From f8f11fc70c21e91ed003a556e4df7df607050609 Mon Sep 17 00:00:00 2001 From: Taylor Salo Date: Mon, 18 Dec 2023 08:45:57 -0500 Subject: [PATCH 1/3] Write out atlases to subfolder. --- aslprep/data/aslprep_bids_config.json | 4 +- ...xpected_outputs_examples_pasl_multipld.txt | 56 +++++++++---------- ...pected_outputs_examples_pcasl_multipld.txt | 56 +++++++++---------- ...ed_outputs_examples_pcasl_singlepld_ge.txt | 56 +++++++++---------- ...tputs_examples_pcasl_singlepld_philips.txt | 56 +++++++++---------- ...tputs_examples_pcasl_singlepld_siemens.txt | 56 +++++++++---------- aslprep/tests/data/expected_outputs_qtab.txt | 56 +++++++++---------- .../tests/data/expected_outputs_test_001.txt | 56 +++++++++---------- .../tests/data/expected_outputs_test_002.txt | 56 +++++++++---------- .../tests/data/expected_outputs_test_003.txt | 56 +++++++++---------- .../data/expected_outputs_test_003_full.txt | 56 +++++++++---------- 11 files changed, 282 insertions(+), 282 deletions(-) diff --git a/aslprep/data/aslprep_bids_config.json b/aslprep/data/aslprep_bids_config.json index 40b1da702..755620537 100755 --- a/aslprep/data/aslprep_bids_config.json +++ b/aslprep/data/aslprep_bids_config.json @@ -25,8 +25,8 @@ ], "default_path_patterns": [ "[desc-{desc}_]{suffix}{extension<.json>|.json}", - "[space-{space}_]atlas-{atlas}[_cohort-{cohort}][_res-{resolution}][_desc-{desc}]_{suffix}{extension<.nii|.nii.gz|.tsv|.json>|.nii.gz}", - "[space-{space}_]atlas-{atlas}[_cohort-{cohort}][_den-{density}][_desc-{desc}]_{suffix}{extension<.dlabel.nii|.tsv|.json>|.dlabel.nii}", + "atlases/atlas-{atlas}/[space-{space}_]atlas-{atlas}[_cohort-{cohort}][_res-{resolution}][_desc-{desc}]_{suffix}{extension<.nii|.nii.gz|.tsv|.json>|.nii.gz}", + "atlases/atlas-{atlas}/[space-{space}_]atlas-{atlas}[_cohort-{cohort}][_den-{density}][_desc-{desc}]_{suffix}{extension<.dlabel.nii|.tsv|.json>|.dlabel.nii}", "sub-{subject}[/ses-{session}]/{datatype|anat}/sub-{subject}[_ses-{session}][_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}]_{suffix}{extension<.nii|.nii.gz|.json>|.nii.gz}", "sub-{subject}[/ses-{session}]/{datatype|anat}/sub-{subject}[_ses-{session}][_acq-{acquisition}][_ce-{ceagent}][_rec-{reconstruction}][_mod-{modality}]_{suffix}{extension<.nii|.nii.gz|.json>|.nii.gz}", "sub-{subject}[/ses-{session}]/{datatype|func}/sub-{subject}[_ses-{session}]_task-{task}[_acq-{acquisition}][_ce-{ceagent}][_dir-{direction}][_rec-{reconstruction}][_run-{run}][_echo-{echo}]_{suffix}{extension<.nii|.nii.gz|.json>|.nii.gz}", diff --git a/aslprep/tests/data/expected_outputs_examples_pasl_multipld.txt b/aslprep/tests/data/expected_outputs_examples_pasl_multipld.txt index a3a273956..f1c8c0bf7 100644 --- a/aslprep/tests/data/expected_outputs_examples_pasl_multipld.txt +++ b/aslprep/tests/data/expected_outputs_examples_pasl_multipld.txt @@ -1,31 +1,31 @@ -atlas-4S1056Parcels_dseg.json -atlas-4S1056Parcels_dseg.tsv -atlas-4S156Parcels_dseg.json -atlas-4S156Parcels_dseg.tsv -atlas-4S256Parcels_dseg.json -atlas-4S256Parcels_dseg.tsv -atlas-4S356Parcels_dseg.json -atlas-4S356Parcels_dseg.tsv -atlas-4S456Parcels_dseg.json -atlas-4S456Parcels_dseg.tsv -atlas-4S556Parcels_dseg.json -atlas-4S556Parcels_dseg.tsv -atlas-4S656Parcels_dseg.json -atlas-4S656Parcels_dseg.tsv -atlas-4S756Parcels_dseg.json -atlas-4S756Parcels_dseg.tsv -atlas-4S856Parcels_dseg.json -atlas-4S856Parcels_dseg.tsv -atlas-4S956Parcels_dseg.json -atlas-4S956Parcels_dseg.tsv -atlas-Glasser_dseg.json -atlas-Glasser_dseg.tsv -atlas-Gordon_dseg.json -atlas-Gordon_dseg.tsv -atlas-HCP_dseg.json -atlas-HCP_dseg.tsv -atlas-Tian_dseg.json -atlas-Tian_dseg.tsv +atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.json +atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.tsv +atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.json +atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.tsv +atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.json +atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.tsv +atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.json +atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.tsv +atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.json +atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.tsv +atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.json +atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.tsv +atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.json +atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.tsv +atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.json +atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.tsv +atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.json +atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.tsv +atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.json +atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.tsv +atlases/atlas-Glasser/atlas-Glasser_dseg.json +atlases/atlas-Glasser/atlas-Glasser_dseg.tsv +atlases/atlas-Gordon/atlas-Gordon_dseg.json +atlases/atlas-Gordon/atlas-Gordon_dseg.tsv +atlases/atlas-HCP/atlas-HCP_dseg.json +atlases/atlas-HCP/atlas-HCP_dseg.tsv +atlases/atlas-Tian/atlas-Tian_dseg.json +atlases/atlas-Tian/atlas-Tian_dseg.tsv desc-qualitycontrol_cbf.json logs logs/CITATION.bib diff --git a/aslprep/tests/data/expected_outputs_examples_pcasl_multipld.txt b/aslprep/tests/data/expected_outputs_examples_pcasl_multipld.txt index 462ddee77..aad44f770 100644 --- a/aslprep/tests/data/expected_outputs_examples_pcasl_multipld.txt +++ b/aslprep/tests/data/expected_outputs_examples_pcasl_multipld.txt @@ -1,31 +1,31 @@ -atlas-4S1056Parcels_dseg.json -atlas-4S1056Parcels_dseg.tsv -atlas-4S156Parcels_dseg.json -atlas-4S156Parcels_dseg.tsv -atlas-4S256Parcels_dseg.json -atlas-4S256Parcels_dseg.tsv -atlas-4S356Parcels_dseg.json -atlas-4S356Parcels_dseg.tsv -atlas-4S456Parcels_dseg.json -atlas-4S456Parcels_dseg.tsv -atlas-4S556Parcels_dseg.json -atlas-4S556Parcels_dseg.tsv -atlas-4S656Parcels_dseg.json -atlas-4S656Parcels_dseg.tsv -atlas-4S756Parcels_dseg.json -atlas-4S756Parcels_dseg.tsv -atlas-4S856Parcels_dseg.json -atlas-4S856Parcels_dseg.tsv -atlas-4S956Parcels_dseg.json -atlas-4S956Parcels_dseg.tsv -atlas-Glasser_dseg.json -atlas-Glasser_dseg.tsv -atlas-Gordon_dseg.json -atlas-Gordon_dseg.tsv -atlas-HCP_dseg.json -atlas-HCP_dseg.tsv -atlas-Tian_dseg.json -atlas-Tian_dseg.tsv +atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.json +atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.tsv +atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.json +atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.tsv +atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.json +atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.tsv +atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.json +atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.tsv +atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.json +atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.tsv +atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.json +atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.tsv +atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.json +atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.tsv +atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.json +atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.tsv +atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.json +atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.tsv +atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.json +atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.tsv +atlases/atlas-Glasser/atlas-Glasser_dseg.json +atlases/atlas-Glasser/atlas-Glasser_dseg.tsv +atlases/atlas-Gordon/atlas-Gordon_dseg.json +atlases/atlas-Gordon/atlas-Gordon_dseg.tsv +atlases/atlas-HCP/atlas-HCP_dseg.json +atlases/atlas-HCP/atlas-HCP_dseg.tsv +atlases/atlas-Tian/atlas-Tian_dseg.json +atlases/atlas-Tian/atlas-Tian_dseg.tsv desc-qualitycontrol_cbf.json logs logs/CITATION.bib diff --git a/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_ge.txt b/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_ge.txt index 9f68dbfbe..d28fb1e76 100644 --- a/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_ge.txt +++ b/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_ge.txt @@ -1,31 +1,31 @@ -atlas-4S1056Parcels_dseg.json -atlas-4S1056Parcels_dseg.tsv -atlas-4S156Parcels_dseg.json -atlas-4S156Parcels_dseg.tsv -atlas-4S256Parcels_dseg.json -atlas-4S256Parcels_dseg.tsv -atlas-4S356Parcels_dseg.json -atlas-4S356Parcels_dseg.tsv -atlas-4S456Parcels_dseg.json -atlas-4S456Parcels_dseg.tsv -atlas-4S556Parcels_dseg.json -atlas-4S556Parcels_dseg.tsv -atlas-4S656Parcels_dseg.json -atlas-4S656Parcels_dseg.tsv -atlas-4S756Parcels_dseg.json -atlas-4S756Parcels_dseg.tsv -atlas-4S856Parcels_dseg.json -atlas-4S856Parcels_dseg.tsv -atlas-4S956Parcels_dseg.json -atlas-4S956Parcels_dseg.tsv -atlas-Glasser_dseg.json -atlas-Glasser_dseg.tsv -atlas-Gordon_dseg.json -atlas-Gordon_dseg.tsv -atlas-HCP_dseg.json -atlas-HCP_dseg.tsv -atlas-Tian_dseg.json -atlas-Tian_dseg.tsv +atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.json +atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.tsv +atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.json +atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.tsv +atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.json +atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.tsv +atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.json +atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.tsv +atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.json +atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.tsv +atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.json +atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.tsv +atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.json +atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.tsv +atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.json +atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.tsv +atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.json +atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.tsv +atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.json +atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.tsv +atlases/atlas-Glasser/atlas-Glasser_dseg.json +atlases/atlas-Glasser/atlas-Glasser_dseg.tsv +atlases/atlas-Gordon/atlas-Gordon_dseg.json +atlases/atlas-Gordon/atlas-Gordon_dseg.tsv +atlases/atlas-HCP/atlas-HCP_dseg.json +atlases/atlas-HCP/atlas-HCP_dseg.tsv +atlases/atlas-Tian/atlas-Tian_dseg.json +atlases/atlas-Tian/atlas-Tian_dseg.tsv desc-qualitycontrol_cbf.json logs logs/CITATION.bib diff --git a/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_philips.txt b/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_philips.txt index 981e6202a..d70cf6bfd 100644 --- a/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_philips.txt +++ b/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_philips.txt @@ -1,31 +1,31 @@ -atlas-4S1056Parcels_dseg.json -atlas-4S1056Parcels_dseg.tsv -atlas-4S156Parcels_dseg.json -atlas-4S156Parcels_dseg.tsv -atlas-4S256Parcels_dseg.json -atlas-4S256Parcels_dseg.tsv -atlas-4S356Parcels_dseg.json -atlas-4S356Parcels_dseg.tsv -atlas-4S456Parcels_dseg.json -atlas-4S456Parcels_dseg.tsv -atlas-4S556Parcels_dseg.json -atlas-4S556Parcels_dseg.tsv -atlas-4S656Parcels_dseg.json -atlas-4S656Parcels_dseg.tsv -atlas-4S756Parcels_dseg.json -atlas-4S756Parcels_dseg.tsv -atlas-4S856Parcels_dseg.json -atlas-4S856Parcels_dseg.tsv -atlas-4S956Parcels_dseg.json -atlas-4S956Parcels_dseg.tsv -atlas-Glasser_dseg.json -atlas-Glasser_dseg.tsv -atlas-Gordon_dseg.json -atlas-Gordon_dseg.tsv -atlas-HCP_dseg.json -atlas-HCP_dseg.tsv -atlas-Tian_dseg.json -atlas-Tian_dseg.tsv +atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.json +atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.tsv +atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.json +atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.tsv +atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.json +atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.tsv +atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.json +atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.tsv +atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.json +atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.tsv +atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.json +atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.tsv +atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.json +atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.tsv +atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.json +atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.tsv +atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.json +atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.tsv +atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.json +atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.tsv +atlases/atlas-Glasser/atlas-Glasser_dseg.json +atlases/atlas-Glasser/atlas-Glasser_dseg.tsv +atlases/atlas-Gordon/atlas-Gordon_dseg.json +atlases/atlas-Gordon/atlas-Gordon_dseg.tsv +atlases/atlas-HCP/atlas-HCP_dseg.json +atlases/atlas-HCP/atlas-HCP_dseg.tsv +atlases/atlas-Tian/atlas-Tian_dseg.json +atlases/atlas-Tian/atlas-Tian_dseg.tsv desc-qualitycontrol_cbf.json logs logs/CITATION.bib diff --git a/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_siemens.txt b/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_siemens.txt index 4d0ff3a52..e4e792ea1 100644 --- a/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_siemens.txt +++ b/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_siemens.txt @@ -1,31 +1,31 @@ -atlas-4S1056Parcels_dseg.json -atlas-4S1056Parcels_dseg.tsv -atlas-4S156Parcels_dseg.json -atlas-4S156Parcels_dseg.tsv -atlas-4S256Parcels_dseg.json -atlas-4S256Parcels_dseg.tsv -atlas-4S356Parcels_dseg.json -atlas-4S356Parcels_dseg.tsv -atlas-4S456Parcels_dseg.json -atlas-4S456Parcels_dseg.tsv -atlas-4S556Parcels_dseg.json -atlas-4S556Parcels_dseg.tsv -atlas-4S656Parcels_dseg.json -atlas-4S656Parcels_dseg.tsv -atlas-4S756Parcels_dseg.json -atlas-4S756Parcels_dseg.tsv -atlas-4S856Parcels_dseg.json -atlas-4S856Parcels_dseg.tsv -atlas-4S956Parcels_dseg.json -atlas-4S956Parcels_dseg.tsv -atlas-Glasser_dseg.json -atlas-Glasser_dseg.tsv -atlas-Gordon_dseg.json -atlas-Gordon_dseg.tsv -atlas-HCP_dseg.json -atlas-HCP_dseg.tsv -atlas-Tian_dseg.json -atlas-Tian_dseg.tsv +atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.json +atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.tsv +atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.json +atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.tsv +atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.json +atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.tsv +atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.json +atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.tsv +atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.json +atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.tsv +atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.json +atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.tsv +atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.json +atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.tsv +atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.json +atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.tsv +atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.json +atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.tsv +atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.json +atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.tsv +atlases/atlas-Glasser/atlas-Glasser_dseg.json +atlases/atlas-Glasser/atlas-Glasser_dseg.tsv +atlases/atlas-Gordon/atlas-Gordon_dseg.json +atlases/atlas-Gordon/atlas-Gordon_dseg.tsv +atlases/atlas-HCP/atlas-HCP_dseg.json +atlases/atlas-HCP/atlas-HCP_dseg.tsv +atlases/atlas-Tian/atlas-Tian_dseg.json +atlases/atlas-Tian/atlas-Tian_dseg.tsv desc-qualitycontrol_cbf.json logs logs/CITATION.bib diff --git a/aslprep/tests/data/expected_outputs_qtab.txt b/aslprep/tests/data/expected_outputs_qtab.txt index abf8932a7..4e341babe 100644 --- a/aslprep/tests/data/expected_outputs_qtab.txt +++ b/aslprep/tests/data/expected_outputs_qtab.txt @@ -1,31 +1,31 @@ -atlas-4S1056Parcels_dseg.json -atlas-4S1056Parcels_dseg.tsv -atlas-4S156Parcels_dseg.json -atlas-4S156Parcels_dseg.tsv -atlas-4S256Parcels_dseg.json -atlas-4S256Parcels_dseg.tsv -atlas-4S356Parcels_dseg.json -atlas-4S356Parcels_dseg.tsv -atlas-4S456Parcels_dseg.json -atlas-4S456Parcels_dseg.tsv -atlas-4S556Parcels_dseg.json -atlas-4S556Parcels_dseg.tsv -atlas-4S656Parcels_dseg.json -atlas-4S656Parcels_dseg.tsv -atlas-4S756Parcels_dseg.json -atlas-4S756Parcels_dseg.tsv -atlas-4S856Parcels_dseg.json -atlas-4S856Parcels_dseg.tsv -atlas-4S956Parcels_dseg.json -atlas-4S956Parcels_dseg.tsv -atlas-Glasser_dseg.json -atlas-Glasser_dseg.tsv -atlas-Gordon_dseg.json -atlas-Gordon_dseg.tsv -atlas-HCP_dseg.json -atlas-HCP_dseg.tsv -atlas-Tian_dseg.json -atlas-Tian_dseg.tsv +atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.json +atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.tsv +atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.json +atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.tsv +atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.json +atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.tsv +atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.json +atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.tsv +atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.json +atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.tsv +atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.json +atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.tsv +atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.json +atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.tsv +atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.json +atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.tsv +atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.json +atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.tsv +atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.json +atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.tsv +atlases/atlas-Glasser/atlas-Glasser_dseg.json +atlases/atlas-Glasser/atlas-Glasser_dseg.tsv +atlases/atlas-Gordon/atlas-Gordon_dseg.json +atlases/atlas-Gordon/atlas-Gordon_dseg.tsv +atlases/atlas-HCP/atlas-HCP_dseg.json +atlases/atlas-HCP/atlas-HCP_dseg.tsv +atlases/atlas-Tian/atlas-Tian_dseg.json +atlases/atlas-Tian/atlas-Tian_dseg.tsv desc-qualitycontrol_cbf.json logs logs/CITATION.bib diff --git a/aslprep/tests/data/expected_outputs_test_001.txt b/aslprep/tests/data/expected_outputs_test_001.txt index 48ed3cb31..3f7d7d256 100644 --- a/aslprep/tests/data/expected_outputs_test_001.txt +++ b/aslprep/tests/data/expected_outputs_test_001.txt @@ -1,31 +1,31 @@ -atlas-4S1056Parcels_dseg.json -atlas-4S1056Parcels_dseg.tsv -atlas-4S156Parcels_dseg.json -atlas-4S156Parcels_dseg.tsv -atlas-4S256Parcels_dseg.json -atlas-4S256Parcels_dseg.tsv -atlas-4S356Parcels_dseg.json -atlas-4S356Parcels_dseg.tsv -atlas-4S456Parcels_dseg.json -atlas-4S456Parcels_dseg.tsv -atlas-4S556Parcels_dseg.json -atlas-4S556Parcels_dseg.tsv -atlas-4S656Parcels_dseg.json -atlas-4S656Parcels_dseg.tsv -atlas-4S756Parcels_dseg.json -atlas-4S756Parcels_dseg.tsv -atlas-4S856Parcels_dseg.json -atlas-4S856Parcels_dseg.tsv -atlas-4S956Parcels_dseg.json -atlas-4S956Parcels_dseg.tsv -atlas-Glasser_dseg.json -atlas-Glasser_dseg.tsv -atlas-Gordon_dseg.json -atlas-Gordon_dseg.tsv -atlas-HCP_dseg.json -atlas-HCP_dseg.tsv -atlas-Tian_dseg.json -atlas-Tian_dseg.tsv +atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.json +atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.tsv +atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.json +atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.tsv +atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.json +atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.tsv +atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.json +atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.tsv +atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.json +atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.tsv +atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.json +atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.tsv +atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.json +atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.tsv +atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.json +atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.tsv +atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.json +atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.tsv +atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.json +atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.tsv +atlases/atlas-Glasser/atlas-Glasser_dseg.json +atlases/atlas-Glasser/atlas-Glasser_dseg.tsv +atlases/atlas-Gordon/atlas-Gordon_dseg.json +atlases/atlas-Gordon/atlas-Gordon_dseg.tsv +atlases/atlas-HCP/atlas-HCP_dseg.json +atlases/atlas-HCP/atlas-HCP_dseg.tsv +atlases/atlas-Tian/atlas-Tian_dseg.json +atlases/atlas-Tian/atlas-Tian_dseg.tsv desc-qualitycontrol_cbf.json logs logs/CITATION.bib diff --git a/aslprep/tests/data/expected_outputs_test_002.txt b/aslprep/tests/data/expected_outputs_test_002.txt index 42451311e..1c9e9d59c 100644 --- a/aslprep/tests/data/expected_outputs_test_002.txt +++ b/aslprep/tests/data/expected_outputs_test_002.txt @@ -1,31 +1,31 @@ -atlas-4S1056Parcels_dseg.json -atlas-4S1056Parcels_dseg.tsv -atlas-4S156Parcels_dseg.json -atlas-4S156Parcels_dseg.tsv -atlas-4S256Parcels_dseg.json -atlas-4S256Parcels_dseg.tsv -atlas-4S356Parcels_dseg.json -atlas-4S356Parcels_dseg.tsv -atlas-4S456Parcels_dseg.json -atlas-4S456Parcels_dseg.tsv -atlas-4S556Parcels_dseg.json -atlas-4S556Parcels_dseg.tsv -atlas-4S656Parcels_dseg.json -atlas-4S656Parcels_dseg.tsv -atlas-4S756Parcels_dseg.json -atlas-4S756Parcels_dseg.tsv -atlas-4S856Parcels_dseg.json -atlas-4S856Parcels_dseg.tsv -atlas-4S956Parcels_dseg.json -atlas-4S956Parcels_dseg.tsv -atlas-Glasser_dseg.json -atlas-Glasser_dseg.tsv -atlas-Gordon_dseg.json -atlas-Gordon_dseg.tsv -atlas-HCP_dseg.json -atlas-HCP_dseg.tsv -atlas-Tian_dseg.json -atlas-Tian_dseg.tsv +atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.json +atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.tsv +atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.json +atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.tsv +atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.json +atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.tsv +atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.json +atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.tsv +atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.json +atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.tsv +atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.json +atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.tsv +atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.json +atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.tsv +atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.json +atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.tsv +atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.json +atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.tsv +atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.json +atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.tsv +atlases/atlas-Glasser/atlas-Glasser_dseg.json +atlases/atlas-Glasser/atlas-Glasser_dseg.tsv +atlases/atlas-Gordon/atlas-Gordon_dseg.json +atlases/atlas-Gordon/atlas-Gordon_dseg.tsv +atlases/atlas-HCP/atlas-HCP_dseg.json +atlases/atlas-HCP/atlas-HCP_dseg.tsv +atlases/atlas-Tian/atlas-Tian_dseg.json +atlases/atlas-Tian/atlas-Tian_dseg.tsv desc-qualitycontrol_cbf.json logs logs/CITATION.bib diff --git a/aslprep/tests/data/expected_outputs_test_003.txt b/aslprep/tests/data/expected_outputs_test_003.txt index 118849be9..3de9e7925 100644 --- a/aslprep/tests/data/expected_outputs_test_003.txt +++ b/aslprep/tests/data/expected_outputs_test_003.txt @@ -1,31 +1,31 @@ -atlas-4S1056Parcels_dseg.json -atlas-4S1056Parcels_dseg.tsv -atlas-4S156Parcels_dseg.json -atlas-4S156Parcels_dseg.tsv -atlas-4S256Parcels_dseg.json -atlas-4S256Parcels_dseg.tsv -atlas-4S356Parcels_dseg.json -atlas-4S356Parcels_dseg.tsv -atlas-4S456Parcels_dseg.json -atlas-4S456Parcels_dseg.tsv -atlas-4S556Parcels_dseg.json -atlas-4S556Parcels_dseg.tsv -atlas-4S656Parcels_dseg.json -atlas-4S656Parcels_dseg.tsv -atlas-4S756Parcels_dseg.json -atlas-4S756Parcels_dseg.tsv -atlas-4S856Parcels_dseg.json -atlas-4S856Parcels_dseg.tsv -atlas-4S956Parcels_dseg.json -atlas-4S956Parcels_dseg.tsv -atlas-Glasser_dseg.json -atlas-Glasser_dseg.tsv -atlas-Gordon_dseg.json -atlas-Gordon_dseg.tsv -atlas-HCP_dseg.json -atlas-HCP_dseg.tsv -atlas-Tian_dseg.json -atlas-Tian_dseg.tsv +atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.json +atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.tsv +atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.json +atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.tsv +atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.json +atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.tsv +atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.json +atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.tsv +atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.json +atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.tsv +atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.json +atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.tsv +atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.json +atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.tsv +atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.json +atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.tsv +atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.json +atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.tsv +atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.json +atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.tsv +atlases/atlas-Glasser/atlas-Glasser_dseg.json +atlases/atlas-Glasser/atlas-Glasser_dseg.tsv +atlases/atlas-Gordon/atlas-Gordon_dseg.json +atlases/atlas-Gordon/atlas-Gordon_dseg.tsv +atlases/atlas-HCP/atlas-HCP_dseg.json +atlases/atlas-HCP/atlas-HCP_dseg.tsv +atlases/atlas-Tian/atlas-Tian_dseg.json +atlases/atlas-Tian/atlas-Tian_dseg.tsv desc-qualitycontrol_cbf.json logs logs/CITATION.bib diff --git a/aslprep/tests/data/expected_outputs_test_003_full.txt b/aslprep/tests/data/expected_outputs_test_003_full.txt index 13acd8e13..b531e19e7 100644 --- a/aslprep/tests/data/expected_outputs_test_003_full.txt +++ b/aslprep/tests/data/expected_outputs_test_003_full.txt @@ -1,31 +1,31 @@ -atlas-4S1056Parcels_dseg.json -atlas-4S1056Parcels_dseg.tsv -atlas-4S156Parcels_dseg.json -atlas-4S156Parcels_dseg.tsv -atlas-4S256Parcels_dseg.json -atlas-4S256Parcels_dseg.tsv -atlas-4S356Parcels_dseg.json -atlas-4S356Parcels_dseg.tsv -atlas-4S456Parcels_dseg.json -atlas-4S456Parcels_dseg.tsv -atlas-4S556Parcels_dseg.json -atlas-4S556Parcels_dseg.tsv -atlas-4S656Parcels_dseg.json -atlas-4S656Parcels_dseg.tsv -atlas-4S756Parcels_dseg.json -atlas-4S756Parcels_dseg.tsv -atlas-4S856Parcels_dseg.json -atlas-4S856Parcels_dseg.tsv -atlas-4S956Parcels_dseg.json -atlas-4S956Parcels_dseg.tsv -atlas-Glasser_dseg.json -atlas-Glasser_dseg.tsv -atlas-Gordon_dseg.json -atlas-Gordon_dseg.tsv -atlas-HCP_dseg.json -atlas-HCP_dseg.tsv -atlas-Tian_dseg.json -atlas-Tian_dseg.tsv +atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.json +atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.tsv +atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.json +atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.tsv +atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.json +atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.tsv +atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.json +atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.tsv +atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.json +atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.tsv +atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.json +atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.tsv +atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.json +atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.tsv +atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.json +atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.tsv +atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.json +atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.tsv +atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.json +atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.tsv +atlases/atlas-Glasser/atlas-Glasser_dseg.json +atlases/atlas-Glasser/atlas-Glasser_dseg.tsv +atlases/atlas-Gordon/atlas-Gordon_dseg.json +atlases/atlas-Gordon/atlas-Gordon_dseg.tsv +atlases/atlas-HCP/atlas-HCP_dseg.json +atlases/atlas-HCP/atlas-HCP_dseg.tsv +atlases/atlas-Tian/atlas-Tian_dseg.json +atlases/atlas-Tian/atlas-Tian_dseg.tsv desc-qualitycontrol_cbf.json logs logs/CITATION.bib From 259ccea68f445a02a7c7d3190536fd4d74d5b353 Mon Sep 17 00:00:00 2001 From: Taylor Salo Date: Mon, 18 Dec 2023 09:38:03 -0500 Subject: [PATCH 2/3] Update expected outputs. --- ...xpected_outputs_examples_pasl_multipld.txt | 71 +++++++++++-------- ...pected_outputs_examples_pcasl_multipld.txt | 71 +++++++++++-------- ...ed_outputs_examples_pcasl_singlepld_ge.txt | 71 +++++++++++-------- ...tputs_examples_pcasl_singlepld_philips.txt | 71 +++++++++++-------- ...tputs_examples_pcasl_singlepld_siemens.txt | 71 +++++++++++-------- aslprep/tests/data/expected_outputs_qtab.txt | 71 +++++++++++-------- .../tests/data/expected_outputs_test_001.txt | 71 +++++++++++-------- .../tests/data/expected_outputs_test_002.txt | 71 +++++++++++-------- .../tests/data/expected_outputs_test_003.txt | 71 +++++++++++-------- .../data/expected_outputs_test_003_full.txt | 71 +++++++++++-------- 10 files changed, 430 insertions(+), 280 deletions(-) diff --git a/aslprep/tests/data/expected_outputs_examples_pasl_multipld.txt b/aslprep/tests/data/expected_outputs_examples_pasl_multipld.txt index f1c8c0bf7..4ede4c3be 100644 --- a/aslprep/tests/data/expected_outputs_examples_pasl_multipld.txt +++ b/aslprep/tests/data/expected_outputs_examples_pasl_multipld.txt @@ -1,65 +1,80 @@ +atlases +atlases/atlas-4S1056Parcels atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.json atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.tsv +atlases/atlas-4S1056Parcels/space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.json +atlases/atlas-4S1056Parcels/space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.nii.gz +atlases/atlas-4S156Parcels atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.json atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.tsv +atlases/atlas-4S156Parcels/space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.json +atlases/atlas-4S156Parcels/space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.nii.gz +atlases/atlas-4S256Parcels atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.json atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.tsv +atlases/atlas-4S256Parcels/space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.json +atlases/atlas-4S256Parcels/space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.nii.gz +atlases/atlas-4S356Parcels atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.json atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.tsv +atlases/atlas-4S356Parcels/space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.json +atlases/atlas-4S356Parcels/space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.nii.gz +atlases/atlas-4S456Parcels atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.json atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.tsv +atlases/atlas-4S456Parcels/space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.json +atlases/atlas-4S456Parcels/space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.nii.gz +atlases/atlas-4S556Parcels atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.json atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.tsv +atlases/atlas-4S556Parcels/space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.json +atlases/atlas-4S556Parcels/space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.nii.gz +atlases/atlas-4S656Parcels atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.json atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.tsv +atlases/atlas-4S656Parcels/space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.json +atlases/atlas-4S656Parcels/space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.nii.gz +atlases/atlas-4S756Parcels atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.json atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.tsv +atlases/atlas-4S756Parcels/space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.json +atlases/atlas-4S756Parcels/space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.nii.gz +atlases/atlas-4S856Parcels atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.json atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.tsv +atlases/atlas-4S856Parcels/space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.json +atlases/atlas-4S856Parcels/space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.nii.gz +atlases/atlas-4S956Parcels atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.json atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.tsv +atlases/atlas-4S956Parcels/space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.json +atlases/atlas-4S956Parcels/space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.nii.gz +atlases/atlas-Glasser atlases/atlas-Glasser/atlas-Glasser_dseg.json atlases/atlas-Glasser/atlas-Glasser_dseg.tsv +atlases/atlas-Glasser/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.json +atlases/atlas-Glasser/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.nii.gz +atlases/atlas-Gordon atlases/atlas-Gordon/atlas-Gordon_dseg.json atlases/atlas-Gordon/atlas-Gordon_dseg.tsv +atlases/atlas-Gordon/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.json +atlases/atlas-Gordon/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.nii.gz +atlases/atlas-HCP atlases/atlas-HCP/atlas-HCP_dseg.json atlases/atlas-HCP/atlas-HCP_dseg.tsv +atlases/atlas-HCP/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.json +atlases/atlas-HCP/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.nii.gz +atlases/atlas-Tian atlases/atlas-Tian/atlas-Tian_dseg.json atlases/atlas-Tian/atlas-Tian_dseg.tsv +atlases/atlas-Tian/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.json +atlases/atlas-Tian/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.nii.gz desc-qualitycontrol_cbf.json logs logs/CITATION.bib logs/CITATION.html logs/CITATION.md logs/CITATION.tex -space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.json -space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.json -space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.json -space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.nii.gz -space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.json -space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.nii.gz sub-01 sub-01.html sub-01/ses-1 diff --git a/aslprep/tests/data/expected_outputs_examples_pcasl_multipld.txt b/aslprep/tests/data/expected_outputs_examples_pcasl_multipld.txt index aad44f770..b76e98ae7 100644 --- a/aslprep/tests/data/expected_outputs_examples_pcasl_multipld.txt +++ b/aslprep/tests/data/expected_outputs_examples_pcasl_multipld.txt @@ -1,65 +1,80 @@ +atlases +atlases/atlas-4S1056Parcels atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.json atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.tsv +atlases/atlas-4S1056Parcels/space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.json +atlases/atlas-4S1056Parcels/space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.nii.gz +atlases/atlas-4S156Parcels atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.json atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.tsv +atlases/atlas-4S156Parcels/space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.json +atlases/atlas-4S156Parcels/space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.nii.gz +atlases/atlas-4S256Parcels atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.json atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.tsv +atlases/atlas-4S256Parcels/space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.json +atlases/atlas-4S256Parcels/space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.nii.gz +atlases/atlas-4S356Parcels atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.json atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.tsv +atlases/atlas-4S356Parcels/space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.json +atlases/atlas-4S356Parcels/space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.nii.gz +atlases/atlas-4S456Parcels atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.json atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.tsv +atlases/atlas-4S456Parcels/space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.json +atlases/atlas-4S456Parcels/space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.nii.gz +atlases/atlas-4S556Parcels atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.json atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.tsv +atlases/atlas-4S556Parcels/space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.json +atlases/atlas-4S556Parcels/space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.nii.gz +atlases/atlas-4S656Parcels atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.json atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.tsv +atlases/atlas-4S656Parcels/space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.json +atlases/atlas-4S656Parcels/space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.nii.gz +atlases/atlas-4S756Parcels atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.json atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.tsv +atlases/atlas-4S756Parcels/space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.json +atlases/atlas-4S756Parcels/space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.nii.gz +atlases/atlas-4S856Parcels atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.json atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.tsv +atlases/atlas-4S856Parcels/space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.json +atlases/atlas-4S856Parcels/space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.nii.gz +atlases/atlas-4S956Parcels atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.json atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.tsv +atlases/atlas-4S956Parcels/space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.json +atlases/atlas-4S956Parcels/space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.nii.gz +atlases/atlas-Glasser atlases/atlas-Glasser/atlas-Glasser_dseg.json atlases/atlas-Glasser/atlas-Glasser_dseg.tsv +atlases/atlas-Glasser/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.json +atlases/atlas-Glasser/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.nii.gz +atlases/atlas-Gordon atlases/atlas-Gordon/atlas-Gordon_dseg.json atlases/atlas-Gordon/atlas-Gordon_dseg.tsv +atlases/atlas-Gordon/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.json +atlases/atlas-Gordon/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.nii.gz +atlases/atlas-HCP atlases/atlas-HCP/atlas-HCP_dseg.json atlases/atlas-HCP/atlas-HCP_dseg.tsv +atlases/atlas-HCP/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.json +atlases/atlas-HCP/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.nii.gz +atlases/atlas-Tian atlases/atlas-Tian/atlas-Tian_dseg.json atlases/atlas-Tian/atlas-Tian_dseg.tsv +atlases/atlas-Tian/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.json +atlases/atlas-Tian/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.nii.gz desc-qualitycontrol_cbf.json logs logs/CITATION.bib logs/CITATION.html logs/CITATION.md logs/CITATION.tex -space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.json -space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.json -space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.json -space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.nii.gz -space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.json -space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.nii.gz sub-01 sub-01.html sub-01/perf diff --git a/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_ge.txt b/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_ge.txt index d28fb1e76..785815a81 100644 --- a/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_ge.txt +++ b/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_ge.txt @@ -1,65 +1,80 @@ +atlases +atlases/atlas-4S1056Parcels atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.json atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.tsv +atlases/atlas-4S1056Parcels/space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.json +atlases/atlas-4S1056Parcels/space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.nii.gz +atlases/atlas-4S156Parcels atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.json atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.tsv +atlases/atlas-4S156Parcels/space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.json +atlases/atlas-4S156Parcels/space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.nii.gz +atlases/atlas-4S256Parcels atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.json atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.tsv +atlases/atlas-4S256Parcels/space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.json +atlases/atlas-4S256Parcels/space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.nii.gz +atlases/atlas-4S356Parcels atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.json atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.tsv +atlases/atlas-4S356Parcels/space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.json +atlases/atlas-4S356Parcels/space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.nii.gz +atlases/atlas-4S456Parcels atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.json atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.tsv +atlases/atlas-4S456Parcels/space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.json +atlases/atlas-4S456Parcels/space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.nii.gz +atlases/atlas-4S556Parcels atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.json atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.tsv +atlases/atlas-4S556Parcels/space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.json +atlases/atlas-4S556Parcels/space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.nii.gz +atlases/atlas-4S656Parcels atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.json atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.tsv +atlases/atlas-4S656Parcels/space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.json +atlases/atlas-4S656Parcels/space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.nii.gz +atlases/atlas-4S756Parcels atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.json atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.tsv +atlases/atlas-4S756Parcels/space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.json +atlases/atlas-4S756Parcels/space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.nii.gz +atlases/atlas-4S856Parcels atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.json atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.tsv +atlases/atlas-4S856Parcels/space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.json +atlases/atlas-4S856Parcels/space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.nii.gz +atlases/atlas-4S956Parcels atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.json atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.tsv +atlases/atlas-4S956Parcels/space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.json +atlases/atlas-4S956Parcels/space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.nii.gz +atlases/atlas-Glasser atlases/atlas-Glasser/atlas-Glasser_dseg.json atlases/atlas-Glasser/atlas-Glasser_dseg.tsv +atlases/atlas-Glasser/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.json +atlases/atlas-Glasser/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.nii.gz +atlases/atlas-Gordon atlases/atlas-Gordon/atlas-Gordon_dseg.json atlases/atlas-Gordon/atlas-Gordon_dseg.tsv +atlases/atlas-Gordon/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.json +atlases/atlas-Gordon/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.nii.gz +atlases/atlas-HCP atlases/atlas-HCP/atlas-HCP_dseg.json atlases/atlas-HCP/atlas-HCP_dseg.tsv +atlases/atlas-HCP/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.json +atlases/atlas-HCP/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.nii.gz +atlases/atlas-Tian atlases/atlas-Tian/atlas-Tian_dseg.json atlases/atlas-Tian/atlas-Tian_dseg.tsv +atlases/atlas-Tian/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.json +atlases/atlas-Tian/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.nii.gz desc-qualitycontrol_cbf.json logs logs/CITATION.bib logs/CITATION.html logs/CITATION.md logs/CITATION.tex -space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.json -space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.json -space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.json -space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.nii.gz -space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.json -space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.nii.gz sub-01 sub-01.html sub-01/ses-ge3d diff --git a/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_philips.txt b/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_philips.txt index d70cf6bfd..7d61ec8c4 100644 --- a/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_philips.txt +++ b/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_philips.txt @@ -1,65 +1,80 @@ +atlases +atlases/atlas-4S1056Parcels atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.json atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.tsv +atlases/atlas-4S1056Parcels/space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.json +atlases/atlas-4S1056Parcels/space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.nii.gz +atlases/atlas-4S156Parcels atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.json atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.tsv +atlases/atlas-4S156Parcels/space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.json +atlases/atlas-4S156Parcels/space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.nii.gz +atlases/atlas-4S256Parcels atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.json atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.tsv +atlases/atlas-4S256Parcels/space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.json +atlases/atlas-4S256Parcels/space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.nii.gz +atlases/atlas-4S356Parcels atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.json atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.tsv +atlases/atlas-4S356Parcels/space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.json +atlases/atlas-4S356Parcels/space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.nii.gz +atlases/atlas-4S456Parcels atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.json atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.tsv +atlases/atlas-4S456Parcels/space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.json +atlases/atlas-4S456Parcels/space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.nii.gz +atlases/atlas-4S556Parcels atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.json atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.tsv +atlases/atlas-4S556Parcels/space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.json +atlases/atlas-4S556Parcels/space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.nii.gz +atlases/atlas-4S656Parcels atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.json atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.tsv +atlases/atlas-4S656Parcels/space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.json +atlases/atlas-4S656Parcels/space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.nii.gz +atlases/atlas-4S756Parcels atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.json atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.tsv +atlases/atlas-4S756Parcels/space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.json +atlases/atlas-4S756Parcels/space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.nii.gz +atlases/atlas-4S856Parcels atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.json atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.tsv +atlases/atlas-4S856Parcels/space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.json +atlases/atlas-4S856Parcels/space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.nii.gz +atlases/atlas-4S956Parcels atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.json atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.tsv +atlases/atlas-4S956Parcels/space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.json +atlases/atlas-4S956Parcels/space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.nii.gz +atlases/atlas-Glasser atlases/atlas-Glasser/atlas-Glasser_dseg.json atlases/atlas-Glasser/atlas-Glasser_dseg.tsv +atlases/atlas-Glasser/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.json +atlases/atlas-Glasser/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.nii.gz +atlases/atlas-Gordon atlases/atlas-Gordon/atlas-Gordon_dseg.json atlases/atlas-Gordon/atlas-Gordon_dseg.tsv +atlases/atlas-Gordon/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.json +atlases/atlas-Gordon/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.nii.gz +atlases/atlas-HCP atlases/atlas-HCP/atlas-HCP_dseg.json atlases/atlas-HCP/atlas-HCP_dseg.tsv +atlases/atlas-HCP/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.json +atlases/atlas-HCP/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.nii.gz +atlases/atlas-Tian atlases/atlas-Tian/atlas-Tian_dseg.json atlases/atlas-Tian/atlas-Tian_dseg.tsv +atlases/atlas-Tian/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.json +atlases/atlas-Tian/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.nii.gz desc-qualitycontrol_cbf.json logs logs/CITATION.bib logs/CITATION.html logs/CITATION.md logs/CITATION.tex -space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.json -space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.json -space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.json -space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.nii.gz -space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.json -space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.nii.gz sub-01 sub-01.html sub-01/anat diff --git a/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_siemens.txt b/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_siemens.txt index e4e792ea1..317656fdc 100644 --- a/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_siemens.txt +++ b/aslprep/tests/data/expected_outputs_examples_pcasl_singlepld_siemens.txt @@ -1,65 +1,80 @@ +atlases +atlases/atlas-4S1056Parcels atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.json atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.tsv +atlases/atlas-4S1056Parcels/space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.json +atlases/atlas-4S1056Parcels/space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.nii.gz +atlases/atlas-4S156Parcels atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.json atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.tsv +atlases/atlas-4S156Parcels/space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.json +atlases/atlas-4S156Parcels/space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.nii.gz +atlases/atlas-4S256Parcels atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.json atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.tsv +atlases/atlas-4S256Parcels/space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.json +atlases/atlas-4S256Parcels/space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.nii.gz +atlases/atlas-4S356Parcels atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.json atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.tsv +atlases/atlas-4S356Parcels/space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.json +atlases/atlas-4S356Parcels/space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.nii.gz +atlases/atlas-4S456Parcels atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.json atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.tsv +atlases/atlas-4S456Parcels/space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.json +atlases/atlas-4S456Parcels/space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.nii.gz +atlases/atlas-4S556Parcels atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.json atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.tsv +atlases/atlas-4S556Parcels/space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.json +atlases/atlas-4S556Parcels/space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.nii.gz +atlases/atlas-4S656Parcels atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.json atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.tsv +atlases/atlas-4S656Parcels/space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.json +atlases/atlas-4S656Parcels/space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.nii.gz +atlases/atlas-4S756Parcels atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.json atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.tsv +atlases/atlas-4S756Parcels/space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.json +atlases/atlas-4S756Parcels/space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.nii.gz +atlases/atlas-4S856Parcels atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.json atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.tsv +atlases/atlas-4S856Parcels/space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.json +atlases/atlas-4S856Parcels/space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.nii.gz +atlases/atlas-4S956Parcels atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.json atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.tsv +atlases/atlas-4S956Parcels/space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.json +atlases/atlas-4S956Parcels/space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.nii.gz +atlases/atlas-Glasser atlases/atlas-Glasser/atlas-Glasser_dseg.json atlases/atlas-Glasser/atlas-Glasser_dseg.tsv +atlases/atlas-Glasser/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.json +atlases/atlas-Glasser/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.nii.gz +atlases/atlas-Gordon atlases/atlas-Gordon/atlas-Gordon_dseg.json atlases/atlas-Gordon/atlas-Gordon_dseg.tsv +atlases/atlas-Gordon/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.json +atlases/atlas-Gordon/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.nii.gz +atlases/atlas-HCP atlases/atlas-HCP/atlas-HCP_dseg.json atlases/atlas-HCP/atlas-HCP_dseg.tsv +atlases/atlas-HCP/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.json +atlases/atlas-HCP/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.nii.gz +atlases/atlas-Tian atlases/atlas-Tian/atlas-Tian_dseg.json atlases/atlas-Tian/atlas-Tian_dseg.tsv +atlases/atlas-Tian/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.json +atlases/atlas-Tian/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.nii.gz desc-qualitycontrol_cbf.json logs logs/CITATION.bib logs/CITATION.html logs/CITATION.md logs/CITATION.tex -space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.json -space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.json -space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.json -space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.nii.gz -space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.json -space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.nii.gz sub-01 sub-01.html sub-01/anat diff --git a/aslprep/tests/data/expected_outputs_qtab.txt b/aslprep/tests/data/expected_outputs_qtab.txt index 4e341babe..3896a7b05 100644 --- a/aslprep/tests/data/expected_outputs_qtab.txt +++ b/aslprep/tests/data/expected_outputs_qtab.txt @@ -1,65 +1,80 @@ +atlases +atlases/atlas-4S1056Parcels atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.json atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.tsv +atlases/atlas-4S1056Parcels/space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.json +atlases/atlas-4S1056Parcels/space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.nii.gz +atlases/atlas-4S156Parcels atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.json atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.tsv +atlases/atlas-4S156Parcels/space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.json +atlases/atlas-4S156Parcels/space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.nii.gz +atlases/atlas-4S256Parcels atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.json atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.tsv +atlases/atlas-4S256Parcels/space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.json +atlases/atlas-4S256Parcels/space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.nii.gz +atlases/atlas-4S356Parcels atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.json atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.tsv +atlases/atlas-4S356Parcels/space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.json +atlases/atlas-4S356Parcels/space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.nii.gz +atlases/atlas-4S456Parcels atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.json atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.tsv +atlases/atlas-4S456Parcels/space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.json +atlases/atlas-4S456Parcels/space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.nii.gz +atlases/atlas-4S556Parcels atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.json atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.tsv +atlases/atlas-4S556Parcels/space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.json +atlases/atlas-4S556Parcels/space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.nii.gz +atlases/atlas-4S656Parcels atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.json atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.tsv +atlases/atlas-4S656Parcels/space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.json +atlases/atlas-4S656Parcels/space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.nii.gz +atlases/atlas-4S756Parcels atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.json atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.tsv +atlases/atlas-4S756Parcels/space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.json +atlases/atlas-4S756Parcels/space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.nii.gz +atlases/atlas-4S856Parcels atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.json atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.tsv +atlases/atlas-4S856Parcels/space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.json +atlases/atlas-4S856Parcels/space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.nii.gz +atlases/atlas-4S956Parcels atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.json atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.tsv +atlases/atlas-4S956Parcels/space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.json +atlases/atlas-4S956Parcels/space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.nii.gz +atlases/atlas-Glasser atlases/atlas-Glasser/atlas-Glasser_dseg.json atlases/atlas-Glasser/atlas-Glasser_dseg.tsv +atlases/atlas-Glasser/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.json +atlases/atlas-Glasser/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.nii.gz +atlases/atlas-Gordon atlases/atlas-Gordon/atlas-Gordon_dseg.json atlases/atlas-Gordon/atlas-Gordon_dseg.tsv +atlases/atlas-Gordon/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.json +atlases/atlas-Gordon/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.nii.gz +atlases/atlas-HCP atlases/atlas-HCP/atlas-HCP_dseg.json atlases/atlas-HCP/atlas-HCP_dseg.tsv +atlases/atlas-HCP/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.json +atlases/atlas-HCP/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.nii.gz +atlases/atlas-Tian atlases/atlas-Tian/atlas-Tian_dseg.json atlases/atlas-Tian/atlas-Tian_dseg.tsv +atlases/atlas-Tian/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.json +atlases/atlas-Tian/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.nii.gz desc-qualitycontrol_cbf.json logs logs/CITATION.bib logs/CITATION.html logs/CITATION.md logs/CITATION.tex -space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.json -space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.json -space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.json -space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.nii.gz -space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.json -space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.nii.gz sub-01 sub-01.html sub-01/anat diff --git a/aslprep/tests/data/expected_outputs_test_001.txt b/aslprep/tests/data/expected_outputs_test_001.txt index 3f7d7d256..1450b38b8 100644 --- a/aslprep/tests/data/expected_outputs_test_001.txt +++ b/aslprep/tests/data/expected_outputs_test_001.txt @@ -1,65 +1,80 @@ +atlases +atlases/atlas-4S1056Parcels atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.json atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.tsv +atlases/atlas-4S1056Parcels/space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.json +atlases/atlas-4S1056Parcels/space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.nii.gz +atlases/atlas-4S156Parcels atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.json atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.tsv +atlases/atlas-4S156Parcels/space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.json +atlases/atlas-4S156Parcels/space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.nii.gz +atlases/atlas-4S256Parcels atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.json atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.tsv +atlases/atlas-4S256Parcels/space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.json +atlases/atlas-4S256Parcels/space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.nii.gz +atlases/atlas-4S356Parcels atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.json atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.tsv +atlases/atlas-4S356Parcels/space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.json +atlases/atlas-4S356Parcels/space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.nii.gz +atlases/atlas-4S456Parcels atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.json atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.tsv +atlases/atlas-4S456Parcels/space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.json +atlases/atlas-4S456Parcels/space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.nii.gz +atlases/atlas-4S556Parcels atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.json atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.tsv +atlases/atlas-4S556Parcels/space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.json +atlases/atlas-4S556Parcels/space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.nii.gz +atlases/atlas-4S656Parcels atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.json atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.tsv +atlases/atlas-4S656Parcels/space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.json +atlases/atlas-4S656Parcels/space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.nii.gz +atlases/atlas-4S756Parcels atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.json atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.tsv +atlases/atlas-4S756Parcels/space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.json +atlases/atlas-4S756Parcels/space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.nii.gz +atlases/atlas-4S856Parcels atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.json atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.tsv +atlases/atlas-4S856Parcels/space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.json +atlases/atlas-4S856Parcels/space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.nii.gz +atlases/atlas-4S956Parcels atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.json atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.tsv +atlases/atlas-4S956Parcels/space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.json +atlases/atlas-4S956Parcels/space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.nii.gz +atlases/atlas-Glasser atlases/atlas-Glasser/atlas-Glasser_dseg.json atlases/atlas-Glasser/atlas-Glasser_dseg.tsv +atlases/atlas-Glasser/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.json +atlases/atlas-Glasser/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.nii.gz +atlases/atlas-Gordon atlases/atlas-Gordon/atlas-Gordon_dseg.json atlases/atlas-Gordon/atlas-Gordon_dseg.tsv +atlases/atlas-Gordon/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.json +atlases/atlas-Gordon/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.nii.gz +atlases/atlas-HCP atlases/atlas-HCP/atlas-HCP_dseg.json atlases/atlas-HCP/atlas-HCP_dseg.tsv +atlases/atlas-HCP/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.json +atlases/atlas-HCP/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.nii.gz +atlases/atlas-Tian atlases/atlas-Tian/atlas-Tian_dseg.json atlases/atlas-Tian/atlas-Tian_dseg.tsv +atlases/atlas-Tian/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.json +atlases/atlas-Tian/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.nii.gz desc-qualitycontrol_cbf.json logs logs/CITATION.bib logs/CITATION.html logs/CITATION.md logs/CITATION.tex -space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.json -space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.json -space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.json -space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.nii.gz -space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.json -space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.nii.gz sub-01 sub-01.html sub-01/anat diff --git a/aslprep/tests/data/expected_outputs_test_002.txt b/aslprep/tests/data/expected_outputs_test_002.txt index 1c9e9d59c..a034a2cce 100644 --- a/aslprep/tests/data/expected_outputs_test_002.txt +++ b/aslprep/tests/data/expected_outputs_test_002.txt @@ -1,65 +1,80 @@ +atlases +atlases/atlas-4S1056Parcels atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.json atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.tsv +atlases/atlas-4S1056Parcels/space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.json +atlases/atlas-4S1056Parcels/space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.nii.gz +atlases/atlas-4S156Parcels atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.json atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.tsv +atlases/atlas-4S156Parcels/space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.json +atlases/atlas-4S156Parcels/space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.nii.gz +atlases/atlas-4S256Parcels atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.json atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.tsv +atlases/atlas-4S256Parcels/space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.json +atlases/atlas-4S256Parcels/space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.nii.gz +atlases/atlas-4S356Parcels atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.json atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.tsv +atlases/atlas-4S356Parcels/space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.json +atlases/atlas-4S356Parcels/space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.nii.gz +atlases/atlas-4S456Parcels atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.json atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.tsv +atlases/atlas-4S456Parcels/space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.json +atlases/atlas-4S456Parcels/space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.nii.gz +atlases/atlas-4S556Parcels atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.json atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.tsv +atlases/atlas-4S556Parcels/space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.json +atlases/atlas-4S556Parcels/space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.nii.gz +atlases/atlas-4S656Parcels atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.json atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.tsv +atlases/atlas-4S656Parcels/space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.json +atlases/atlas-4S656Parcels/space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.nii.gz +atlases/atlas-4S756Parcels atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.json atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.tsv +atlases/atlas-4S756Parcels/space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.json +atlases/atlas-4S756Parcels/space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.nii.gz +atlases/atlas-4S856Parcels atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.json atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.tsv +atlases/atlas-4S856Parcels/space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.json +atlases/atlas-4S856Parcels/space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.nii.gz +atlases/atlas-4S956Parcels atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.json atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.tsv +atlases/atlas-4S956Parcels/space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.json +atlases/atlas-4S956Parcels/space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.nii.gz +atlases/atlas-Glasser atlases/atlas-Glasser/atlas-Glasser_dseg.json atlases/atlas-Glasser/atlas-Glasser_dseg.tsv +atlases/atlas-Glasser/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.json +atlases/atlas-Glasser/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.nii.gz +atlases/atlas-Gordon atlases/atlas-Gordon/atlas-Gordon_dseg.json atlases/atlas-Gordon/atlas-Gordon_dseg.tsv +atlases/atlas-Gordon/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.json +atlases/atlas-Gordon/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.nii.gz +atlases/atlas-HCP atlases/atlas-HCP/atlas-HCP_dseg.json atlases/atlas-HCP/atlas-HCP_dseg.tsv +atlases/atlas-HCP/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.json +atlases/atlas-HCP/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.nii.gz +atlases/atlas-Tian atlases/atlas-Tian/atlas-Tian_dseg.json atlases/atlas-Tian/atlas-Tian_dseg.tsv +atlases/atlas-Tian/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.json +atlases/atlas-Tian/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.nii.gz desc-qualitycontrol_cbf.json logs logs/CITATION.bib logs/CITATION.html logs/CITATION.md logs/CITATION.tex -space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.json -space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.json -space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.json -space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.nii.gz -space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.json -space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.nii.gz sub-01 sub-01.html sub-01/anat diff --git a/aslprep/tests/data/expected_outputs_test_003.txt b/aslprep/tests/data/expected_outputs_test_003.txt index 3de9e7925..9e7446884 100644 --- a/aslprep/tests/data/expected_outputs_test_003.txt +++ b/aslprep/tests/data/expected_outputs_test_003.txt @@ -1,65 +1,80 @@ +atlases +atlases/atlas-4S1056Parcels atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.json atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.tsv +atlases/atlas-4S1056Parcels/space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.json +atlases/atlas-4S1056Parcels/space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.nii.gz +atlases/atlas-4S156Parcels atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.json atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.tsv +atlases/atlas-4S156Parcels/space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.json +atlases/atlas-4S156Parcels/space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.nii.gz +atlases/atlas-4S256Parcels atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.json atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.tsv +atlases/atlas-4S256Parcels/space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.json +atlases/atlas-4S256Parcels/space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.nii.gz +atlases/atlas-4S356Parcels atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.json atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.tsv +atlases/atlas-4S356Parcels/space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.json +atlases/atlas-4S356Parcels/space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.nii.gz +atlases/atlas-4S456Parcels atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.json atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.tsv +atlases/atlas-4S456Parcels/space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.json +atlases/atlas-4S456Parcels/space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.nii.gz +atlases/atlas-4S556Parcels atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.json atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.tsv +atlases/atlas-4S556Parcels/space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.json +atlases/atlas-4S556Parcels/space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.nii.gz +atlases/atlas-4S656Parcels atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.json atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.tsv +atlases/atlas-4S656Parcels/space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.json +atlases/atlas-4S656Parcels/space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.nii.gz +atlases/atlas-4S756Parcels atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.json atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.tsv +atlases/atlas-4S756Parcels/space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.json +atlases/atlas-4S756Parcels/space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.nii.gz +atlases/atlas-4S856Parcels atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.json atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.tsv +atlases/atlas-4S856Parcels/space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.json +atlases/atlas-4S856Parcels/space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.nii.gz +atlases/atlas-4S956Parcels atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.json atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.tsv +atlases/atlas-4S956Parcels/space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.json +atlases/atlas-4S956Parcels/space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.nii.gz +atlases/atlas-Glasser atlases/atlas-Glasser/atlas-Glasser_dseg.json atlases/atlas-Glasser/atlas-Glasser_dseg.tsv +atlases/atlas-Glasser/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.json +atlases/atlas-Glasser/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.nii.gz +atlases/atlas-Gordon atlases/atlas-Gordon/atlas-Gordon_dseg.json atlases/atlas-Gordon/atlas-Gordon_dseg.tsv +atlases/atlas-Gordon/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.json +atlases/atlas-Gordon/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.nii.gz +atlases/atlas-HCP atlases/atlas-HCP/atlas-HCP_dseg.json atlases/atlas-HCP/atlas-HCP_dseg.tsv +atlases/atlas-HCP/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.json +atlases/atlas-HCP/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.nii.gz +atlases/atlas-Tian atlases/atlas-Tian/atlas-Tian_dseg.json atlases/atlas-Tian/atlas-Tian_dseg.tsv +atlases/atlas-Tian/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.json +atlases/atlas-Tian/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.nii.gz desc-qualitycontrol_cbf.json logs logs/CITATION.bib logs/CITATION.html logs/CITATION.md logs/CITATION.tex -space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.json -space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.json -space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.json -space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.nii.gz -space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.json -space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.nii.gz sub-01 sub-01.html sub-01/ses-1 diff --git a/aslprep/tests/data/expected_outputs_test_003_full.txt b/aslprep/tests/data/expected_outputs_test_003_full.txt index b531e19e7..63f020713 100644 --- a/aslprep/tests/data/expected_outputs_test_003_full.txt +++ b/aslprep/tests/data/expected_outputs_test_003_full.txt @@ -1,65 +1,80 @@ +atlases +atlases/atlas-4S1056Parcels atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.json atlases/atlas-4S1056Parcels/atlas-4S1056Parcels_dseg.tsv +atlases/atlas-4S1056Parcels/space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.json +atlases/atlas-4S1056Parcels/space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.nii.gz +atlases/atlas-4S156Parcels atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.json atlases/atlas-4S156Parcels/atlas-4S156Parcels_dseg.tsv +atlases/atlas-4S156Parcels/space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.json +atlases/atlas-4S156Parcels/space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.nii.gz +atlases/atlas-4S256Parcels atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.json atlases/atlas-4S256Parcels/atlas-4S256Parcels_dseg.tsv +atlases/atlas-4S256Parcels/space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.json +atlases/atlas-4S256Parcels/space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.nii.gz +atlases/atlas-4S356Parcels atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.json atlases/atlas-4S356Parcels/atlas-4S356Parcels_dseg.tsv +atlases/atlas-4S356Parcels/space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.json +atlases/atlas-4S356Parcels/space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.nii.gz +atlases/atlas-4S456Parcels atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.json atlases/atlas-4S456Parcels/atlas-4S456Parcels_dseg.tsv +atlases/atlas-4S456Parcels/space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.json +atlases/atlas-4S456Parcels/space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.nii.gz +atlases/atlas-4S556Parcels atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.json atlases/atlas-4S556Parcels/atlas-4S556Parcels_dseg.tsv +atlases/atlas-4S556Parcels/space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.json +atlases/atlas-4S556Parcels/space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.nii.gz +atlases/atlas-4S656Parcels atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.json atlases/atlas-4S656Parcels/atlas-4S656Parcels_dseg.tsv +atlases/atlas-4S656Parcels/space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.json +atlases/atlas-4S656Parcels/space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.nii.gz +atlases/atlas-4S756Parcels atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.json atlases/atlas-4S756Parcels/atlas-4S756Parcels_dseg.tsv +atlases/atlas-4S756Parcels/space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.json +atlases/atlas-4S756Parcels/space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.nii.gz +atlases/atlas-4S856Parcels atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.json atlases/atlas-4S856Parcels/atlas-4S856Parcels_dseg.tsv +atlases/atlas-4S856Parcels/space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.json +atlases/atlas-4S856Parcels/space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.nii.gz +atlases/atlas-4S956Parcels atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.json atlases/atlas-4S956Parcels/atlas-4S956Parcels_dseg.tsv +atlases/atlas-4S956Parcels/space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.json +atlases/atlas-4S956Parcels/space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.nii.gz +atlases/atlas-Glasser atlases/atlas-Glasser/atlas-Glasser_dseg.json atlases/atlas-Glasser/atlas-Glasser_dseg.tsv +atlases/atlas-Glasser/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.json +atlases/atlas-Glasser/space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.nii.gz +atlases/atlas-Gordon atlases/atlas-Gordon/atlas-Gordon_dseg.json atlases/atlas-Gordon/atlas-Gordon_dseg.tsv +atlases/atlas-Gordon/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.json +atlases/atlas-Gordon/space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.nii.gz +atlases/atlas-HCP atlases/atlas-HCP/atlas-HCP_dseg.json atlases/atlas-HCP/atlas-HCP_dseg.tsv +atlases/atlas-HCP/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.json +atlases/atlas-HCP/space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.nii.gz +atlases/atlas-Tian atlases/atlas-Tian/atlas-Tian_dseg.json atlases/atlas-Tian/atlas-Tian_dseg.tsv +atlases/atlas-Tian/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.json +atlases/atlas-Tian/space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.nii.gz desc-qualitycontrol_cbf.json logs logs/CITATION.bib logs/CITATION.html logs/CITATION.md logs/CITATION.tex -space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S1056Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S156Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S256Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S356Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S456Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S556Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S656Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S756Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S856Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.json -space-MNI152NLin6Asym_atlas-4S956Parcels_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.json -space-MNI152NLin6Asym_atlas-Glasser_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.json -space-MNI152NLin6Asym_atlas-Gordon_res-01_dseg.nii.gz -space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.json -space-MNI152NLin6Asym_atlas-HCP_res-02_dseg.nii.gz -space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.json -space-MNI152NLin6Asym_atlas-Tian_res-02_dseg.nii.gz sub-01 sub-01.html sub-01/anat From dc19115be473a5a61140860f0960eca33617494d Mon Sep 17 00:00:00 2001 From: Taylor Salo Date: Thu, 4 Jan 2024 13:28:16 -0500 Subject: [PATCH 3/3] Document the change. --- docs/outputs.rst | 9 ++++++--- 1 file changed, 6 insertions(+), 3 deletions(-) diff --git a/docs/outputs.rst b/docs/outputs.rst index 749fd598a..3b67cb767 100644 --- a/docs/outputs.rst +++ b/docs/outputs.rst @@ -35,6 +35,7 @@ The outputs will be a `BIDS Derivatives`_ dataset of the form:: / logs/ + atlases/ sub-