942-0.17322914-0.207915321.93924500.25425702 0.4623103738 1.67879176 1.897409081 NA 1.22000003 NA NANA
NA NA NA NA NA-0.51736933 0.4211530983 0.29534271-0.42727485-0.555699291.20385420.28530520 0.8195887208 1.55946314 1.503227830 1.0871487-0.12800276 NA NANA
NA NA NA NA NA-0.42621243 0.3630766273 0.41877541-0.13659766-0.303128420.80466930.69055551 1.0235382318 1.11682236-0.628074944-1.5977148-1.20875096 NA NANA
NA NA NA NA NA-0.16678715 0.2627283633 0.57024199 0.33911827 0.148979110.70987150.91861933 0.8771149516 0.85675263 0.784333229 0.5525564 0.04455871 NA NANA
NA NA NA NA-0.194812909-0.22618596 0.1277418733 0.42979327 0.35964090 0.311775060.70692810.64331269 0.4695768356 0.56522942 0.747213602 1.0081477 0.47750920 NA NANA
NA NA1.57 NA-0.130373791-0.22180483 0.0003080616 0.35777867 0.40363389 0.333340560.73668060.14018732 0.0000656803 0.26645169 0.239929050 NA 0.46911913 NA NANA
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NA NA NA NA-0.158705324-0.23096702-0.1192000657 0.35051736 0.65484744 0.513235990.77154140.12901822-0.0952277705-0.05363240 0.078593031 0.1726537 5.59999990 NA NANA
NA NA NA NA-0.120913103-0.20881623-0.0960118026 0.30507845 0.58462906 0.472047920.74758510.26955667-0.0668849200-0.20265251-0.004614398 0.5638793 NA 2.9200001-0.25NA
NA 0.47 NA NA-0.149685591-0.19056554-0.0408856384 0.30412224 0.44861937 0.257046910.59286070.39582220 0.2603332698-0.14342251 0.102634087 0.4348391 0.84614593 NA NANA
NA NA NA 0.8000000-0.259972930-0.20408601-0.0251651946 0.26172209 0.35818422 0.232276500.79172970.61566544 0.8431401253 0.48186198 0.462726474 0.6100513 0.92998093 NA NANA
-2.64 NA0.97 0.2700000-0.361352175-0.23032261-0.0848020315 0.20081067 0.32587203 0.113054671.02208411.14713442 1.6009719372 0.96171165 0.840205550 0.7000809 0.71420395 0.6590008 NANA
-

+
       [,1]  [,2]  [,3]       [,4]         [,5]         [,6]          [,7]
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+[11,]  6.987037659  4.032630920  0.89864761         NA    NA    NA
+[12,]  6.723497391  4.168582439          NA         NA  5.44    NA
+[13,]  6.932791710  4.684739113          NA         NA    NA    NA
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+[18,]  8.881181717  8.233824730  4.27429914  2.9200001    NA    NA
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+[59,]  0.680000007 -4.429999828 -0.89999998 -1.6400000    NA    NA
+[60,]           NA  0.330000013          NA         NA    NA    NA
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+[66,]  0.239929050           NA  0.46911913         NA    NA    NA
+[67,]  0.045474380           NA  0.44222745         NA    NA    NA
+[68,]  0.078593031  0.172653705  5.59999990         NA    NA    NA
+[69,] -0.004614398  0.563879251          NA  2.9200001 -0.25    NA
+[70,]  0.102634087  0.434839100  0.84614593         NA    NA    NA
+[71,]  0.462726474  0.610051274  0.92998093         NA    NA    NA
+[72,]  0.840205550  0.700080872  0.71420395  0.6590008    NA    NA
+
+
+

If you don’t know the variable name, you can use the index instead.

diff --git a/_sources/01_opening_and_understanding.ipynb b/_sources/01_opening_and_understanding.ipynb index 0e201b1..681ee1f 100644 --- a/_sources/01_opening_and_understanding.ipynb +++ b/_sources/01_opening_and_understanding.ipynb @@ -10,17 +10,57 @@ }, { "cell_type": "code", - "execution_count": 1, + "execution_count": 11, + "id": "bb1fe7bc-01e3-4024-a139-a06d37e80159", + "metadata": {}, + "outputs": [ + { + "data": { + "text/html": [ + "Link to YouTube Video" + ] + }, + "metadata": {}, + "output_type": "display_data" + } + ], + "source": [ + "# Replace \"VIDEO_ID_HERE\" with the actual ID of the YouTube video\n", + "video_id <- \"Xer1XBm3sns\"\n", + "\n", + "# Create the YouTube video URL\n", + "video_url <- paste0(\"https://www.youtube.com/watch?v=\", video_id)\n", + "\n", + "# Create a hyperlink to the YouTube video\n", + "video_link <- paste0(\"Link to YouTube Video\")\n", + "\n", + "# Display the hyperlink\n", + "display_html(video_link)" + ] + }, + { + "cell_type": "code", + "execution_count": 8, "id": "3c586abf-ffa4-4908-924e-8550999f155e", "metadata": { "vscode": { "languageId": "r" } }, - "outputs": [], + "outputs": [ + { + "data": { + "text/html": [ + "" + ] + }, + "metadata": {}, + "output_type": "display_data" + } + ], "source": [ - "#library(IRdisplay)\n", - "#display_html('')" + "library(IRdisplay)\n", + "display_html('')" ] }, { diff --git a/reports/01_opening_and_understanding.err.log b/reports/01_opening_and_understanding.err.log new file mode 100644 index 0000000..84d3833 --- /dev/null +++ b/reports/01_opening_and_understanding.err.log @@ -0,0 +1,38 @@ +Traceback (most recent call last): + File "/home/lukem/anaconda3/lib/python3.11/site-packages/jupyter_cache/executors/utils.py", line 58, in single_nb_execution + executenb( + File "/home/lukem/anaconda3/lib/python3.11/site-packages/nbclient/client.py", line 1305, in execute + return NotebookClient(nb=nb, resources=resources, km=km, **kwargs).execute() + ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ + File "/home/lukem/anaconda3/lib/python3.11/site-packages/jupyter_core/utils/__init__.py", line 173, in wrapped + return loop.run_until_complete(inner) + ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ + File "/home/lukem/anaconda3/lib/python3.11/asyncio/base_events.py", line 653, in run_until_complete + return future.result() + ^^^^^^^^^^^^^^^ + File "/home/lukem/anaconda3/lib/python3.11/site-packages/nbclient/client.py", line 705, in async_execute + await self.async_execute_cell( + File "/home/lukem/anaconda3/lib/python3.11/site-packages/nbclient/client.py", line 1058, in async_execute_cell + await self._check_raise_for_error(cell, cell_index, exec_reply) + File "/home/lukem/anaconda3/lib/python3.11/site-packages/nbclient/client.py", line 914, in _check_raise_for_error + raise CellExecutionError.from_cell_and_msg(cell, exec_reply_content) +nbclient.exceptions.CellExecutionError: An error occurred while executing the following cell: +------------------ +# Replace "VIDEO_ID_HERE" with the actual ID of the YouTube video +video_id <- "Xer1XBm3sns" + +# Create the YouTube video URL +video_url <- paste0("https://www.youtube.com/watch?v=", video_id) + +# Create a hyperlink to the YouTube video +video_link <- paste0("Link to YouTube Video") + +# Display the hyperlink +display_html(video_link) +------------------ + + +Error in display_html(video_link): could not find function "display_html" +Traceback: + + diff --git a/searchindex.js b/searchindex.js index fddd31d..034f84e 100644 --- a/searchindex.js +++ b/searchindex.js @@ -1 +1 @@ -Search.setIndex({"docnames": ["01_opening_and_understanding", "02_creating_plots", "03_extracting_data_to_different_formats", "04_creating_a_cfnetcdf_file", "intro"], "filenames": ["01_opening_and_understanding.ipynb", "02_creating_plots.ipynb", "03_extracting_data_to_different_formats.ipynb", "04_creating_a_cfnetcdf_file.ipynb", "intro.md"], "titles": ["01: Opening and understanding", 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