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datasets.schema.yaml
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####
#### Use kwalify and this schema to validate the config files.
#### Example:
#### kwalify -E -m ./metadata/datasets.schema.yaml
#### kwalify -E -f ./metadata/datasets.schema.yaml ./metadata/FOO.yaml
####
#### To convert to JSON once passed:
#### ./node_modules/yamljs/bin/yaml2json -p ./metadata/datasets.yaml > ./metadata/datasets.json
####
type: map
mapping:
"id":
type: str
required: true
unique: true
"label":
type: str
required: true
unique: true
"description":
type: str
required: true
unique: true
"project_name":
type: str
required: false
unique: false
"contact_email":
type: str
required: false
unique: false
"project_url":
type: str
required: false
unique: false
"funding_source":
type: str
required: false
unique: false
"email_report":
type: str
required: false
unique: false
"filter_out":
type: map
required: false
mapping:
"evidence":
type: seq
required: false
sequence:
- type: str
pattern: /ECO:[0-9]{7}/
"evidence_reference":
type: seq
required: false
sequence:
- type: map
mapping:
"evidence":
type: str
required: true
pattern: /ECO:[0-9]{7}/
"reference":
type: str
required: true
"annotation_properties":
type: seq
required: false
sequence:
- type: str
"datasets":
type: seq
required: true
sequence:
- type: map
mapping:
"id":
type: str
required: true
unique: true
"label":
type: str
required: true
unique: true
"description":
type: str
required: true
unique: true
"url":
type: str
required: false
unique: true
"type":
type: str
required: true
unique: false
"dataset":
type: str
required: true
unique: false
"submitter":
type: str
required: true
unique: false
"compression":
type: str
required: false
unique: false
enum: ['', gzip]
"source":
type: str
required: false
unique: false
"species_code":
type: str
required: false
unique: false
"merges_into":
type: str
required: false
unique: false
"import":
type: bool
required: false
"entity_type":
type: str
required: false
unique: false
"aggregates":
type: str
required: false
unique: false
"status":
type: str
required: false
unique: false
"taxa":
type: seq
required: false
sequence:
- type: str
"exclude":
type: bool
required: false