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ERROR in converting gGrange to vcf #45

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9421g opened this issue Nov 15, 2024 · 0 comments
Open

ERROR in converting gGrange to vcf #45

9421g opened this issue Nov 15, 2024 · 0 comments

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@9421g
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9421g commented Nov 15, 2024

I want to add PARID into the INFO field of an SV vcf file with breakend notation

>     StructuralVariantAnnotation:::breakpointGRangesToVCF(
+         breakpointRanges(
+             VariantAnnotation::readVcf('SV.delly.somatic.vcf'),
+             inferMissingBreakends = TRUE
+         )
+     )
Error: Elements 1, 2, 3, 4, 5, ... of width(gr) == 1 are not true
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