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package.json
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{
"name": "grounding-search",
"version": "1.4.0",
"description": "Biological entity grounding search service",
"repository": {
"type": "git",
"url": "https://github.com/PathwayCommons/grounding-search.git"
},
"bugs": {
"url": "https://github.com/PathwayCommons/grounding-search/issues"
},
"homepage": "https://github.com/PathwayCommons/grounding-search",
"scripts": {
"start": "node -r esm ./src/server",
"inspect": "node -r esm --inspect-brk ./src/server",
"lint:js": "eslint ./src",
"lint": "run-s lint:*",
"watch": "nodemon -r esm src/server/index.js",
"test": "mocha -r esm --exclude test/uniprot.js",
"test:sample": "cross-env TESTS_BUILD_INDEX=true INPUT_PATH=test/input/ INDEX=graundingsearch-test run-s test",
"test:quality": "mocha -r esm test/aggregate-quality.js",
"test:quality:exit0": "mocha -r esm test/aggregate-quality.js || echo Some quality tests failed",
"test:quality:csv": "mocha -r esm test/aggregate-quality.js --reporter test/util/quality-reporter.js",
"test:inputgen": "run-s test:inputgen:chebi test:inputgen:ncbi",
"test:inputgen:uniprot": "node -r esm test/input-generator/uniprot",
"test:inputgen:chebi": "node -r esm test/input-generator/chebi",
"test:inputgen:ncbi": "node -r esm test/input-generator/ncbi",
"benchmark": "run-s benchmark:*",
"benchmark:uniprot": "node -r esm benchmark/uniprot",
"benchmark:chebi": "node -r esm benchmark/chebi",
"benchmark:ncbi": "node -r esm benchmark/ncbi",
"update": "run-s update:uniprot update:chebi update:ncbi update:famplex",
"refresh": "run-s clear update",
"update:famplex": "node -r esm src/server/datasource/cli update famplex",
"update:uniprot": "node -r esm src/server/datasource/cli update uniprot",
"update:chebi": "node -r esm src/server/datasource/cli update chebi",
"update:ncbi": "node -r esm src/server/datasource/cli update ncbi",
"index": "run-s index:chebi index:ncbi index:uniprot index:famplex",
"index:famplex": "node -r esm src/server/datasource/cli index famplex",
"index:uniprot": "node -r esm src/server/datasource/cli index uniprot",
"index:chebi": "node -r esm src/server/datasource/cli index chebi",
"index:ncbi": "node -r esm src/server/datasource/cli index ncbi",
"download": "run-s download:chebi download:ncbi download:famplex download:uniprot",
"download:famplex": "node -r esm src/server/datasource/cli download famplex",
"download:uniprot": "node -r esm src/server/datasource/cli download uniprot",
"download:chebi": "node -r esm src/server/datasource/cli download chebi",
"download:ncbi": "node -r esm src/server/datasource/cli download ncbi",
"clear": "node -r esm src/server/datasource/cli clear all",
"clear:famplex": "node -r esm src/server/datasource/cli clear famplex",
"clear:uniprot": "node -r esm src/server/datasource/cli clear uniprot",
"clear:chebi": "node -r esm src/server/datasource/cli clear chebi",
"clear:ncbi": "node -r esm src/server/datasource/cli clear ncbi",
"ci": "run-s lint",
"dump": "node -r esm src/server/datasource/cli dump",
"restore": "node -r esm src/server/datasource/cli restore",
"boot": "run-s clear restore start"
},
"dependencies": {
"benchmark": "^2.1.4",
"binary-split": "^1.0.5",
"body-parser": "^1.15.1",
"cookie-parser": "^1.4.3",
"csvtojson": "^2.0.10",
"date-fns": "^2.4.1",
"deep-equal-in-any-order": "^1.0.13",
"dice-coefficient": "^1.0.3",
"download": "^7.1.0",
"elasticdump": "^6.62.1",
"elasticsearch": "^15.4.1",
"esm": "^3.2.22",
"express": "^4.13.4",
"ftp": "^0.3.10",
"lodash": "^4.17.11",
"morgan": "^1.7.0",
"ndjson": "^2.0.0",
"node-fetch": "^2.6.0",
"pipeline": "^0.1.3",
"saxes": "^3.1.9",
"serve-favicon": "^2.3.0",
"split": "^1.0.1",
"swagger-jsdoc": "^3.2.7",
"swagger-ui-express": "^4.0.2",
"winston": "^2.3.1",
"xmlbuilder": "^12.0.0"
},
"devDependencies": {
"chai": "^4.1.2",
"chai-as-promised": "^7.1.1",
"cross-env": "^5.2.0",
"eslint": "^5.13.0",
"forever": "^0.15.2",
"json2csv": "^4.5.2",
"mocha": "^6.1.4",
"nodemon": "^1.12.1",
"npm-run-all": "^4.1.1",
"xml-js": "^1.6.11"
},
"engines": {
"node": ">=8.0 <=15.14.0"
}
}