diff --git a/doc/doxygen/src/howto.hpp b/doc/doxygen/src/howto.hpp index 0751170..2dd9f83 100755 --- a/doc/doxygen/src/howto.hpp +++ b/doc/doxygen/src/howto.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /**\page snippets_page Snippets for PlastLibrary diff --git a/doc/doxygen/src/mainpage.hpp b/doc/doxygen/src/mainpage.hpp index 37d2d8b..f1cb8e2 100755 --- a/doc/doxygen/src/mainpage.hpp +++ b/doc/doxygen/src/mainpage.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \mainpage PlastLibrary Documentation diff --git a/doc/doxygen/src/todo.hpp b/doc/doxygen/src/todo.hpp index 369adb5..d14b4cf 100755 --- a/doc/doxygen/src/todo.hpp +++ b/doc/doxygen/src/todo.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /**\page todo_page Improvements for the future diff --git a/src/algo/core/api/IAlgoConfig.hpp b/src/algo/core/api/IAlgoConfig.hpp index c7af191..0a6c154 100755 --- a/src/algo/core/api/IAlgoConfig.hpp +++ b/src/algo/core/api/IAlgoConfig.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file IAlgoConfig.hpp diff --git a/src/algo/core/api/IAlgoEnvironment.hpp b/src/algo/core/api/IAlgoEnvironment.hpp index a3be277..9d17727 100755 --- a/src/algo/core/api/IAlgoEnvironment.hpp +++ b/src/algo/core/api/IAlgoEnvironment.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file IAlgoEnvironment.hpp diff --git a/src/algo/core/api/IAlgoEvents.hpp b/src/algo/core/api/IAlgoEvents.hpp index 0500195..ac34d18 100755 --- a/src/algo/core/api/IAlgoEvents.hpp +++ b/src/algo/core/api/IAlgoEvents.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file IAlgoEvents.hpp diff --git a/src/algo/core/api/IAlgoIndexator.hpp b/src/algo/core/api/IAlgoIndexator.hpp index 99d6d9c..41f549c 100755 --- a/src/algo/core/api/IAlgoIndexator.hpp +++ b/src/algo/core/api/IAlgoIndexator.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file IAlgoIndexator.hpp diff --git a/src/algo/core/api/IAlgoParameters.hpp b/src/algo/core/api/IAlgoParameters.hpp index 6f46cf8..2f734d2 100755 --- a/src/algo/core/api/IAlgoParameters.hpp +++ b/src/algo/core/api/IAlgoParameters.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file IAlgoParameters.hpp diff --git a/src/algo/core/api/IAlgorithm.hpp b/src/algo/core/api/IAlgorithm.hpp index f5dff08..704b492 100755 --- a/src/algo/core/api/IAlgorithm.hpp +++ b/src/algo/core/api/IAlgorithm.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file IAlgorithm.hpp diff --git a/src/algo/core/api/IDatabasesProvider.hpp b/src/algo/core/api/IDatabasesProvider.hpp index abfb7fe..a465baa 100755 --- a/src/algo/core/api/IDatabasesProvider.hpp +++ b/src/algo/core/api/IDatabasesProvider.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file IDatabasesProvider.hpp diff --git a/src/algo/core/api/IScoreMatrix.hpp b/src/algo/core/api/IScoreMatrix.hpp index be3dbbc..4f40873 100755 --- a/src/algo/core/api/IScoreMatrix.hpp +++ b/src/algo/core/api/IScoreMatrix.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file IScoreMatrix.hpp diff --git a/src/algo/core/impl/AbstractAlgorithm.cpp b/src/algo/core/impl/AbstractAlgorithm.cpp index 17fa4c0..9c499a0 100755 --- a/src/algo/core/impl/AbstractAlgorithm.cpp +++ b/src/algo/core/impl/AbstractAlgorithm.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/algo/core/impl/AbstractAlgorithm.hpp b/src/algo/core/impl/AbstractAlgorithm.hpp index e3a4597..3cf76aa 100755 --- a/src/algo/core/impl/AbstractAlgorithm.hpp +++ b/src/algo/core/impl/AbstractAlgorithm.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file AbstractAlgorithm.hpp diff --git a/src/algo/core/impl/AlgoIndexatorNucleotide.cpp b/src/algo/core/impl/AlgoIndexatorNucleotide.cpp index 29940fb..cbf4cdf 100755 --- a/src/algo/core/impl/AlgoIndexatorNucleotide.cpp +++ b/src/algo/core/impl/AlgoIndexatorNucleotide.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/algo/core/impl/AlgoIndexatorNucleotide.hpp b/src/algo/core/impl/AlgoIndexatorNucleotide.hpp index 2fe0d77..c1cc9f5 100755 --- a/src/algo/core/impl/AlgoIndexatorNucleotide.hpp +++ b/src/algo/core/impl/AlgoIndexatorNucleotide.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file AbstractAlgorithm.hpp diff --git a/src/algo/core/impl/AlgorithmPlastn.cpp b/src/algo/core/impl/AlgorithmPlastn.cpp index 71edcb2..b6a4e8d 100644 --- a/src/algo/core/impl/AlgorithmPlastn.cpp +++ b/src/algo/core/impl/AlgorithmPlastn.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/algo/core/impl/AlgorithmPlastn.hpp b/src/algo/core/impl/AlgorithmPlastn.hpp index b4402eb..7fa4343 100644 --- a/src/algo/core/impl/AlgorithmPlastn.hpp +++ b/src/algo/core/impl/AlgorithmPlastn.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file AlgorithmPlastn.hpp diff --git a/src/algo/core/impl/BasicAlgoIndexator.cpp b/src/algo/core/impl/BasicAlgoIndexator.cpp index bb0e8fe..2107b5f 100755 --- a/src/algo/core/impl/BasicAlgoIndexator.cpp +++ b/src/algo/core/impl/BasicAlgoIndexator.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/algo/core/impl/BasicAlgoIndexator.hpp b/src/algo/core/impl/BasicAlgoIndexator.hpp index 396f90a..27290f8 100755 --- a/src/algo/core/impl/BasicAlgoIndexator.hpp +++ b/src/algo/core/impl/BasicAlgoIndexator.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file AbstractAlgorithm.hpp diff --git a/src/algo/core/impl/DatabasesProvider.cpp b/src/algo/core/impl/DatabasesProvider.cpp index 434e74c..9d6af54 100755 --- a/src/algo/core/impl/DatabasesProvider.cpp +++ b/src/algo/core/impl/DatabasesProvider.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/algo/core/impl/DatabasesProvider.hpp b/src/algo/core/impl/DatabasesProvider.hpp index eb5f28d..b1d6c5a 100755 --- a/src/algo/core/impl/DatabasesProvider.hpp +++ b/src/algo/core/impl/DatabasesProvider.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file DatabasesProvider.hpp diff --git a/src/algo/core/impl/DefaultAlgoConfig.cpp b/src/algo/core/impl/DefaultAlgoConfig.cpp index 828b3d1..adb16e2 100755 --- a/src/algo/core/impl/DefaultAlgoConfig.cpp +++ b/src/algo/core/impl/DefaultAlgoConfig.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/algo/core/impl/DefaultAlgoConfig.hpp b/src/algo/core/impl/DefaultAlgoConfig.hpp index df61761..0c95151 100755 --- a/src/algo/core/impl/DefaultAlgoConfig.hpp +++ b/src/algo/core/impl/DefaultAlgoConfig.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file DefaultAlgoConfig.hpp diff --git a/src/algo/core/impl/DefaultAlgoEnvironment.cpp b/src/algo/core/impl/DefaultAlgoEnvironment.cpp index 2552973..f45caf8 100755 --- a/src/algo/core/impl/DefaultAlgoEnvironment.cpp +++ b/src/algo/core/impl/DefaultAlgoEnvironment.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/algo/core/impl/DefaultAlgoEnvironment.hpp b/src/algo/core/impl/DefaultAlgoEnvironment.hpp index 6d47cd1..e56f552 100755 --- a/src/algo/core/impl/DefaultAlgoEnvironment.hpp +++ b/src/algo/core/impl/DefaultAlgoEnvironment.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file DefaultAlgoEnvironment.hpp diff --git a/src/algo/core/impl/PlastnAlgoConfig.cpp b/src/algo/core/impl/PlastnAlgoConfig.cpp index 7a7b008..057e21b 100755 --- a/src/algo/core/impl/PlastnAlgoConfig.cpp +++ b/src/algo/core/impl/PlastnAlgoConfig.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/algo/core/impl/PlastnAlgoConfig.hpp b/src/algo/core/impl/PlastnAlgoConfig.hpp index 1fd5fcd..a84f6fd 100644 --- a/src/algo/core/impl/PlastnAlgoConfig.hpp +++ b/src/algo/core/impl/PlastnAlgoConfig.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file PlastnAlgoConfig.hpp diff --git a/src/algo/core/impl/ScoreMatrix.cpp b/src/algo/core/impl/ScoreMatrix.cpp index 2922d56..dcc321e 100755 --- a/src/algo/core/impl/ScoreMatrix.cpp +++ b/src/algo/core/impl/ScoreMatrix.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/algo/core/impl/ScoreMatrix.hpp b/src/algo/core/impl/ScoreMatrix.hpp index d71973f..e7e6585 100755 --- a/src/algo/core/impl/ScoreMatrix.hpp +++ b/src/algo/core/impl/ScoreMatrix.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file ScoreMatrix.hpp diff --git a/src/algo/hits/api/IHitIterator.hpp b/src/algo/hits/api/IHitIterator.hpp index 48877db..d2f1f9a 100755 --- a/src/algo/hits/api/IHitIterator.hpp +++ b/src/algo/hits/api/IHitIterator.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file IHitIterator.hpp diff --git a/src/algo/hits/common/AbstractHitIterator.cpp b/src/algo/hits/common/AbstractHitIterator.cpp index 657f6ac..82ce0b8 100755 --- a/src/algo/hits/common/AbstractHitIterator.cpp +++ b/src/algo/hits/common/AbstractHitIterator.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/algo/hits/common/AbstractHitIterator.hpp b/src/algo/hits/common/AbstractHitIterator.hpp index b27cd57..fd823ff 100755 --- a/src/algo/hits/common/AbstractHitIterator.hpp +++ b/src/algo/hits/common/AbstractHitIterator.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file AbstractHitIterator.hpp diff --git a/src/algo/hits/common/AbstractPipeHitIterator.cpp b/src/algo/hits/common/AbstractPipeHitIterator.cpp index 342734e..fa27885 100755 --- a/src/algo/hits/common/AbstractPipeHitIterator.cpp +++ b/src/algo/hits/common/AbstractPipeHitIterator.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/algo/hits/common/AbstractPipeHitIterator.hpp b/src/algo/hits/common/AbstractPipeHitIterator.hpp index 49c8229..dee4cb7 100755 --- a/src/algo/hits/common/AbstractPipeHitIterator.hpp +++ b/src/algo/hits/common/AbstractPipeHitIterator.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file AbstractPipeHitIterator.hpp diff --git a/src/algo/hits/gap/CompositionHitIterator.cpp b/src/algo/hits/gap/CompositionHitIterator.cpp index 6c01208..fd94a47 100755 --- a/src/algo/hits/gap/CompositionHitIterator.cpp +++ b/src/algo/hits/gap/CompositionHitIterator.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/algo/hits/gap/CompositionHitIterator.hpp b/src/algo/hits/gap/CompositionHitIterator.hpp index 9170d0b..4175227 100755 --- a/src/algo/hits/gap/CompositionHitIterator.hpp +++ b/src/algo/hits/gap/CompositionHitIterator.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file CompositionHitIterator.hpp diff --git a/src/algo/hits/gap/FullGapHitIterator.cpp b/src/algo/hits/gap/FullGapHitIterator.cpp index 82243d3..5dcba1d 100755 --- a/src/algo/hits/gap/FullGapHitIterator.cpp +++ b/src/algo/hits/gap/FullGapHitIterator.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/algo/hits/gap/FullGapHitIterator.hpp b/src/algo/hits/gap/FullGapHitIterator.hpp index 95c1e9a..3f20a17 100755 --- a/src/algo/hits/gap/FullGapHitIterator.hpp +++ b/src/algo/hits/gap/FullGapHitIterator.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file FullGapHitIterator.hpp diff --git a/src/algo/hits/gap/SmallGapHitIterator.cpp b/src/algo/hits/gap/SmallGapHitIterator.cpp index f581bf9..43c7401 100755 --- a/src/algo/hits/gap/SmallGapHitIterator.cpp +++ b/src/algo/hits/gap/SmallGapHitIterator.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/algo/hits/gap/SmallGapHitIterator.hpp b/src/algo/hits/gap/SmallGapHitIterator.hpp index de9f035..1111aab 100755 --- a/src/algo/hits/gap/SmallGapHitIterator.hpp +++ b/src/algo/hits/gap/SmallGapHitIterator.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file SmallGapHitIterator.hpp diff --git a/src/algo/hits/gap/SmallGapHitIteratorNull.cpp b/src/algo/hits/gap/SmallGapHitIteratorNull.cpp index 92c1d56..aa43675 100755 --- a/src/algo/hits/gap/SmallGapHitIteratorNull.cpp +++ b/src/algo/hits/gap/SmallGapHitIteratorNull.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/algo/hits/gap/SmallGapHitIteratorNull.hpp b/src/algo/hits/gap/SmallGapHitIteratorNull.hpp index 6bf8d51..43528cd 100755 --- a/src/algo/hits/gap/SmallGapHitIteratorNull.hpp +++ b/src/algo/hits/gap/SmallGapHitIteratorNull.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file SmallGapHitIteratorNull.hpp diff --git a/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp b/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp index cf3bcab..deb090f 100755 --- a/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp +++ b/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/algo/hits/gap/SmallGapHitIteratorSSE8.hpp b/src/algo/hits/gap/SmallGapHitIteratorSSE8.hpp index 9fcfc37..1b75f6d 100755 --- a/src/algo/hits/gap/SmallGapHitIteratorSSE8.hpp +++ b/src/algo/hits/gap/SmallGapHitIteratorSSE8.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file SmallGapHitIteratorSSE8.hpp diff --git a/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp b/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp index 055175e..4a27dcb 100644 --- a/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp +++ b/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/algo/hits/hsp/AlignmentGeneratorCmd.hpp b/src/algo/hits/hsp/AlignmentGeneratorCmd.hpp index 4066b83..c9bdae4 100644 --- a/src/algo/hits/hsp/AlignmentGeneratorCmd.hpp +++ b/src/algo/hits/hsp/AlignmentGeneratorCmd.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file AlignmentGeneratorCmd.hpp diff --git a/src/algo/hits/hsp/HspExtensionCmd.cpp b/src/algo/hits/hsp/HspExtensionCmd.cpp index 1f19bcf..9313858 100644 --- a/src/algo/hits/hsp/HspExtensionCmd.cpp +++ b/src/algo/hits/hsp/HspExtensionCmd.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/algo/hits/hsp/HspExtensionCmd.hpp b/src/algo/hits/hsp/HspExtensionCmd.hpp index 291aca5..1fb723a 100644 --- a/src/algo/hits/hsp/HspExtensionCmd.hpp +++ b/src/algo/hits/hsp/HspExtensionCmd.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file HspExtensionCmd.hpp diff --git a/src/algo/hits/hsp/HspGeneratorCmd.cpp b/src/algo/hits/hsp/HspGeneratorCmd.cpp index e76a0e2..b91a32c 100755 --- a/src/algo/hits/hsp/HspGeneratorCmd.cpp +++ b/src/algo/hits/hsp/HspGeneratorCmd.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/algo/hits/hsp/HspGeneratorCmd.hpp b/src/algo/hits/hsp/HspGeneratorCmd.hpp index 5af508e..e136099 100755 --- a/src/algo/hits/hsp/HspGeneratorCmd.hpp +++ b/src/algo/hits/hsp/HspGeneratorCmd.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file HspGeneratorCmd.hpp diff --git a/src/algo/hits/seed/SeedHitIterator.cpp b/src/algo/hits/seed/SeedHitIterator.cpp index 0211c74..a4be2c5 100755 --- a/src/algo/hits/seed/SeedHitIterator.cpp +++ b/src/algo/hits/seed/SeedHitIterator.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/algo/hits/seed/SeedHitIterator.hpp b/src/algo/hits/seed/SeedHitIterator.hpp index ca85457..a12b226 100755 --- a/src/algo/hits/seed/SeedHitIterator.hpp +++ b/src/algo/hits/seed/SeedHitIterator.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file SeedHitIterator.hpp diff --git a/src/algo/hits/seed/SeedHitIteratorCached.cpp b/src/algo/hits/seed/SeedHitIteratorCached.cpp index e94485f..d04f44b 100755 --- a/src/algo/hits/seed/SeedHitIteratorCached.cpp +++ b/src/algo/hits/seed/SeedHitIteratorCached.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/algo/hits/seed/SeedHitIteratorCached.hpp b/src/algo/hits/seed/SeedHitIteratorCached.hpp index d547f8a..3fd33ce 100755 --- a/src/algo/hits/seed/SeedHitIteratorCached.hpp +++ b/src/algo/hits/seed/SeedHitIteratorCached.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file SeedHitIteratorCached.hpp diff --git a/src/algo/hits/ungap/UngapExtendHitIterator.cpp b/src/algo/hits/ungap/UngapExtendHitIterator.cpp index 106df1a..2661bd3 100755 --- a/src/algo/hits/ungap/UngapExtendHitIterator.cpp +++ b/src/algo/hits/ungap/UngapExtendHitIterator.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/algo/hits/ungap/UngapExtendHitIterator.hpp b/src/algo/hits/ungap/UngapExtendHitIterator.hpp index 00ccf11..e0d0e7d 100755 --- a/src/algo/hits/ungap/UngapExtendHitIterator.hpp +++ b/src/algo/hits/ungap/UngapExtendHitIterator.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file UngapExtendHitIterator.hpp diff --git a/src/algo/hits/ungap/UngapHitIterator.cpp b/src/algo/hits/ungap/UngapHitIterator.cpp index c550681..5ff4af3 100755 --- a/src/algo/hits/ungap/UngapHitIterator.cpp +++ b/src/algo/hits/ungap/UngapHitIterator.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/algo/hits/ungap/UngapHitIterator.hpp b/src/algo/hits/ungap/UngapHitIterator.hpp index 59371b9..568a10c 100755 --- a/src/algo/hits/ungap/UngapHitIterator.hpp +++ b/src/algo/hits/ungap/UngapHitIterator.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file UngapHitIterator.hpp diff --git a/src/algo/hits/ungap/UngapHitIteratorNull.cpp b/src/algo/hits/ungap/UngapHitIteratorNull.cpp index 3dc8c44..60df975 100755 --- a/src/algo/hits/ungap/UngapHitIteratorNull.cpp +++ b/src/algo/hits/ungap/UngapHitIteratorNull.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/algo/hits/ungap/UngapHitIteratorNull.hpp b/src/algo/hits/ungap/UngapHitIteratorNull.hpp index 920f824..ce2ddb6 100755 --- a/src/algo/hits/ungap/UngapHitIteratorNull.hpp +++ b/src/algo/hits/ungap/UngapHitIteratorNull.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file UngapHitIteratorNull.hpp diff --git a/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp b/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp index 7a08d1c..af1ec1c 100755 --- a/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp +++ b/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/algo/hits/ungap/UngapHitIteratorSSE16.hpp b/src/algo/hits/ungap/UngapHitIteratorSSE16.hpp index 479ec2a..4109544 100755 --- a/src/algo/hits/ungap/UngapHitIteratorSSE16.hpp +++ b/src/algo/hits/ungap/UngapHitIteratorSSE16.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file UngapHitIteratorSSE16.hpp diff --git a/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp b/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp index e2f6e52..dac0c44 100755 --- a/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp +++ b/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/algo/hits/ungap/UngapHitIteratorSSE8.hpp b/src/algo/hits/ungap/UngapHitIteratorSSE8.hpp index d244cac..1975a29 100755 --- a/src/algo/hits/ungap/UngapHitIteratorSSE8.hpp +++ b/src/algo/hits/ungap/UngapHitIteratorSSE8.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file UngapHitIteratorSSE8.hpp diff --git a/src/algo/stats/api/IStatistics.hpp b/src/algo/stats/api/IStatistics.hpp index c9679e1..d497894 100755 --- a/src/algo/stats/api/IStatistics.hpp +++ b/src/algo/stats/api/IStatistics.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file IStatistics.hpp diff --git a/src/algo/stats/impl/Statistics.cpp b/src/algo/stats/impl/Statistics.cpp index 28e097a..dfc8d13 100755 --- a/src/algo/stats/impl/Statistics.cpp +++ b/src/algo/stats/impl/Statistics.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/algo/stats/impl/Statistics.hpp b/src/algo/stats/impl/Statistics.hpp index 931c524..d01a36c 100755 --- a/src/algo/stats/impl/Statistics.hpp +++ b/src/algo/stats/impl/Statistics.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file Statistics.hpp diff --git a/src/algo/stats/impl/StatisticsPlastn.cpp b/src/algo/stats/impl/StatisticsPlastn.cpp index 060ca4a..c3416b8 100644 --- a/src/algo/stats/impl/StatisticsPlastn.cpp +++ b/src/algo/stats/impl/StatisticsPlastn.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/algo/stats/impl/StatisticsPlastn.hpp b/src/algo/stats/impl/StatisticsPlastn.hpp index ae324e7..61ad23b 100644 --- a/src/algo/stats/impl/StatisticsPlastn.hpp +++ b/src/algo/stats/impl/StatisticsPlastn.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file StatisticsPlastn.hpp diff --git a/src/algo/stats/impl/StatisticsSpouge.cpp b/src/algo/stats/impl/StatisticsSpouge.cpp index dceab5c..ab181a0 100755 --- a/src/algo/stats/impl/StatisticsSpouge.cpp +++ b/src/algo/stats/impl/StatisticsSpouge.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/algo/stats/impl/StatisticsSpouge.hpp b/src/algo/stats/impl/StatisticsSpouge.hpp index 936ac98..b888f0d 100755 --- a/src/algo/stats/impl/StatisticsSpouge.hpp +++ b/src/algo/stats/impl/StatisticsSpouge.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file StatisticsSpouge.hpp diff --git a/src/alignment/core/api/Alignment.hpp b/src/alignment/core/api/Alignment.hpp index 4bd4272..3188cb5 100755 --- a/src/alignment/core/api/Alignment.hpp +++ b/src/alignment/core/api/Alignment.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file Alignment.hpp diff --git a/src/alignment/core/api/IAlignmentContainer.hpp b/src/alignment/core/api/IAlignmentContainer.hpp index 4bbe314..324c223 100755 --- a/src/alignment/core/api/IAlignmentContainer.hpp +++ b/src/alignment/core/api/IAlignmentContainer.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file IAlignmentContainer.hpp diff --git a/src/alignment/core/api/IAlignmentContainerFactory.hpp b/src/alignment/core/api/IAlignmentContainerFactory.hpp index 1286410..90166ff 100755 --- a/src/alignment/core/api/IAlignmentContainerFactory.hpp +++ b/src/alignment/core/api/IAlignmentContainerFactory.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file IAlignmentContainerFactory.hpp diff --git a/src/alignment/core/api/IAlignmentContainerModel.hpp b/src/alignment/core/api/IAlignmentContainerModel.hpp index bf66fb3..04b2b94 100755 --- a/src/alignment/core/api/IAlignmentContainerModel.hpp +++ b/src/alignment/core/api/IAlignmentContainerModel.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file IAlignmentContainerModel.hpp diff --git a/src/alignment/core/api/IAlignmentContainerVisitor.hpp b/src/alignment/core/api/IAlignmentContainerVisitor.hpp index f380a3e..7b60d8d 100755 --- a/src/alignment/core/api/IAlignmentContainerVisitor.hpp +++ b/src/alignment/core/api/IAlignmentContainerVisitor.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file IAlignmentContainerVisitor.hpp diff --git a/src/alignment/core/api/IHspContainer.hpp b/src/alignment/core/api/IHspContainer.hpp index a8aaf93..c0eee02 100644 --- a/src/alignment/core/api/IHspContainer.hpp +++ b/src/alignment/core/api/IHspContainer.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file IHspContainer.hpp diff --git a/src/alignment/core/impl/AbstractAlignmentContainer.cpp b/src/alignment/core/impl/AbstractAlignmentContainer.cpp index fb1dab1..699c124 100755 --- a/src/alignment/core/impl/AbstractAlignmentContainer.cpp +++ b/src/alignment/core/impl/AbstractAlignmentContainer.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/alignment/core/impl/AbstractAlignmentContainer.hpp b/src/alignment/core/impl/AbstractAlignmentContainer.hpp index 79c1def..5f5ab87 100755 --- a/src/alignment/core/impl/AbstractAlignmentContainer.hpp +++ b/src/alignment/core/impl/AbstractAlignmentContainer.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file AbstractAlignmentContainer.hpp diff --git a/src/alignment/core/impl/Alignment.cpp b/src/alignment/core/impl/Alignment.cpp index 2fc33a2..4fb11f6 100755 --- a/src/alignment/core/impl/Alignment.cpp +++ b/src/alignment/core/impl/Alignment.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/alignment/core/impl/AlignmentContainerFactory.cpp b/src/alignment/core/impl/AlignmentContainerFactory.cpp index 8a9554c..4728cf1 100755 --- a/src/alignment/core/impl/AlignmentContainerFactory.cpp +++ b/src/alignment/core/impl/AlignmentContainerFactory.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/alignment/core/impl/AlignmentContainerFactory.hpp b/src/alignment/core/impl/AlignmentContainerFactory.hpp index 204dc32..7899b67 100755 --- a/src/alignment/core/impl/AlignmentContainerFactory.hpp +++ b/src/alignment/core/impl/AlignmentContainerFactory.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file AlignmentContainerFactory.hpp diff --git a/src/alignment/core/impl/BasicAlignmentContainer.cpp b/src/alignment/core/impl/BasicAlignmentContainer.cpp index 75c2d0b..eb3f480 100755 --- a/src/alignment/core/impl/BasicAlignmentContainer.cpp +++ b/src/alignment/core/impl/BasicAlignmentContainer.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/alignment/core/impl/BasicAlignmentContainer.hpp b/src/alignment/core/impl/BasicAlignmentContainer.hpp index 52a5512..5850ed7 100755 --- a/src/alignment/core/impl/BasicAlignmentContainer.hpp +++ b/src/alignment/core/impl/BasicAlignmentContainer.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file BasicAlignmentContainer.hpp diff --git a/src/alignment/core/impl/HspContainer.cpp b/src/alignment/core/impl/HspContainer.cpp index ab7f492..e4f422c 100644 --- a/src/alignment/core/impl/HspContainer.cpp +++ b/src/alignment/core/impl/HspContainer.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/alignment/core/impl/HspContainer.hpp b/src/alignment/core/impl/HspContainer.hpp index 8565391..ebd39f5 100644 --- a/src/alignment/core/impl/HspContainer.hpp +++ b/src/alignment/core/impl/HspContainer.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file HspContainer.hpp diff --git a/src/alignment/core/impl/NullAlignmentContainer.hpp b/src/alignment/core/impl/NullAlignmentContainer.hpp index 62a4ebb..9ec1ef7 100755 --- a/src/alignment/core/impl/NullAlignmentContainer.hpp +++ b/src/alignment/core/impl/NullAlignmentContainer.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file NullAlignmentContainer.hpp diff --git a/src/alignment/core/impl/ReaderAlignmentContainer.cpp b/src/alignment/core/impl/ReaderAlignmentContainer.cpp index 2a9658c..2607c8f 100755 --- a/src/alignment/core/impl/ReaderAlignmentContainer.cpp +++ b/src/alignment/core/impl/ReaderAlignmentContainer.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/alignment/core/impl/ReaderAlignmentContainer.hpp b/src/alignment/core/impl/ReaderAlignmentContainer.hpp index aef83cb..13ceae0 100755 --- a/src/alignment/core/impl/ReaderAlignmentContainer.hpp +++ b/src/alignment/core/impl/ReaderAlignmentContainer.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file ReaderAlignmentContainer.hpp diff --git a/src/alignment/core/impl/UngapAlignmentContainer.cpp b/src/alignment/core/impl/UngapAlignmentContainer.cpp index e244573..b561ee5 100755 --- a/src/alignment/core/impl/UngapAlignmentContainer.cpp +++ b/src/alignment/core/impl/UngapAlignmentContainer.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ diff --git a/src/alignment/core/impl/UngapAlignmentContainer.hpp b/src/alignment/core/impl/UngapAlignmentContainer.hpp index f7d78e9..3d4bd03 100755 --- a/src/alignment/core/impl/UngapAlignmentContainer.hpp +++ b/src/alignment/core/impl/UngapAlignmentContainer.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file UngapAlignmentResult.hpp diff --git a/src/alignment/filter/api/IAlignmentFilter.hpp b/src/alignment/filter/api/IAlignmentFilter.hpp index 1450bb6..85a722b 100755 --- a/src/alignment/filter/api/IAlignmentFilter.hpp +++ b/src/alignment/filter/api/IAlignmentFilter.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file IAlignmentFilter.hpp diff --git a/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp b/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp index dff8544..1a61315 100755 --- a/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp +++ b/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/alignment/filter/impl/AbstractAlignmentFilterFactory.hpp b/src/alignment/filter/impl/AbstractAlignmentFilterFactory.hpp index 31788b5..2c4a555 100755 --- a/src/alignment/filter/impl/AbstractAlignmentFilterFactory.hpp +++ b/src/alignment/filter/impl/AbstractAlignmentFilterFactory.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file AbstractAlignmentFilterFactory.hpp diff --git a/src/alignment/filter/impl/AlignmentFilterFactory.cpp b/src/alignment/filter/impl/AlignmentFilterFactory.cpp index 26c2e91..8afc937 100755 --- a/src/alignment/filter/impl/AlignmentFilterFactory.cpp +++ b/src/alignment/filter/impl/AlignmentFilterFactory.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/alignment/filter/impl/AlignmentFilterFactory.hpp b/src/alignment/filter/impl/AlignmentFilterFactory.hpp index 02dc430..67418aa 100755 --- a/src/alignment/filter/impl/AlignmentFilterFactory.hpp +++ b/src/alignment/filter/impl/AlignmentFilterFactory.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file AlignmentFilterXML.hpp diff --git a/src/alignment/filter/impl/AlignmentFilterOperator.cpp b/src/alignment/filter/impl/AlignmentFilterOperator.cpp index 6e6a759..d6a5656 100755 --- a/src/alignment/filter/impl/AlignmentFilterOperator.cpp +++ b/src/alignment/filter/impl/AlignmentFilterOperator.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/alignment/filter/impl/AlignmentFilterOperator.hpp b/src/alignment/filter/impl/AlignmentFilterOperator.hpp index abaed1f..efb58fb 100755 --- a/src/alignment/filter/impl/AlignmentFilterOperator.hpp +++ b/src/alignment/filter/impl/AlignmentFilterOperator.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file OperatorAlignmentFilter.hpp diff --git a/src/alignment/filter/impl/AlignmentFilterXML.cpp b/src/alignment/filter/impl/AlignmentFilterXML.cpp index 9e1dc2f..8b8d639 100755 --- a/src/alignment/filter/impl/AlignmentFilterXML.cpp +++ b/src/alignment/filter/impl/AlignmentFilterXML.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/alignment/filter/impl/AlignmentFilterXML.hpp b/src/alignment/filter/impl/AlignmentFilterXML.hpp index 23109b6..8487a3e 100755 --- a/src/alignment/filter/impl/AlignmentFilterXML.hpp +++ b/src/alignment/filter/impl/AlignmentFilterXML.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file AlignmentFilterXML.hpp diff --git a/src/alignment/tools/api/IAlignmentSplitter.hpp b/src/alignment/tools/api/IAlignmentSplitter.hpp index 539819a..665915d 100755 --- a/src/alignment/tools/api/IAlignmentSplitter.hpp +++ b/src/alignment/tools/api/IAlignmentSplitter.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file IAlignmentSplitter.hpp diff --git a/src/alignment/tools/api/ISemiGappedAlign.hpp b/src/alignment/tools/api/ISemiGappedAlign.hpp index 11c8bb1..f43121d 100755 --- a/src/alignment/tools/api/ISemiGappedAlign.hpp +++ b/src/alignment/tools/api/ISemiGappedAlign.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file ISemiGapAlign.hpp diff --git a/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp b/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp index c929c74..9c2b92b 100755 --- a/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp +++ b/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/alignment/tools/impl/AlignmentContainerShrinkCmd.hpp b/src/alignment/tools/impl/AlignmentContainerShrinkCmd.hpp index c18da69..f2921f9 100755 --- a/src/alignment/tools/impl/AlignmentContainerShrinkCmd.hpp +++ b/src/alignment/tools/impl/AlignmentContainerShrinkCmd.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file AlignmentContainerShrinkCmd.hpp diff --git a/src/alignment/tools/impl/AlignmentOverlapCmd.cpp b/src/alignment/tools/impl/AlignmentOverlapCmd.cpp index 03cec39..6febaf5 100755 --- a/src/alignment/tools/impl/AlignmentOverlapCmd.cpp +++ b/src/alignment/tools/impl/AlignmentOverlapCmd.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/alignment/tools/impl/AlignmentOverlapCmd.hpp b/src/alignment/tools/impl/AlignmentOverlapCmd.hpp index f29015b..e61f238 100755 --- a/src/alignment/tools/impl/AlignmentOverlapCmd.hpp +++ b/src/alignment/tools/impl/AlignmentOverlapCmd.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file AlignmentOverlap.hpp diff --git a/src/alignment/tools/impl/AlignmentSplitter.cpp b/src/alignment/tools/impl/AlignmentSplitter.cpp index fbfcbca..7113f01 100755 --- a/src/alignment/tools/impl/AlignmentSplitter.cpp +++ b/src/alignment/tools/impl/AlignmentSplitter.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/alignment/tools/impl/AlignmentSplitter.hpp b/src/alignment/tools/impl/AlignmentSplitter.hpp index 36b6b9f..5a5e197 100755 --- a/src/alignment/tools/impl/AlignmentSplitter.hpp +++ b/src/alignment/tools/impl/AlignmentSplitter.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file AlignmentSplitter.hpp diff --git a/src/alignment/tools/impl/AlignmentSplitterBanded.cpp b/src/alignment/tools/impl/AlignmentSplitterBanded.cpp index 8f07a76..f179888 100755 --- a/src/alignment/tools/impl/AlignmentSplitterBanded.cpp +++ b/src/alignment/tools/impl/AlignmentSplitterBanded.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/alignment/tools/impl/AlignmentSplitterBanded.hpp b/src/alignment/tools/impl/AlignmentSplitterBanded.hpp index 33a3de0..76c0530 100755 --- a/src/alignment/tools/impl/AlignmentSplitterBanded.hpp +++ b/src/alignment/tools/impl/AlignmentSplitterBanded.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file AlignmentSplitter.hpp diff --git a/src/alignment/tools/impl/SemiGappedAlign.cpp b/src/alignment/tools/impl/SemiGappedAlign.cpp index 445c420..8d34e4e 100755 --- a/src/alignment/tools/impl/SemiGappedAlign.cpp +++ b/src/alignment/tools/impl/SemiGappedAlign.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/alignment/tools/impl/SemiGappedAlign.hpp b/src/alignment/tools/impl/SemiGappedAlign.hpp index d19d8a0..6746c86 100755 --- a/src/alignment/tools/impl/SemiGappedAlign.hpp +++ b/src/alignment/tools/impl/SemiGappedAlign.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file SemiGapAlign.hpp diff --git a/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp b/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp index 4060a2f..05d995d 100755 --- a/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp +++ b/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/alignment/tools/impl/SemiGappedAlignTraceback.hpp b/src/alignment/tools/impl/SemiGappedAlignTraceback.hpp index f40249d..baaf67b 100755 --- a/src/alignment/tools/impl/SemiGappedAlignTraceback.hpp +++ b/src/alignment/tools/impl/SemiGappedAlignTraceback.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file SemiGapAlign.hpp diff --git a/src/alignment/visitors/impl/AdapterAlignmentVisitor.hpp b/src/alignment/visitors/impl/AdapterAlignmentVisitor.hpp index ea352c4..8e737a7 100755 --- a/src/alignment/visitors/impl/AdapterAlignmentVisitor.hpp +++ b/src/alignment/visitors/impl/AdapterAlignmentVisitor.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file AdapterAlignmentContainerVisitor.hpp diff --git a/src/alignment/visitors/impl/CompareContainerVisitor.cpp b/src/alignment/visitors/impl/CompareContainerVisitor.cpp index 304244c..c6b8759 100755 --- a/src/alignment/visitors/impl/CompareContainerVisitor.cpp +++ b/src/alignment/visitors/impl/CompareContainerVisitor.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/alignment/visitors/impl/CompareContainerVisitor.hpp b/src/alignment/visitors/impl/CompareContainerVisitor.hpp index 4100ada..d3c8cde 100755 --- a/src/alignment/visitors/impl/CompareContainerVisitor.hpp +++ b/src/alignment/visitors/impl/CompareContainerVisitor.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file CompareContainerVisitor.hpp diff --git a/src/alignment/visitors/impl/CompareResultQryVisitor.hpp b/src/alignment/visitors/impl/CompareResultQryVisitor.hpp index 4324ab2..bfddacb 100644 --- a/src/alignment/visitors/impl/CompareResultQryVisitor.hpp +++ b/src/alignment/visitors/impl/CompareResultQryVisitor.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file CompareResultQryVisitor.hpp diff --git a/src/alignment/visitors/impl/CompareResultVisitor.cpp b/src/alignment/visitors/impl/CompareResultVisitor.cpp index 0ec79a0..b86a7ae 100755 --- a/src/alignment/visitors/impl/CompareResultVisitor.cpp +++ b/src/alignment/visitors/impl/CompareResultVisitor.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/alignment/visitors/impl/CompareResultVisitor.hpp b/src/alignment/visitors/impl/CompareResultVisitor.hpp index 73d7f65..22eadc0 100755 --- a/src/alignment/visitors/impl/CompareResultVisitor.hpp +++ b/src/alignment/visitors/impl/CompareResultVisitor.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file CompareResultVisitor.hpp diff --git a/src/alignment/visitors/impl/FilterContainerVisitor.cpp b/src/alignment/visitors/impl/FilterContainerVisitor.cpp index d2a3967..a798978 100755 --- a/src/alignment/visitors/impl/FilterContainerVisitor.cpp +++ b/src/alignment/visitors/impl/FilterContainerVisitor.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/alignment/visitors/impl/FilterContainerVisitor.hpp b/src/alignment/visitors/impl/FilterContainerVisitor.hpp index 9a95134..31e4a76 100755 --- a/src/alignment/visitors/impl/FilterContainerVisitor.hpp +++ b/src/alignment/visitors/impl/FilterContainerVisitor.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file FilterContainerVisitor.hpp diff --git a/src/alignment/visitors/impl/HierarchyAlignmentVisitor.hpp b/src/alignment/visitors/impl/HierarchyAlignmentVisitor.hpp index bf1abbc..fef9abc 100755 --- a/src/alignment/visitors/impl/HierarchyAlignmentVisitor.hpp +++ b/src/alignment/visitors/impl/HierarchyAlignmentVisitor.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file HierarchyAlignmentContainerVisitor.hpp diff --git a/src/alignment/visitors/impl/MaxHitsPerQueryVisitor.cpp b/src/alignment/visitors/impl/MaxHitsPerQueryVisitor.cpp index b1fc333..a6031a8 100755 --- a/src/alignment/visitors/impl/MaxHitsPerQueryVisitor.cpp +++ b/src/alignment/visitors/impl/MaxHitsPerQueryVisitor.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/alignment/visitors/impl/MaxHitsPerQueryVisitor.hpp b/src/alignment/visitors/impl/MaxHitsPerQueryVisitor.hpp index 34b5cc9..22c1703 100755 --- a/src/alignment/visitors/impl/MaxHitsPerQueryVisitor.hpp +++ b/src/alignment/visitors/impl/MaxHitsPerQueryVisitor.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file MaxHitsPerQueryVisitor.hpp diff --git a/src/alignment/visitors/impl/ModelBuilderVisitor.cpp b/src/alignment/visitors/impl/ModelBuilderVisitor.cpp index ff6d007..7a504c1 100755 --- a/src/alignment/visitors/impl/ModelBuilderVisitor.cpp +++ b/src/alignment/visitors/impl/ModelBuilderVisitor.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/alignment/visitors/impl/ModelBuilderVisitor.hpp b/src/alignment/visitors/impl/ModelBuilderVisitor.hpp index 0aea2d2..d42ae56 100755 --- a/src/alignment/visitors/impl/ModelBuilderVisitor.hpp +++ b/src/alignment/visitors/impl/ModelBuilderVisitor.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file ModelFactoryVisitors.hpp diff --git a/src/alignment/visitors/impl/ModifierContainerVisitor.hpp b/src/alignment/visitors/impl/ModifierContainerVisitor.hpp index a2913ac..184464c 100755 --- a/src/alignment/visitors/impl/ModifierContainerVisitor.hpp +++ b/src/alignment/visitors/impl/ModifierContainerVisitor.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file ModifierContainerVisitor.hpp diff --git a/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp b/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp index 5c4265b..3f3aa2a 100755 --- a/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp +++ b/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/alignment/visitors/impl/NucleotidConversionVisitor.hpp b/src/alignment/visitors/impl/NucleotidConversionVisitor.hpp index 5c37628..c78d2f5 100755 --- a/src/alignment/visitors/impl/NucleotidConversionVisitor.hpp +++ b/src/alignment/visitors/impl/NucleotidConversionVisitor.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file NucleotidConversionVisitor.hpp diff --git a/src/alignment/visitors/impl/OstreamVisitor.hpp b/src/alignment/visitors/impl/OstreamVisitor.hpp index ca4ea60..6b6f035 100755 --- a/src/alignment/visitors/impl/OstreamVisitor.hpp +++ b/src/alignment/visitors/impl/OstreamVisitor.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file AlignmentResultVisitors.hpp diff --git a/src/alignment/visitors/impl/ProxyVisitor.hpp b/src/alignment/visitors/impl/ProxyVisitor.hpp index a98b771..31d3143 100755 --- a/src/alignment/visitors/impl/ProxyVisitor.hpp +++ b/src/alignment/visitors/impl/ProxyVisitor.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file ProxyVisitor.hpp diff --git a/src/alignment/visitors/impl/QueryReorderVisitor.cpp b/src/alignment/visitors/impl/QueryReorderVisitor.cpp index 5092d69..73bd4cc 100755 --- a/src/alignment/visitors/impl/QueryReorderVisitor.cpp +++ b/src/alignment/visitors/impl/QueryReorderVisitor.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/alignment/visitors/impl/QueryReorderVisitor.hpp b/src/alignment/visitors/impl/QueryReorderVisitor.hpp index 239caef..97ccac7 100755 --- a/src/alignment/visitors/impl/QueryReorderVisitor.hpp +++ b/src/alignment/visitors/impl/QueryReorderVisitor.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file QueryReorderVisitor.hpp diff --git a/src/alignment/visitors/impl/RawOutputVisitor.hpp b/src/alignment/visitors/impl/RawOutputVisitor.hpp index 58c2374..b2b6f69 100755 --- a/src/alignment/visitors/impl/RawOutputVisitor.hpp +++ b/src/alignment/visitors/impl/RawOutputVisitor.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file RawOutputVisitor.hpp diff --git a/src/alignment/visitors/impl/ReverseStrandVisitor.cpp b/src/alignment/visitors/impl/ReverseStrandVisitor.cpp index 4496a2e..c4776a5 100755 --- a/src/alignment/visitors/impl/ReverseStrandVisitor.cpp +++ b/src/alignment/visitors/impl/ReverseStrandVisitor.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/alignment/visitors/impl/ReverseStrandVisitor.hpp b/src/alignment/visitors/impl/ReverseStrandVisitor.hpp index 22b8b36..df199d6 100755 --- a/src/alignment/visitors/impl/ReverseStrandVisitor.hpp +++ b/src/alignment/visitors/impl/ReverseStrandVisitor.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file ReverseStrandVisitor.hpp diff --git a/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp b/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp index 187f995..28c4339 100755 --- a/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp +++ b/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/alignment/visitors/impl/ShrinkContainerVisitor.hpp b/src/alignment/visitors/impl/ShrinkContainerVisitor.hpp index a250c85..42df383 100755 --- a/src/alignment/visitors/impl/ShrinkContainerVisitor.hpp +++ b/src/alignment/visitors/impl/ShrinkContainerVisitor.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file ShrinkContainerVisitor.hpp diff --git a/src/alignment/visitors/impl/SortContainerVisitor.cpp b/src/alignment/visitors/impl/SortContainerVisitor.cpp index 1b2446b..111bcbf 100755 --- a/src/alignment/visitors/impl/SortContainerVisitor.cpp +++ b/src/alignment/visitors/impl/SortContainerVisitor.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/alignment/visitors/impl/SortContainerVisitor.hpp b/src/alignment/visitors/impl/SortContainerVisitor.hpp index 2e939e5..e32472c 100755 --- a/src/alignment/visitors/impl/SortContainerVisitor.hpp +++ b/src/alignment/visitors/impl/SortContainerVisitor.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file SortContainerVisitor.hpp diff --git a/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp b/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp index c192bce..95ca186 100755 --- a/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp +++ b/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/alignment/visitors/impl/TabulatedOutputVisitor.hpp b/src/alignment/visitors/impl/TabulatedOutputVisitor.hpp index 87a5e2b..bc296dd 100755 --- a/src/alignment/visitors/impl/TabulatedOutputVisitor.hpp +++ b/src/alignment/visitors/impl/TabulatedOutputVisitor.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file AlignmentResultVisitors.hpp diff --git a/src/alignment/visitors/impl/XmlOutputVisitor.cpp b/src/alignment/visitors/impl/XmlOutputVisitor.cpp index bd3a697..e717cd5 100755 --- a/src/alignment/visitors/impl/XmlOutputVisitor.cpp +++ b/src/alignment/visitors/impl/XmlOutputVisitor.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/alignment/visitors/impl/XmlOutputVisitor.hpp b/src/alignment/visitors/impl/XmlOutputVisitor.hpp index aa088a2..7c8de00 100755 --- a/src/alignment/visitors/impl/XmlOutputVisitor.hpp +++ b/src/alignment/visitors/impl/XmlOutputVisitor.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file XmlOutputVisitor.hpp diff --git a/src/database/api/IAlphabet.hpp b/src/database/api/IAlphabet.hpp index b05f344..2ea67b2 100755 --- a/src/database/api/IAlphabet.hpp +++ b/src/database/api/IAlphabet.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file IAlphabet.hpp diff --git a/src/database/api/IDatabaseQuickReader.hpp b/src/database/api/IDatabaseQuickReader.hpp index 0a9ce19..24f6904 100755 --- a/src/database/api/IDatabaseQuickReader.hpp +++ b/src/database/api/IDatabaseQuickReader.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file IDatabaseQuickReader.hpp diff --git a/src/database/api/ISequence.hpp b/src/database/api/ISequence.hpp index db680c2..1823172 100755 --- a/src/database/api/ISequence.hpp +++ b/src/database/api/ISequence.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file ISequence.hpp diff --git a/src/database/api/ISequenceBuilder.hpp b/src/database/api/ISequenceBuilder.hpp index 0a2bdb5..88215ec 100755 --- a/src/database/api/ISequenceBuilder.hpp +++ b/src/database/api/ISequenceBuilder.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file ISequenceBuilder.hpp diff --git a/src/database/api/ISequenceCache.hpp b/src/database/api/ISequenceCache.hpp index 6025b21..be22561 100755 --- a/src/database/api/ISequenceCache.hpp +++ b/src/database/api/ISequenceCache.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file ISequenceCache.hpp diff --git a/src/database/api/ISequenceDatabase.hpp b/src/database/api/ISequenceDatabase.hpp index daaf572..85542a0 100755 --- a/src/database/api/ISequenceDatabase.hpp +++ b/src/database/api/ISequenceDatabase.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file ISequenceDatabase.hpp diff --git a/src/database/api/ISequenceIterator.hpp b/src/database/api/ISequenceIterator.hpp index e633154..9da4103 100755 --- a/src/database/api/ISequenceIterator.hpp +++ b/src/database/api/ISequenceIterator.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file ISequenceIterator.hpp diff --git a/src/database/api/IWord.hpp b/src/database/api/IWord.hpp index eda2306..39fd635 100755 --- a/src/database/api/IWord.hpp +++ b/src/database/api/IWord.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file IWord.hpp diff --git a/src/database/impl/AbstractSequenceIterator.cpp b/src/database/impl/AbstractSequenceIterator.cpp index e48e5ed..bccfb96 100755 --- a/src/database/impl/AbstractSequenceIterator.cpp +++ b/src/database/impl/AbstractSequenceIterator.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/database/impl/AbstractSequenceIterator.hpp b/src/database/impl/AbstractSequenceIterator.hpp index 456422c..36b29ac 100755 --- a/src/database/impl/AbstractSequenceIterator.hpp +++ b/src/database/impl/AbstractSequenceIterator.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file AbstractSequenceIterator.hpp diff --git a/src/database/impl/AminoAcidDatabaseQuickReader.hpp b/src/database/impl/AminoAcidDatabaseQuickReader.hpp index ac87c44..ded1c16 100755 --- a/src/database/impl/AminoAcidDatabaseQuickReader.hpp +++ b/src/database/impl/AminoAcidDatabaseQuickReader.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file AminoAcidDatabaseQuickReader.hpp diff --git a/src/database/impl/BasicSequenceBuilder.cpp b/src/database/impl/BasicSequenceBuilder.cpp index 03fbc4b..80b7d25 100755 --- a/src/database/impl/BasicSequenceBuilder.cpp +++ b/src/database/impl/BasicSequenceBuilder.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/database/impl/BasicSequenceBuilder.hpp b/src/database/impl/BasicSequenceBuilder.hpp index bea1b10..72d98e3 100755 --- a/src/database/impl/BasicSequenceBuilder.hpp +++ b/src/database/impl/BasicSequenceBuilder.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file BasicSequenceBuilder.hpp diff --git a/src/database/impl/BlastdbAsn1HeaderDecoder.cpp b/src/database/impl/BlastdbAsn1HeaderDecoder.cpp index b7e6360..80e3d0c 100755 --- a/src/database/impl/BlastdbAsn1HeaderDecoder.cpp +++ b/src/database/impl/BlastdbAsn1HeaderDecoder.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/database/impl/BlastdbAsn1HeaderDecoder.hpp b/src/database/impl/BlastdbAsn1HeaderDecoder.hpp index 80c2410..016a7cb 100755 --- a/src/database/impl/BlastdbAsn1HeaderDecoder.hpp +++ b/src/database/impl/BlastdbAsn1HeaderDecoder.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file BlastdbAsn1HeaderDecoder.hpp diff --git a/src/database/impl/BlastdbDatabaseQuickReader.cpp b/src/database/impl/BlastdbDatabaseQuickReader.cpp index 6a730e1..f2946b9 100755 --- a/src/database/impl/BlastdbDatabaseQuickReader.cpp +++ b/src/database/impl/BlastdbDatabaseQuickReader.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/database/impl/BlastdbDatabaseQuickReader.hpp b/src/database/impl/BlastdbDatabaseQuickReader.hpp index 977a9db..51203f3 100755 --- a/src/database/impl/BlastdbDatabaseQuickReader.hpp +++ b/src/database/impl/BlastdbDatabaseQuickReader.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file BlastdbDatabaseQuickReader.hpp diff --git a/src/database/impl/BlastdbFileIndexReader.cpp b/src/database/impl/BlastdbFileIndexReader.cpp index 6e10dbb..1d9c2b9 100755 --- a/src/database/impl/BlastdbFileIndexReader.cpp +++ b/src/database/impl/BlastdbFileIndexReader.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/database/impl/BlastdbFileIndexReader.hpp b/src/database/impl/BlastdbFileIndexReader.hpp index 31a2795..06b1476 100755 --- a/src/database/impl/BlastdbFileIndexReader.hpp +++ b/src/database/impl/BlastdbFileIndexReader.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file BlastdbFileIndexReader.hpp diff --git a/src/database/impl/BlastdbSequenceIterator.cpp b/src/database/impl/BlastdbSequenceIterator.cpp index bd2ed54..813f322 100755 --- a/src/database/impl/BlastdbSequenceIterator.cpp +++ b/src/database/impl/BlastdbSequenceIterator.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ diff --git a/src/database/impl/BlastdbSequenceIterator.hpp b/src/database/impl/BlastdbSequenceIterator.hpp index 935ea61..2a9f894 100755 --- a/src/database/impl/BlastdbSequenceIterator.hpp +++ b/src/database/impl/BlastdbSequenceIterator.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file BlastdbSequenceIterator.hpp diff --git a/src/database/impl/BufferedCachedSequenceDatabase.cpp b/src/database/impl/BufferedCachedSequenceDatabase.cpp index 8db3ccd..101ec9f 100644 --- a/src/database/impl/BufferedCachedSequenceDatabase.cpp +++ b/src/database/impl/BufferedCachedSequenceDatabase.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/database/impl/BufferedCachedSequenceDatabase.hpp b/src/database/impl/BufferedCachedSequenceDatabase.hpp index dca141d..36e8f46 100644 --- a/src/database/impl/BufferedCachedSequenceDatabase.hpp +++ b/src/database/impl/BufferedCachedSequenceDatabase.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file BufferedCachedSequenceDatabase.hpp diff --git a/src/database/impl/BufferedSequenceDatabase.cpp b/src/database/impl/BufferedSequenceDatabase.cpp index 5b51d76..3d48c76 100755 --- a/src/database/impl/BufferedSequenceDatabase.cpp +++ b/src/database/impl/BufferedSequenceDatabase.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/database/impl/BufferedSequenceDatabase.hpp b/src/database/impl/BufferedSequenceDatabase.hpp index ff7c186..c229ea9 100755 --- a/src/database/impl/BufferedSequenceDatabase.hpp +++ b/src/database/impl/BufferedSequenceDatabase.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file BufferedSequenceDatabase.hpp diff --git a/src/database/impl/CompositeSequenceDatabase.cpp b/src/database/impl/CompositeSequenceDatabase.cpp index a5ea47b..a34df9a 100755 --- a/src/database/impl/CompositeSequenceDatabase.cpp +++ b/src/database/impl/CompositeSequenceDatabase.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/database/impl/CompositeSequenceDatabase.hpp b/src/database/impl/CompositeSequenceDatabase.hpp index 232b39b..26c4893 100755 --- a/src/database/impl/CompositeSequenceDatabase.hpp +++ b/src/database/impl/CompositeSequenceDatabase.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file CompositeSequenceDatabase.hpp diff --git a/src/database/impl/DatabaseUtility.hpp b/src/database/impl/DatabaseUtility.hpp index 548d524..59b1f1c 100755 --- a/src/database/impl/DatabaseUtility.hpp +++ b/src/database/impl/DatabaseUtility.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file DatabaseUtility.hpp diff --git a/src/database/impl/DatabaseVisitorComment.hpp b/src/database/impl/DatabaseVisitorComment.hpp index 387bc75..0e2a35a 100644 --- a/src/database/impl/DatabaseVisitorComment.hpp +++ b/src/database/impl/DatabaseVisitorComment.hpp @@ -1,15 +1,15 @@ /* PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file DatabaseVisitorComment.hpp diff --git a/src/database/impl/DefaultAlphabet.cpp b/src/database/impl/DefaultAlphabet.cpp index 05bd8bc..a9531f1 100755 --- a/src/database/impl/DefaultAlphabet.cpp +++ b/src/database/impl/DefaultAlphabet.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/database/impl/FastaDatabaseQuickReader.cpp b/src/database/impl/FastaDatabaseQuickReader.cpp index 0912a3e..b7e5675 100755 --- a/src/database/impl/FastaDatabaseQuickReader.cpp +++ b/src/database/impl/FastaDatabaseQuickReader.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/database/impl/FastaDatabaseQuickReader.hpp b/src/database/impl/FastaDatabaseQuickReader.hpp index 6cbe347..42d22f3 100755 --- a/src/database/impl/FastaDatabaseQuickReader.hpp +++ b/src/database/impl/FastaDatabaseQuickReader.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file FastaDatabaseQuickReader.hpp diff --git a/src/database/impl/FastaSequenceIterator.cpp b/src/database/impl/FastaSequenceIterator.cpp index f9b9906..bae1d98 100755 --- a/src/database/impl/FastaSequenceIterator.cpp +++ b/src/database/impl/FastaSequenceIterator.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/database/impl/FastaSequenceIterator.hpp b/src/database/impl/FastaSequenceIterator.hpp index 6b15b58..42530cf 100755 --- a/src/database/impl/FastaSequenceIterator.hpp +++ b/src/database/impl/FastaSequenceIterator.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file FastaSequenceIterator.hpp diff --git a/src/database/impl/FastaSequenceOutput.cpp b/src/database/impl/FastaSequenceOutput.cpp index 6940fc6..71550a9 100755 --- a/src/database/impl/FastaSequenceOutput.cpp +++ b/src/database/impl/FastaSequenceOutput.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/database/impl/FastaSequenceOutput.hpp b/src/database/impl/FastaSequenceOutput.hpp index a81c9a4..46eab19 100755 --- a/src/database/impl/FastaSequenceOutput.hpp +++ b/src/database/impl/FastaSequenceOutput.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file FastaSequenceOutput.hpp diff --git a/src/database/impl/ReadingFrameSequenceDatabase.cpp b/src/database/impl/ReadingFrameSequenceDatabase.cpp index a670ec6..fdccb2b 100755 --- a/src/database/impl/ReadingFrameSequenceDatabase.cpp +++ b/src/database/impl/ReadingFrameSequenceDatabase.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/database/impl/ReadingFrameSequenceDatabase.hpp b/src/database/impl/ReadingFrameSequenceDatabase.hpp index db7ed4c..0c683a6 100755 --- a/src/database/impl/ReadingFrameSequenceDatabase.hpp +++ b/src/database/impl/ReadingFrameSequenceDatabase.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file ReadingFrameSequenceDatabase.hpp diff --git a/src/database/impl/ReadingFrameSequenceIterator.cpp b/src/database/impl/ReadingFrameSequenceIterator.cpp index da84b2c..7cfc008 100755 --- a/src/database/impl/ReadingFrameSequenceIterator.cpp +++ b/src/database/impl/ReadingFrameSequenceIterator.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/database/impl/ReadingFrameSequenceIterator.hpp b/src/database/impl/ReadingFrameSequenceIterator.hpp index 5bf4bb5..bdcc84a 100755 --- a/src/database/impl/ReadingFrameSequenceIterator.hpp +++ b/src/database/impl/ReadingFrameSequenceIterator.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file ReadingFrameSequenceIterator.hpp diff --git a/src/database/impl/ReverseStrandSequenceIterator.cpp b/src/database/impl/ReverseStrandSequenceIterator.cpp index deb067a..dcfe99c 100755 --- a/src/database/impl/ReverseStrandSequenceIterator.cpp +++ b/src/database/impl/ReverseStrandSequenceIterator.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/database/impl/ReverseStrandSequenceIterator.hpp b/src/database/impl/ReverseStrandSequenceIterator.hpp index cb9c194..a012579 100755 --- a/src/database/impl/ReverseStrandSequenceIterator.hpp +++ b/src/database/impl/ReverseStrandSequenceIterator.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file ReverseStrandSequenceIterator.hpp diff --git a/src/database/impl/Sequence.cpp b/src/database/impl/Sequence.cpp index 667bef3..3c1c9b6 100644 --- a/src/database/impl/Sequence.cpp +++ b/src/database/impl/Sequence.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/database/impl/SequenceTokenizer.cpp b/src/database/impl/SequenceTokenizer.cpp index ca71963..ed7241d 100755 --- a/src/database/impl/SequenceTokenizer.cpp +++ b/src/database/impl/SequenceTokenizer.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/database/impl/SequenceTokenizer.hpp b/src/database/impl/SequenceTokenizer.hpp index 864a20b..efcb1d9 100755 --- a/src/database/impl/SequenceTokenizer.hpp +++ b/src/database/impl/SequenceTokenizer.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file SequenceTokenizer.hpp diff --git a/src/database/impl/StringSequenceIterator.cpp b/src/database/impl/StringSequenceIterator.cpp index b9acfc4..ee99f2a 100755 --- a/src/database/impl/StringSequenceIterator.cpp +++ b/src/database/impl/StringSequenceIterator.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/database/impl/StringSequenceIterator.hpp b/src/database/impl/StringSequenceIterator.hpp index 7811110..8580eb3 100755 --- a/src/database/impl/StringSequenceIterator.hpp +++ b/src/database/impl/StringSequenceIterator.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file StringSequenceIterator.hpp diff --git a/src/database/impl/TruncatedSequenceIterator.hpp b/src/database/impl/TruncatedSequenceIterator.hpp index 5ac5205..a200cc1 100755 --- a/src/database/impl/TruncatedSequenceIterator.hpp +++ b/src/database/impl/TruncatedSequenceIterator.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file TruncatedSequenceIterator.hpp diff --git a/src/designpattern/api/ICommand.hpp b/src/designpattern/api/ICommand.hpp index dab03d4..c8a1218 100755 --- a/src/designpattern/api/ICommand.hpp +++ b/src/designpattern/api/ICommand.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file ICommand.hpp diff --git a/src/designpattern/api/IObserver.hpp b/src/designpattern/api/IObserver.hpp index 987db1e..d7a6f44 100755 --- a/src/designpattern/api/IObserver.hpp +++ b/src/designpattern/api/IObserver.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file IObserver.hpp diff --git a/src/designpattern/api/IProperty.hpp b/src/designpattern/api/IProperty.hpp index 822672a..2d059f2 100755 --- a/src/designpattern/api/IProperty.hpp +++ b/src/designpattern/api/IProperty.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file IProperty.hpp diff --git a/src/designpattern/api/Iterator.hpp b/src/designpattern/api/Iterator.hpp index be0e927..f4ec827 100755 --- a/src/designpattern/api/Iterator.hpp +++ b/src/designpattern/api/Iterator.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file Iterator.hpp diff --git a/src/designpattern/api/SmartPointer.hpp b/src/designpattern/api/SmartPointer.hpp index 43d9d5b..fd3ab85 100755 --- a/src/designpattern/api/SmartPointer.hpp +++ b/src/designpattern/api/SmartPointer.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file SmartPointer.hpp diff --git a/src/designpattern/impl/CommandDispatcher.cpp b/src/designpattern/impl/CommandDispatcher.cpp index 3903a2d..b518de3 100755 --- a/src/designpattern/impl/CommandDispatcher.cpp +++ b/src/designpattern/impl/CommandDispatcher.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/designpattern/impl/CommandDispatcher.hpp b/src/designpattern/impl/CommandDispatcher.hpp index f6bda93..d563c09 100755 --- a/src/designpattern/impl/CommandDispatcher.hpp +++ b/src/designpattern/impl/CommandDispatcher.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file CommandDispatcher.hpp diff --git a/src/designpattern/impl/DirectoryIterator.cpp b/src/designpattern/impl/DirectoryIterator.cpp index 520101e..c25b38c 100755 --- a/src/designpattern/impl/DirectoryIterator.cpp +++ b/src/designpattern/impl/DirectoryIterator.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/designpattern/impl/DirectoryIterator.hpp b/src/designpattern/impl/DirectoryIterator.hpp index 0706fd5..1902569 100755 --- a/src/designpattern/impl/DirectoryIterator.hpp +++ b/src/designpattern/impl/DirectoryIterator.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file DirectoryIterator.hpp diff --git a/src/designpattern/impl/EventCatch.hpp b/src/designpattern/impl/EventCatch.hpp index 022c4c0..cc98133 100755 --- a/src/designpattern/impl/EventCatch.hpp +++ b/src/designpattern/impl/EventCatch.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file EventCatch.hpp diff --git a/src/designpattern/impl/FileLineIterator.cpp b/src/designpattern/impl/FileLineIterator.cpp index c81a97d..cd964f3 100755 --- a/src/designpattern/impl/FileLineIterator.cpp +++ b/src/designpattern/impl/FileLineIterator.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/designpattern/impl/FileLineIterator.hpp b/src/designpattern/impl/FileLineIterator.hpp index fc1a603..253eb96 100755 --- a/src/designpattern/impl/FileLineIterator.hpp +++ b/src/designpattern/impl/FileLineIterator.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file FileLineIterator.hpp diff --git a/src/designpattern/impl/IteratorGet.hpp b/src/designpattern/impl/IteratorGet.hpp index 57b7e1f..563faef 100755 --- a/src/designpattern/impl/IteratorGet.hpp +++ b/src/designpattern/impl/IteratorGet.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file IteratorGet.hpp diff --git a/src/designpattern/impl/ListIterator.hpp b/src/designpattern/impl/ListIterator.hpp index 9e10b52..0b66e17 100755 --- a/src/designpattern/impl/ListIterator.hpp +++ b/src/designpattern/impl/ListIterator.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file ListIterator.hpp diff --git a/src/designpattern/impl/Observer.cpp b/src/designpattern/impl/Observer.cpp index 3903762..ef94e0d 100755 --- a/src/designpattern/impl/Observer.cpp +++ b/src/designpattern/impl/Observer.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/designpattern/impl/Observer.hpp b/src/designpattern/impl/Observer.hpp index f658207..554880e 100755 --- a/src/designpattern/impl/Observer.hpp +++ b/src/designpattern/impl/Observer.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file Observer.hpp diff --git a/src/designpattern/impl/ProductIterator.hpp b/src/designpattern/impl/ProductIterator.hpp index f4058e8..a0bcf82 100755 --- a/src/designpattern/impl/ProductIterator.hpp +++ b/src/designpattern/impl/ProductIterator.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file ProductIterator.hpp diff --git a/src/designpattern/impl/Property.hpp b/src/designpattern/impl/Property.hpp index 55a7039..ad25689 100755 --- a/src/designpattern/impl/Property.hpp +++ b/src/designpattern/impl/Property.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file Property.hpp diff --git a/src/designpattern/impl/RangeIterator.hpp b/src/designpattern/impl/RangeIterator.hpp index b0e7e86..a3c0a55 100644 --- a/src/designpattern/impl/RangeIterator.hpp +++ b/src/designpattern/impl/RangeIterator.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file RangeIterator.hpp diff --git a/src/designpattern/impl/SystemCommand.cpp b/src/designpattern/impl/SystemCommand.cpp index e71b656..6e2a749 100755 --- a/src/designpattern/impl/SystemCommand.cpp +++ b/src/designpattern/impl/SystemCommand.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/designpattern/impl/SystemCommand.hpp b/src/designpattern/impl/SystemCommand.hpp index 9bff4d1..57c7a50 100755 --- a/src/designpattern/impl/SystemCommand.hpp +++ b/src/designpattern/impl/SystemCommand.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file SystemCommand.hpp diff --git a/src/designpattern/impl/TokenizerIterator.cpp b/src/designpattern/impl/TokenizerIterator.cpp index 217e15a..117f282 100755 --- a/src/designpattern/impl/TokenizerIterator.cpp +++ b/src/designpattern/impl/TokenizerIterator.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/designpattern/impl/TokenizerIterator.hpp b/src/designpattern/impl/TokenizerIterator.hpp index fbdab19..d5a38f5 100755 --- a/src/designpattern/impl/TokenizerIterator.hpp +++ b/src/designpattern/impl/TokenizerIterator.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file TokenizerIterator.hpp diff --git a/src/designpattern/impl/Vectorterator.hpp b/src/designpattern/impl/Vectorterator.hpp index f4f3f1b..c1be375 100755 --- a/src/designpattern/impl/Vectorterator.hpp +++ b/src/designpattern/impl/Vectorterator.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file Vectorterator.hpp diff --git a/src/designpattern/impl/WrapperIterator.cpp b/src/designpattern/impl/WrapperIterator.cpp index 05fad60..d1c67b7 100755 --- a/src/designpattern/impl/WrapperIterator.cpp +++ b/src/designpattern/impl/WrapperIterator.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/designpattern/impl/WrapperIterator.hpp b/src/designpattern/impl/WrapperIterator.hpp index 5135ef0..250d7b2 100755 --- a/src/designpattern/impl/WrapperIterator.hpp +++ b/src/designpattern/impl/WrapperIterator.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file WrapperIterator.hpp diff --git a/src/designpattern/impl/XmlReader.cpp b/src/designpattern/impl/XmlReader.cpp index b3c24b1..4550e59 100755 --- a/src/designpattern/impl/XmlReader.cpp +++ b/src/designpattern/impl/XmlReader.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/designpattern/impl/XmlReader.hpp b/src/designpattern/impl/XmlReader.hpp index 84a1833..f9da61e 100755 --- a/src/designpattern/impl/XmlReader.hpp +++ b/src/designpattern/impl/XmlReader.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file XmlReader.hpp diff --git a/src/index/api/IDatabaseIndex.hpp b/src/index/api/IDatabaseIndex.hpp index c2d6ac0..9151e20 100755 --- a/src/index/api/IDatabaseIndex.hpp +++ b/src/index/api/IDatabaseIndex.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file IDatabaseIndex.hpp diff --git a/src/index/api/IOccurrenceIterator.hpp b/src/index/api/IOccurrenceIterator.hpp index 7c1f3bf..85d97f0 100755 --- a/src/index/api/IOccurrenceIterator.hpp +++ b/src/index/api/IOccurrenceIterator.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file IOccurrenceIterator.hpp diff --git a/src/index/impl/AbstractDatabaseIndex.cpp b/src/index/impl/AbstractDatabaseIndex.cpp index 5c5748e..4c1d519 100755 --- a/src/index/impl/AbstractDatabaseIndex.cpp +++ b/src/index/impl/AbstractDatabaseIndex.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/index/impl/AbstractDatabaseIndex.hpp b/src/index/impl/AbstractDatabaseIndex.hpp index ca31b01..9fa53bf 100755 --- a/src/index/impl/AbstractDatabaseIndex.hpp +++ b/src/index/impl/AbstractDatabaseIndex.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file AbstractDatabaseIndex.hpp diff --git a/src/index/impl/DatabaseIndex.cpp b/src/index/impl/DatabaseIndex.cpp index 3a92147..f62a131 100755 --- a/src/index/impl/DatabaseIndex.cpp +++ b/src/index/impl/DatabaseIndex.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/index/impl/DatabaseIndex.hpp b/src/index/impl/DatabaseIndex.hpp index ff2c353..a613f08 100755 --- a/src/index/impl/DatabaseIndex.hpp +++ b/src/index/impl/DatabaseIndex.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file DatabaseIndex.hpp diff --git a/src/index/impl/DatabaseIndexHash.cpp b/src/index/impl/DatabaseIndexHash.cpp index 57d61ad..12d4d5b 100755 --- a/src/index/impl/DatabaseIndexHash.cpp +++ b/src/index/impl/DatabaseIndexHash.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/index/impl/DatabaseIndexHash.hpp b/src/index/impl/DatabaseIndexHash.hpp index 1c5f9bb..6380530 100755 --- a/src/index/impl/DatabaseIndexHash.hpp +++ b/src/index/impl/DatabaseIndexHash.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file DatabaseIndexHash.hpp diff --git a/src/index/impl/DatabaseNucleotidIndex.cpp b/src/index/impl/DatabaseNucleotidIndex.cpp index 95aab9a..b1e5015 100755 --- a/src/index/impl/DatabaseNucleotidIndex.cpp +++ b/src/index/impl/DatabaseNucleotidIndex.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/index/impl/DatabaseNucleotidIndex.hpp b/src/index/impl/DatabaseNucleotidIndex.hpp index 38d2bf4..21565ab 100755 --- a/src/index/impl/DatabaseNucleotidIndex.hpp +++ b/src/index/impl/DatabaseNucleotidIndex.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file DatabaseIndex.hpp diff --git a/src/index/impl/DatabaseNucleotidIndexOptim.cpp b/src/index/impl/DatabaseNucleotidIndexOptim.cpp index 64ac129..c31a4fd 100755 --- a/src/index/impl/DatabaseNucleotidIndexOptim.cpp +++ b/src/index/impl/DatabaseNucleotidIndexOptim.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/index/impl/DatabaseNucleotidIndexOptim.hpp b/src/index/impl/DatabaseNucleotidIndexOptim.hpp index 637cd84..f55334d 100755 --- a/src/index/impl/DatabaseNucleotidIndexOptim.hpp +++ b/src/index/impl/DatabaseNucleotidIndexOptim.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file DatabaseIndex.hpp diff --git a/src/index/impl/FakeDatabaseNucleotideIndex.cpp b/src/index/impl/FakeDatabaseNucleotideIndex.cpp index 27f442f..1f8cd56 100644 --- a/src/index/impl/FakeDatabaseNucleotideIndex.cpp +++ b/src/index/impl/FakeDatabaseNucleotideIndex.cpp @@ -5,13 +5,13 @@ * Copyright (c) 2015 * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/index/impl/FakeDatabaseNucleotideIndex.hpp b/src/index/impl/FakeDatabaseNucleotideIndex.hpp index 6603306..082d185 100644 --- a/src/index/impl/FakeDatabaseNucleotideIndex.hpp +++ b/src/index/impl/FakeDatabaseNucleotideIndex.hpp @@ -5,13 +5,13 @@ * Copyright (c) 2015 * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file FakeDatabaseNucleotideIndex.hpp diff --git a/src/index/impl/retrievall.c b/src/index/impl/retrievall.c index eedf700..90bba99 100755 --- a/src/index/impl/retrievall.c +++ b/src/index/impl/retrievall.c @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/index/impl/retrievall.h b/src/index/impl/retrievall.h index 4b41442..59bb07f 100755 --- a/src/index/impl/retrievall.h +++ b/src/index/impl/retrievall.h @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/launcher/core/PlastCmd.cpp b/src/launcher/core/PlastCmd.cpp index b104ce3..3e5755f 100755 --- a/src/launcher/core/PlastCmd.cpp +++ b/src/launcher/core/PlastCmd.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/launcher/core/PlastCmd.hpp b/src/launcher/core/PlastCmd.hpp index f4f1f8a..9b815fd 100755 --- a/src/launcher/core/PlastCmd.hpp +++ b/src/launcher/core/PlastCmd.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file PlastCmd.hpp diff --git a/src/launcher/core/PlastOptionsParser.cpp b/src/launcher/core/PlastOptionsParser.cpp index b13e4b9..4a433da 100755 --- a/src/launcher/core/PlastOptionsParser.cpp +++ b/src/launcher/core/PlastOptionsParser.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/launcher/core/PlastOptionsParser.hpp b/src/launcher/core/PlastOptionsParser.hpp index 2521a21..5812ef5 100755 --- a/src/launcher/core/PlastOptionsParser.hpp +++ b/src/launcher/core/PlastOptionsParser.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file PlastOptionsParser.hpp diff --git a/src/launcher/jni/Helper.cpp b/src/launcher/jni/Helper.cpp index 46a745b..31b0ce9 100755 --- a/src/launcher/jni/Helper.cpp +++ b/src/launcher/jni/Helper.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include "Helper.hpp" diff --git a/src/launcher/jni/Helper.hpp b/src/launcher/jni/Helper.hpp index 17c3977..98c5e24 100755 --- a/src/launcher/jni/Helper.hpp +++ b/src/launcher/jni/Helper.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #ifndef JNI_HELPER_H_ diff --git a/src/launcher/jni/JniObsfucation.h b/src/launcher/jni/JniObsfucation.h index 7f7348c..61e69a2 100755 --- a/src/launcher/jni/JniObsfucation.h +++ b/src/launcher/jni/JniObsfucation.h @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #ifdef JNI_OBSFUCATION diff --git a/src/launcher/jni/Wrapper.cpp b/src/launcher/jni/Wrapper.cpp index ed733f5..7e94e71 100755 --- a/src/launcher/jni/Wrapper.cpp +++ b/src/launcher/jni/Wrapper.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include "Wrapper.hpp" diff --git a/src/launcher/jni/Wrapper.hpp b/src/launcher/jni/Wrapper.hpp index b926d96..6be8c37 100755 --- a/src/launcher/jni/Wrapper.hpp +++ b/src/launcher/jni/Wrapper.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #ifndef WRAPPER_H_ diff --git a/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp b/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp index a1fd86d..5b06586 100755 --- a/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp +++ b/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include "JniObsfucation.h" diff --git a/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp b/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp index 59981cc..4381a0f 100755 --- a/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp +++ b/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include "JniObsfucation.h" diff --git a/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp b/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp index f015939..159b532 100755 --- a/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp +++ b/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include "JniObsfucation.h" diff --git a/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp b/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp index 066b94e..d356293 100755 --- a/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp +++ b/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include "JniObsfucation.h" diff --git a/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp b/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp index 30f93e9..d14784b 100755 --- a/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp +++ b/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include "JniObsfucation.h" diff --git a/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp b/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp index 0663fb7..e1b87a6 100755 --- a/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp +++ b/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include "JniObsfucation.h" diff --git a/src/launcher/observers/AbstractObserver.hpp b/src/launcher/observers/AbstractObserver.hpp index 7a59087..8c10f35 100755 --- a/src/launcher/observers/AbstractObserver.hpp +++ b/src/launcher/observers/AbstractObserver.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file AbstractObserver.hpp diff --git a/src/launcher/observers/AbstractProgressionObserver.cpp b/src/launcher/observers/AbstractProgressionObserver.cpp index 6541386..5725b5f 100755 --- a/src/launcher/observers/AbstractProgressionObserver.cpp +++ b/src/launcher/observers/AbstractProgressionObserver.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/launcher/observers/AbstractProgressionObserver.hpp b/src/launcher/observers/AbstractProgressionObserver.hpp index 563c376..392aabb 100755 --- a/src/launcher/observers/AbstractProgressionObserver.hpp +++ b/src/launcher/observers/AbstractProgressionObserver.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file AbstractProgressionObserver.hpp diff --git a/src/launcher/observers/AlgoExecutionObserver.cpp b/src/launcher/observers/AlgoExecutionObserver.cpp index aa48141..79184ca 100755 --- a/src/launcher/observers/AlgoExecutionObserver.cpp +++ b/src/launcher/observers/AlgoExecutionObserver.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/launcher/observers/AlgoExecutionObserver.hpp b/src/launcher/observers/AlgoExecutionObserver.hpp index 325509d..56edf10 100755 --- a/src/launcher/observers/AlgoExecutionObserver.hpp +++ b/src/launcher/observers/AlgoExecutionObserver.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file AlgoExecutionObserver.hpp diff --git a/src/launcher/observers/AlgoHitsResultObserver.cpp b/src/launcher/observers/AlgoHitsResultObserver.cpp index 7a21a3a..ec2e0f7 100755 --- a/src/launcher/observers/AlgoHitsResultObserver.cpp +++ b/src/launcher/observers/AlgoHitsResultObserver.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/launcher/observers/AlgoHitsResultObserver.hpp b/src/launcher/observers/AlgoHitsResultObserver.hpp index 8122305..dc06109 100755 --- a/src/launcher/observers/AlgoHitsResultObserver.hpp +++ b/src/launcher/observers/AlgoHitsResultObserver.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file AlgoHitsResultObserver.hpp diff --git a/src/launcher/observers/AlgoResultObserver.cpp b/src/launcher/observers/AlgoResultObserver.cpp index 5c5fdec..b3f63cc 100755 --- a/src/launcher/observers/AlgoResultObserver.cpp +++ b/src/launcher/observers/AlgoResultObserver.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/launcher/observers/AlgoResultObserver.hpp b/src/launcher/observers/AlgoResultObserver.hpp index a757950..7001366 100755 --- a/src/launcher/observers/AlgoResultObserver.hpp +++ b/src/launcher/observers/AlgoResultObserver.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file AlgoResultObserver.hpp diff --git a/src/launcher/observers/BargraphObserver.cpp b/src/launcher/observers/BargraphObserver.cpp index b9be079..b52735f 100755 --- a/src/launcher/observers/BargraphObserver.cpp +++ b/src/launcher/observers/BargraphObserver.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/launcher/observers/BargraphObserver.hpp b/src/launcher/observers/BargraphObserver.hpp index 2b7a97d..6efde27 100755 --- a/src/launcher/observers/BargraphObserver.hpp +++ b/src/launcher/observers/BargraphObserver.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file BargraphObserver.hpp diff --git a/src/launcher/observers/FileProgressionObserver.cpp b/src/launcher/observers/FileProgressionObserver.cpp index d9ddf1f..85b791e 100755 --- a/src/launcher/observers/FileProgressionObserver.cpp +++ b/src/launcher/observers/FileProgressionObserver.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/launcher/observers/FileProgressionObserver.hpp b/src/launcher/observers/FileProgressionObserver.hpp index 5aeb177..c4489e9 100755 --- a/src/launcher/observers/FileProgressionObserver.hpp +++ b/src/launcher/observers/FileProgressionObserver.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file FileProgressionObserver.hpp diff --git a/src/misc/api/PlastStrings.hpp b/src/misc/api/PlastStrings.hpp index 472305c..c136cde 100755 --- a/src/misc/api/PlastStrings.hpp +++ b/src/misc/api/PlastStrings.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file PlastStrings.hpp diff --git a/src/misc/api/PlastStringsRepository.hpp b/src/misc/api/PlastStringsRepository.hpp index 3ca7066..d23a679 100755 --- a/src/misc/api/PlastStringsRepository.hpp +++ b/src/misc/api/PlastStringsRepository.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file PlastStringsRepository.hpp diff --git a/src/misc/api/RangeTree.hpp b/src/misc/api/RangeTree.hpp index 834a0f3..e9c6862 100755 --- a/src/misc/api/RangeTree.hpp +++ b/src/misc/api/RangeTree.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file RangeTree.hpp diff --git a/src/misc/api/Vector.hpp b/src/misc/api/Vector.hpp index d8c2b07..4b20063 100755 --- a/src/misc/api/Vector.hpp +++ b/src/misc/api/Vector.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file Vector.hpp diff --git a/src/misc/api/macros.hpp b/src/misc/api/macros.hpp index 72464c5..3c75289 100755 --- a/src/misc/api/macros.hpp +++ b/src/misc/api/macros.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #ifndef _MACROS_HPP_ diff --git a/src/misc/api/obsfucation.h b/src/misc/api/obsfucation.h index 515dff9..c5c62a6 100644 --- a/src/misc/api/obsfucation.h +++ b/src/misc/api/obsfucation.h @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** This file has been generated by extracted symbols from the generated dynamic library. diff --git a/src/misc/api/types.hpp b/src/misc/api/types.hpp index e0a8a4b..deea4bc 100755 --- a/src/misc/api/types.hpp +++ b/src/misc/api/types.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file types.hpp diff --git a/src/misc/api/version.hpp b/src/misc/api/version.hpp index 566267e..c553f6f 100755 --- a/src/misc/api/version.hpp +++ b/src/misc/api/version.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #ifndef _VERSION_HPP_ diff --git a/src/misc/impl/ObsfucatedString.hpp b/src/misc/impl/ObsfucatedString.hpp index afbdf96..4cd95eb 100644 --- a/src/misc/impl/ObsfucatedString.hpp +++ b/src/misc/impl/ObsfucatedString.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file ObsfucatedString.hpp diff --git a/src/misc/impl/Option.hpp b/src/misc/impl/Option.hpp index ff69da0..b5bcd47 100755 --- a/src/misc/impl/Option.hpp +++ b/src/misc/impl/Option.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file Option.hpp diff --git a/src/misc/impl/OptionsParser.cpp b/src/misc/impl/OptionsParser.cpp index 8ef42f2..5536daa 100755 --- a/src/misc/impl/OptionsParser.cpp +++ b/src/misc/impl/OptionsParser.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ diff --git a/src/misc/impl/OptionsParser.hpp b/src/misc/impl/OptionsParser.hpp index 3f8111e..480fbbd 100755 --- a/src/misc/impl/OptionsParser.hpp +++ b/src/misc/impl/OptionsParser.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file OptionsParser.hpp diff --git a/src/misc/impl/RangeTree.cpp b/src/misc/impl/RangeTree.cpp index cd2e6cc..58ba15f 100644 --- a/src/misc/impl/RangeTree.cpp +++ b/src/misc/impl/RangeTree.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #if 0 diff --git a/src/os/api/IFile.hpp b/src/os/api/IFile.hpp index 8a2aaee..541ba02 100755 --- a/src/os/api/IFile.hpp +++ b/src/os/api/IFile.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file IFile.hpp diff --git a/src/os/api/IMemory.hpp b/src/os/api/IMemory.hpp index df4e440..2852607 100755 --- a/src/os/api/IMemory.hpp +++ b/src/os/api/IMemory.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file IMemory.hpp diff --git a/src/os/api/IMemoryFile.hpp b/src/os/api/IMemoryFile.hpp index d71550a..6c1d133 100755 --- a/src/os/api/IMemoryFile.hpp +++ b/src/os/api/IMemoryFile.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file IMemoryFile.hpp diff --git a/src/os/api/IOsFactory.hpp b/src/os/api/IOsFactory.hpp index 94e19c3..a7005d3 100755 --- a/src/os/api/IOsFactory.hpp +++ b/src/os/api/IOsFactory.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file IOsFactory.hpp diff --git a/src/os/api/IResource.hpp b/src/os/api/IResource.hpp index 1c6bf92..bc6fd23 100755 --- a/src/os/api/IResource.hpp +++ b/src/os/api/IResource.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file IResource.hpp diff --git a/src/os/api/IThread.hpp b/src/os/api/IThread.hpp index d827747..fb5c70e 100755 --- a/src/os/api/IThread.hpp +++ b/src/os/api/IThread.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file IThread.hpp diff --git a/src/os/api/ITime.hpp b/src/os/api/ITime.hpp index b7f4901..0dec9af 100755 --- a/src/os/api/ITime.hpp +++ b/src/os/api/ITime.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file ITime.hpp diff --git a/src/os/impl/CommonOsImpl.hpp b/src/os/impl/CommonOsImpl.hpp index e2f3e6d..8361c33 100755 --- a/src/os/impl/CommonOsImpl.hpp +++ b/src/os/impl/CommonOsImpl.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file CommonOsImpl.hpp diff --git a/src/os/impl/DefaultOsFactory.cpp b/src/os/impl/DefaultOsFactory.cpp index 8ccdc8b..fba6338 100755 --- a/src/os/impl/DefaultOsFactory.cpp +++ b/src/os/impl/DefaultOsFactory.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/os/impl/DefaultOsFactory.hpp b/src/os/impl/DefaultOsFactory.hpp index b48d4e9..5be6831 100755 --- a/src/os/impl/DefaultOsFactory.hpp +++ b/src/os/impl/DefaultOsFactory.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file DefaultOsFactory.hpp diff --git a/src/os/impl/LinuxFile.cpp b/src/os/impl/LinuxFile.cpp index 842b3ed..aa208cc 100755 --- a/src/os/impl/LinuxFile.cpp +++ b/src/os/impl/LinuxFile.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #ifdef __LINUX__ diff --git a/src/os/impl/LinuxFile.hpp b/src/os/impl/LinuxFile.hpp index 3539582..2191fb1 100755 --- a/src/os/impl/LinuxFile.hpp +++ b/src/os/impl/LinuxFile.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file LinuxFile.hpp diff --git a/src/os/impl/LinuxMemory.cpp b/src/os/impl/LinuxMemory.cpp index 42413b6..fc8aed2 100755 --- a/src/os/impl/LinuxMemory.cpp +++ b/src/os/impl/LinuxMemory.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #ifdef __LINUX__ diff --git a/src/os/impl/LinuxMemory.hpp b/src/os/impl/LinuxMemory.hpp index 79f5d0f..986a567 100755 --- a/src/os/impl/LinuxMemory.hpp +++ b/src/os/impl/LinuxMemory.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file LinuxMemory.hpp diff --git a/src/os/impl/LinuxMemoryFile.cpp b/src/os/impl/LinuxMemoryFile.cpp index 2fc8372..36dc581 100755 --- a/src/os/impl/LinuxMemoryFile.cpp +++ b/src/os/impl/LinuxMemoryFile.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #ifdef __LINUX__ diff --git a/src/os/impl/LinuxMemoryFile.hpp b/src/os/impl/LinuxMemoryFile.hpp index 1153977..f46fec7 100755 --- a/src/os/impl/LinuxMemoryFile.hpp +++ b/src/os/impl/LinuxMemoryFile.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file LinuxMemoryFile.hpp diff --git a/src/os/impl/LinuxThread.cpp b/src/os/impl/LinuxThread.cpp index ed780ba..6dea7dc 100755 --- a/src/os/impl/LinuxThread.cpp +++ b/src/os/impl/LinuxThread.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #ifdef __LINUX__ diff --git a/src/os/impl/LinuxThread.hpp b/src/os/impl/LinuxThread.hpp index 98dc4f5..50dcbb9 100755 --- a/src/os/impl/LinuxThread.hpp +++ b/src/os/impl/LinuxThread.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file LinuxThread.hpp diff --git a/src/os/impl/LinuxTime.cpp b/src/os/impl/LinuxTime.cpp index 773d031..f6496e8 100755 --- a/src/os/impl/LinuxTime.cpp +++ b/src/os/impl/LinuxTime.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #ifdef __LINUX__ diff --git a/src/os/impl/LinuxTime.hpp b/src/os/impl/LinuxTime.hpp index 97d75af..9e044e1 100755 --- a/src/os/impl/LinuxTime.hpp +++ b/src/os/impl/LinuxTime.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file LinuxTime.hpp diff --git a/src/os/impl/MacOsFile.cpp b/src/os/impl/MacOsFile.cpp index b962f42..b883831 100755 --- a/src/os/impl/MacOsFile.cpp +++ b/src/os/impl/MacOsFile.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #ifdef __DARWIN__ diff --git a/src/os/impl/MacOsFile.hpp b/src/os/impl/MacOsFile.hpp index 46d6001..43df54b 100755 --- a/src/os/impl/MacOsFile.hpp +++ b/src/os/impl/MacOsFile.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file MacOsFile.hpp diff --git a/src/os/impl/MacOsMemory.cpp b/src/os/impl/MacOsMemory.cpp index 91565fd..4f7e0d2 100755 --- a/src/os/impl/MacOsMemory.cpp +++ b/src/os/impl/MacOsMemory.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #ifdef __DARWIN__ diff --git a/src/os/impl/MacOsMemory.hpp b/src/os/impl/MacOsMemory.hpp index e9a2f55..e72246b 100755 --- a/src/os/impl/MacOsMemory.hpp +++ b/src/os/impl/MacOsMemory.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file MacOsMemory.hpp diff --git a/src/os/impl/MacOsMemoryFile.cpp b/src/os/impl/MacOsMemoryFile.cpp index fafe721..61eb13c 100755 --- a/src/os/impl/MacOsMemoryFile.cpp +++ b/src/os/impl/MacOsMemoryFile.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #ifdef __DARWIN__ diff --git a/src/os/impl/MacOsMemoryFile.hpp b/src/os/impl/MacOsMemoryFile.hpp index 964daf8..498daa4 100755 --- a/src/os/impl/MacOsMemoryFile.hpp +++ b/src/os/impl/MacOsMemoryFile.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file LinuxMemoryFile.hpp diff --git a/src/os/impl/MacOsThread.cpp b/src/os/impl/MacOsThread.cpp index b20e249..fe353c1 100755 --- a/src/os/impl/MacOsThread.cpp +++ b/src/os/impl/MacOsThread.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #ifdef __DARWIN__ diff --git a/src/os/impl/MacOsThread.hpp b/src/os/impl/MacOsThread.hpp index c78be27..e0f91f1 100755 --- a/src/os/impl/MacOsThread.hpp +++ b/src/os/impl/MacOsThread.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file MacOsThread.hpp diff --git a/src/os/impl/MacOsTime.cpp b/src/os/impl/MacOsTime.cpp index 0f8b368..42e4e89 100755 --- a/src/os/impl/MacOsTime.cpp +++ b/src/os/impl/MacOsTime.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #ifdef __DARWIN__ diff --git a/src/os/impl/MacOsTime.hpp b/src/os/impl/MacOsTime.hpp index 8f27264..3bceee9 100755 --- a/src/os/impl/MacOsTime.hpp +++ b/src/os/impl/MacOsTime.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file MacOsTime.hpp diff --git a/src/os/impl/TimeTools.hpp b/src/os/impl/TimeTools.hpp index 7ea20f0..4909534 100755 --- a/src/os/impl/TimeTools.hpp +++ b/src/os/impl/TimeTools.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file TimeTools.hpp diff --git a/src/os/impl/WindowsFile.cpp b/src/os/impl/WindowsFile.cpp index 8ece18d..c333a43 100755 --- a/src/os/impl/WindowsFile.cpp +++ b/src/os/impl/WindowsFile.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #ifdef __WINDOWS__ diff --git a/src/os/impl/WindowsFile.hpp b/src/os/impl/WindowsFile.hpp index 6203802..9e1f6d9 100755 --- a/src/os/impl/WindowsFile.hpp +++ b/src/os/impl/WindowsFile.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file WindowsFile.hpp diff --git a/src/os/impl/WindowsMemory.cpp b/src/os/impl/WindowsMemory.cpp index 1b88b2d..40a3990 100755 --- a/src/os/impl/WindowsMemory.cpp +++ b/src/os/impl/WindowsMemory.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #ifdef __WINDOWS__ diff --git a/src/os/impl/WindowsMemory.hpp b/src/os/impl/WindowsMemory.hpp index ff1b2ab..10ec59f 100755 --- a/src/os/impl/WindowsMemory.hpp +++ b/src/os/impl/WindowsMemory.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file WindowsMemory.hpp diff --git a/src/os/impl/WindowsMemoryFile.cpp b/src/os/impl/WindowsMemoryFile.cpp index ae2cfc0..ba1693a 100755 --- a/src/os/impl/WindowsMemoryFile.cpp +++ b/src/os/impl/WindowsMemoryFile.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #ifdef __WINDOWS__ diff --git a/src/os/impl/WindowsMemoryFile.hpp b/src/os/impl/WindowsMemoryFile.hpp index 8a76083..ab3aaa4 100755 --- a/src/os/impl/WindowsMemoryFile.hpp +++ b/src/os/impl/WindowsMemoryFile.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file WindowsMemoryFile.hpp diff --git a/src/os/impl/WindowsThread.cpp b/src/os/impl/WindowsThread.cpp index d6d013b..d0589c1 100755 --- a/src/os/impl/WindowsThread.cpp +++ b/src/os/impl/WindowsThread.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #ifdef __WINDOWS__ diff --git a/src/os/impl/WindowsThread.hpp b/src/os/impl/WindowsThread.hpp index 8bfc92b..fbc9b1f 100755 --- a/src/os/impl/WindowsThread.hpp +++ b/src/os/impl/WindowsThread.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file WindowsThread.hpp diff --git a/src/os/impl/WindowsTime.cpp b/src/os/impl/WindowsTime.cpp index 949f0e4..bd49a30 100755 --- a/src/os/impl/WindowsTime.cpp +++ b/src/os/impl/WindowsTime.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #ifdef __WINDOWS__ diff --git a/src/os/impl/WindowsTime.hpp b/src/os/impl/WindowsTime.hpp index bd9e148..884d0fd 100755 --- a/src/os/impl/WindowsTime.hpp +++ b/src/os/impl/WindowsTime.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file WindowsTime.hpp diff --git a/src/os/impl/ZlibFile.cpp b/src/os/impl/ZlibFile.cpp index 2da60bd..56f92c1 100755 --- a/src/os/impl/ZlibFile.cpp +++ b/src/os/impl/ZlibFile.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #if 0 diff --git a/src/os/impl/ZlibFile.hpp b/src/os/impl/ZlibFile.hpp index ed149bd..53bb898 100755 --- a/src/os/impl/ZlibFile.hpp +++ b/src/os/impl/ZlibFile.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file LinuxFile.hpp diff --git a/src/seed/api/ISeed.hpp b/src/seed/api/ISeed.hpp index bfef0d5..86970c8 100755 --- a/src/seed/api/ISeed.hpp +++ b/src/seed/api/ISeed.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file ISeed.hpp diff --git a/src/seed/api/ISeedIterator.hpp b/src/seed/api/ISeedIterator.hpp index 8924582..e7f452f 100755 --- a/src/seed/api/ISeedIterator.hpp +++ b/src/seed/api/ISeedIterator.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file ISeedIterator.hpp diff --git a/src/seed/api/ISeedModel.hpp b/src/seed/api/ISeedModel.hpp index ef2f6d3..19a3d50 100755 --- a/src/seed/api/ISeedModel.hpp +++ b/src/seed/api/ISeedModel.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file ISeedModel.hpp diff --git a/src/seed/impl/AbstractSeedIterator.cpp b/src/seed/impl/AbstractSeedIterator.cpp index 8c8861b..a327fbd 100755 --- a/src/seed/impl/AbstractSeedIterator.cpp +++ b/src/seed/impl/AbstractSeedIterator.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/seed/impl/AbstractSeedIterator.hpp b/src/seed/impl/AbstractSeedIterator.hpp index 893a0e9..587a215 100755 --- a/src/seed/impl/AbstractSeedIterator.hpp +++ b/src/seed/impl/AbstractSeedIterator.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file AbstractSeedIterator.hpp diff --git a/src/seed/impl/AbstractSeedModel.cpp b/src/seed/impl/AbstractSeedModel.cpp index 3ea4426..9f5aaac 100755 --- a/src/seed/impl/AbstractSeedModel.cpp +++ b/src/seed/impl/AbstractSeedModel.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/seed/impl/AbstractSeedModel.hpp b/src/seed/impl/AbstractSeedModel.hpp index 74546c3..a2f4e5a 100755 --- a/src/seed/impl/AbstractSeedModel.hpp +++ b/src/seed/impl/AbstractSeedModel.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file AbstractSeedModel.hpp diff --git a/src/seed/impl/BasicSeedModel.cpp b/src/seed/impl/BasicSeedModel.cpp index b02ed41..d460b05 100755 --- a/src/seed/impl/BasicSeedModel.cpp +++ b/src/seed/impl/BasicSeedModel.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/seed/impl/BasicSeedModel.hpp b/src/seed/impl/BasicSeedModel.hpp index db8fbd7..0f758af 100755 --- a/src/seed/impl/BasicSeedModel.hpp +++ b/src/seed/impl/BasicSeedModel.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file BasicSeedModel.hpp diff --git a/src/seed/impl/SubSeedModel.cpp b/src/seed/impl/SubSeedModel.cpp index 933099c..3c7bc9c 100755 --- a/src/seed/impl/SubSeedModel.cpp +++ b/src/seed/impl/SubSeedModel.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/seed/impl/SubSeedModel.hpp b/src/seed/impl/SubSeedModel.hpp index 3cd94e8..2d50c65 100755 --- a/src/seed/impl/SubSeedModel.hpp +++ b/src/seed/impl/SubSeedModel.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \file SubSeedModel.hpp diff --git a/src/seg/api/genwin.h b/src/seg/api/genwin.h index 4298243..0a903dd 100755 --- a/src/seg/api/genwin.h +++ b/src/seg/api/genwin.h @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #ifndef _GENWIN_H_ diff --git a/src/seg/api/seg.h b/src/seg/api/seg.h index 181dd26..32328c2 100755 --- a/src/seg/api/seg.h +++ b/src/seg/api/seg.h @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #ifndef SEG_H_ diff --git a/src/seg/impl/DustMasker.cpp b/src/seg/impl/DustMasker.cpp index c2f59db..ecd3d57 100644 --- a/src/seg/impl/DustMasker.cpp +++ b/src/seg/impl/DustMasker.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include "DustMasker.hpp" diff --git a/src/seg/impl/DustMasker.hpp b/src/seg/impl/DustMasker.hpp index 25f6e08..fe2c2a8 100644 --- a/src/seg/impl/DustMasker.hpp +++ b/src/seg/impl/DustMasker.hpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #ifndef DUSTMASKER_HPP_ diff --git a/src/seg/impl/dust.c b/src/seg/impl/dust.c index 1d59d4e..3f2c032 100755 --- a/src/seg/impl/dust.c +++ b/src/seg/impl/dust.c @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/seg/impl/genwin.c b/src/seg/impl/genwin.c index 63a4ab0..1a4c24f 100755 --- a/src/seg/impl/genwin.c +++ b/src/seg/impl/genwin.c @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/src/seg/impl/lnfac.pri b/src/seg/impl/lnfac.pri index 9165839..c713901 100755 --- a/src/seg/impl/lnfac.pri +++ b/src/seg/impl/lnfac.pri @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ double lnfac[] = diff --git a/src/seg/impl/seg.c b/src/seg/impl/seg.c index cfadc5f..87528dc 100755 --- a/src/seg/impl/seg.c +++ b/src/seg/impl/seg.c @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include diff --git a/test/unit/src/TestAlgoInitializer.cpp b/test/unit/src/TestAlgoInitializer.cpp index 0866d22..38efefa 100755 --- a/test/unit/src/TestAlgoInitializer.cpp +++ b/test/unit/src/TestAlgoInitializer.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include "cppunit.h" diff --git a/test/unit/src/TestAlignment.cpp b/test/unit/src/TestAlignment.cpp index 1e4a63f..b04c67a 100755 --- a/test/unit/src/TestAlignment.cpp +++ b/test/unit/src/TestAlignment.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include "cppunit.h" diff --git a/test/unit/src/TestBugs.cpp b/test/unit/src/TestBugs.cpp index 87a35f5..051c459 100755 --- a/test/unit/src/TestBugs.cpp +++ b/test/unit/src/TestBugs.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include "cppunit.h" diff --git a/test/unit/src/TestDatabaseCompare.cpp b/test/unit/src/TestDatabaseCompare.cpp index 1578fc1..cd36d97 100755 --- a/test/unit/src/TestDatabaseCompare.cpp +++ b/test/unit/src/TestDatabaseCompare.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include "cppunit.h" diff --git a/test/unit/src/TestDatabaseFiltering.cpp b/test/unit/src/TestDatabaseFiltering.cpp index 39e8043..2225123 100755 --- a/test/unit/src/TestDatabaseFiltering.cpp +++ b/test/unit/src/TestDatabaseFiltering.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include "cppunit.h" diff --git a/test/unit/src/TestDatabaseIndex.cpp b/test/unit/src/TestDatabaseIndex.cpp index 15d2fa4..d66e641 100755 --- a/test/unit/src/TestDatabaseIndex.cpp +++ b/test/unit/src/TestDatabaseIndex.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include "cppunit.h" diff --git a/test/unit/src/TestDesignPattern.cpp b/test/unit/src/TestDesignPattern.cpp index 6da8c3c..737c510 100755 --- a/test/unit/src/TestDesignPattern.cpp +++ b/test/unit/src/TestDesignPattern.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include "cppunit.h" diff --git a/test/unit/src/TestFilter.cpp b/test/unit/src/TestFilter.cpp index 38a48aa..ea164ec 100755 --- a/test/unit/src/TestFilter.cpp +++ b/test/unit/src/TestFilter.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include "cppunit.h" diff --git a/test/unit/src/TestMisc.cpp b/test/unit/src/TestMisc.cpp index de4bd13..01ea428 100755 --- a/test/unit/src/TestMisc.cpp +++ b/test/unit/src/TestMisc.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #if 0 diff --git a/test/unit/src/TestOs.cpp b/test/unit/src/TestOs.cpp index db9d7ee..6156bbd 100755 --- a/test/unit/src/TestOs.cpp +++ b/test/unit/src/TestOs.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include "cppunit.h" diff --git a/test/unit/src/TestPlast.cpp b/test/unit/src/TestPlast.cpp index 36e1457..9a5e25b 100755 --- a/test/unit/src/TestPlast.cpp +++ b/test/unit/src/TestPlast.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include "cppunit.h" diff --git a/test/unit/src/TestPlastLike.cpp b/test/unit/src/TestPlastLike.cpp index 44ce9ed..87f1c97 100755 --- a/test/unit/src/TestPlastLike.cpp +++ b/test/unit/src/TestPlastLike.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include "cppunit.h" diff --git a/test/unit/src/TestPlastStrings.cpp b/test/unit/src/TestPlastStrings.cpp index bc1c1ea..ad3bfc4 100755 --- a/test/unit/src/TestPlastStrings.cpp +++ b/test/unit/src/TestPlastStrings.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include "cppunit.h" diff --git a/test/unit/src/TestScoreMatrix.cpp b/test/unit/src/TestScoreMatrix.cpp index 2deeca9..7f92379 100755 --- a/test/unit/src/TestScoreMatrix.cpp +++ b/test/unit/src/TestScoreMatrix.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include "cppunit.h" diff --git a/test/unit/src/TestSeedIterator.cpp b/test/unit/src/TestSeedIterator.cpp index 3df7f6f..5bcaccd 100755 --- a/test/unit/src/TestSeedIterator.cpp +++ b/test/unit/src/TestSeedIterator.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include "cppunit.h" diff --git a/test/unit/src/TestSeedModel.cpp b/test/unit/src/TestSeedModel.cpp index f7745a7..b12f2d1 100755 --- a/test/unit/src/TestSeedModel.cpp +++ b/test/unit/src/TestSeedModel.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include "cppunit.h" diff --git a/test/unit/src/TestSequenceDatabase.cpp b/test/unit/src/TestSequenceDatabase.cpp index 8270154..a88e0e5 100755 --- a/test/unit/src/TestSequenceDatabase.cpp +++ b/test/unit/src/TestSequenceDatabase.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include "cppunit.h" diff --git a/test/unit/src/TestSequenceIterator.cpp b/test/unit/src/TestSequenceIterator.cpp index d83401a..16a0b6b 100755 --- a/test/unit/src/TestSequenceIterator.cpp +++ b/test/unit/src/TestSequenceIterator.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include "cppunit.h" diff --git a/test/unit/src/TestSequenceMask.cpp b/test/unit/src/TestSequenceMask.cpp index 265ac16..ad54cb7 100755 --- a/test/unit/src/TestSequenceMask.cpp +++ b/test/unit/src/TestSequenceMask.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include "cppunit.h" diff --git a/test/unit/src/cppunit.h b/test/unit/src/cppunit.h index ac4e3a5..3e34d23 100755 --- a/test/unit/src/cppunit.h +++ b/test/unit/src/cppunit.h @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #ifndef CPPUNIT_H_ diff --git a/test/unit/src/main.cpp b/test/unit/src/main.cpp index 6cd9d30..3aaf5ec 100755 --- a/test/unit/src/main.cpp +++ b/test/unit/src/main.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ #include "cppunit.h" diff --git a/tools/FastaBlastComparaison.cpp b/tools/FastaBlastComparaison.cpp index efead52..0ffed73 100755 --- a/tools/FastaBlastComparaison.cpp +++ b/tools/FastaBlastComparaison.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /********************************************************************************/ diff --git a/tools/PlastCmd.cpp b/tools/PlastCmd.cpp index a48964f..d46d324 100755 --- a/tools/PlastCmd.cpp +++ b/tools/PlastCmd.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /** \mainpage PlastCmd Documentation diff --git a/tools/makeplastdb.cpp b/tools/makeplastdb.cpp index f2a9f3b..ed2b649 100755 --- a/tools/makeplastdb.cpp +++ b/tools/makeplastdb.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /********************************************************************************/ diff --git a/tools/model.cpp b/tools/model.cpp index c991cc8..dbe164c 100755 --- a/tools/model.cpp +++ b/tools/model.cpp @@ -1,17 +1,17 @@ /***************************************************************************** * * * PLAST : Parallel Local Alignment Search Tool * - * Version 2.0, released July 2011 * - * Copyright (c) 2011 * + * Version 2.3, released November 2015 * + * Copyright (c) 2009-2015 Inria-Cnrs-Ens * * * * PLAST is free software; you can redistribute it and/or modify it under * - * the CECILL version 2 License, that is compatible with the GNU General * + * the Affero GPL ver 3 License, that is compatible with the GNU General * * Public License * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * - * CECILL version 2 License for more details. * + * Affero GPL ver 3 License for more details. * *****************************************************************************/ /********************************************************************************/