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This repository has been archived by the owner on Mar 16, 2022. It is now read-only.
I try to change this parameter, but I find that it doesn't seem to work. I get this conclusion from the output in the stdout file.
Please notice the
bold large word
below.
My question is : does my parameter work or not?
Building index for preads.37
Kshift=28
BSHIFT=8
TooFrequent=50
(Kshift-1)/BSHIFT + (TooFrequent < INT32_MAX)=4
sizeof(KmerPos)=16
nreads=45118
Kmer=14
block->reads[nreads].boff=400045653
kmers=399414001
sizeof(KmerPos)*(kmers+1)=6390624032
Allocated 399414002 of 16 (6390624032 bytes) at 0x2b37b1e7e010
Kmer count = 399,414,001
Using 11.90Gb of space
Revised kmer count = 342,813,299
Index occupies 5.11Gb
Comparing preads.79 to preads.37
Capping mutual k-mer matches over 10000 (effectively -t100)
Hit count = 2,132,012,232
Highwater of 68.64Gb space
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