diff --git a/work/export.sh b/work/export.sh index a1efaabb..61b62880 100755 --- a/work/export.sh +++ b/work/export.sh @@ -14,7 +14,8 @@ $JAVA_HOME/bin/java -Xmx64g -Dpaxtools.CollectionProvider=org.biopax.paxtools.tr cat physical_entities.json | jq -cS 'map(select(.generic)) | reduce .[] as $o ({}; . + {($o.uri): {name: $o.name, label:$o.label, synonyms:$o."hgnc.symbol"}})' > generic-physical-entity-map.json rename 's/txt\.sif/sif/' *.txt.sif -gzip *.txt *.sif *.gmt physical_entities.json +#compress the generated files except: blacklist.txt, generic-physical-entity-map.json +gzip pc-*.sif pc-*.gmt pc-*.txt datasources.txt pathways.txt uniprot.txt physical_entities.json cd .. echo "export.sh completed." \ No newline at end of file