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Segmentation fault on new NCBI nr and nt databases (2021) #9

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xhu556 opened this issue Feb 6, 2021 · 1 comment
Open

Segmentation fault on new NCBI nr and nt databases (2021) #9

xhu556 opened this issue Feb 6, 2021 · 1 comment

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@xhu556
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xhu556 commented Feb 6, 2021

plast -p plastp -d ../../ncbi_nr/nr.pal -i db/tursiops.fa -o test.fa.nr.plastp.xml -e 5e-5 -a 8 -max-hsp-per-hit 1 -max-hit-per-query 10 -seeds-use-ratio 100 -outfmt 4 -force-query-order 1000 -bargraph
Segmentation fault (core dumped)

plast -p plastn -i plast/db/query.fa -d../../ncbi_nt/nt.nal -o out.csv
Segmentation fault (core dumped)

@ZhihaoXie
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I encountered similar error,and my cmd is "plast -p plastn -e 1e-5 -a 10 -max-hsp-per-hit 250 -max-hit-per-query 250 -i Anaplasma_marginale.0.5.fa -d db_noVirus_v1.fa.nal -o Anaplasma_marginale.blastto.db.tsv". And error message: Segmentation fault (core dumped)
How do I solve this error?
Tip: plast v2.3.1

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