From 051d7164956391c61f5f79303a89fc767b4baff3 Mon Sep 17 00:00:00 2001
From: Skyler Kuhn <kuhnsa3@gmail.com>
Date: Sat, 28 Sep 2024 15:34:52 -0400
Subject: [PATCH] Adding novel miR identification option

---
 .github/workflows/main.yaml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/main.yaml b/.github/workflows/main.yaml
index 8fb2189..6074767 100644
--- a/.github/workflows/main.yaml
+++ b/.github/workflows/main.yaml
@@ -24,7 +24,8 @@ jobs:
         /opt2/.tests/WT_S3_1.fastq.gz \
         /opt2/.tests/WT_S4_R1.001.fastq.gz \
         --output /opt2/output --mode local \
-        --genome hg38 --dry-run
+        --genome hg38 --novel-mir-identification \
+        --dry-run
     - name: View the pipeline config file
       run: |
         echo "Generated config file for pipeline...." && cat $PWD/output/config.json