From cfb00af28b02043bf21f0176624816b016d356e3 Mon Sep 17 00:00:00 2001 From: cooperl09 Date: Tue, 25 Sep 2018 11:17:24 -0700 Subject: [PATCH] Updating release files with corrected term ID for grain volume --- imports/chebi_import.owl | 2 +- imports/envo_import.owl | 2 +- imports/go_import.owl | 2 +- imports/ncbitaxon_import.owl | 2 +- imports/pato_import.owl | 2 +- imports/peco_import.owl | 2 +- imports/po_import.owl | 2 +- imports/ro_import.owl | 2 +- subsets/to-basic.obo | 6 ++++-- to.obo | 6 +++--- to.owl | 18 +++++------------- 11 files changed, 20 insertions(+), 26 deletions(-) diff --git a/imports/chebi_import.owl b/imports/chebi_import.owl index 3f8ad2a..7c02a1f 100644 --- a/imports/chebi_import.owl +++ b/imports/chebi_import.owl @@ -33732,5 +33732,5 @@ - + diff --git a/imports/envo_import.owl b/imports/envo_import.owl index 11c2c01..1bdf816 100644 --- a/imports/envo_import.owl +++ b/imports/envo_import.owl @@ -857,5 +857,5 @@ - + diff --git a/imports/go_import.owl b/imports/go_import.owl index d6ba376..2d599cf 100644 --- a/imports/go_import.owl +++ b/imports/go_import.owl @@ -5808,5 +5808,5 @@ - + diff --git a/imports/ncbitaxon_import.owl b/imports/ncbitaxon_import.owl index f4a45cf..19c7229 100644 --- a/imports/ncbitaxon_import.owl +++ b/imports/ncbitaxon_import.owl @@ -1034,5 +1034,5 @@ - + diff --git a/imports/pato_import.owl b/imports/pato_import.owl index 111b20e..7fb3be8 100644 --- a/imports/pato_import.owl +++ b/imports/pato_import.owl @@ -4344,5 +4344,5 @@ - + diff --git a/imports/peco_import.owl b/imports/peco_import.owl index 73f5fa5..f6f3ff7 100644 --- a/imports/peco_import.owl +++ b/imports/peco_import.owl @@ -17152,5 +17152,5 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - + diff --git a/imports/po_import.owl b/imports/po_import.owl index abffe47..f759ce3 100644 --- a/imports/po_import.owl +++ b/imports/po_import.owl @@ -12276,5 +12276,5 @@ - + diff --git a/imports/ro_import.owl b/imports/ro_import.owl index 70db3e6..69bca1e 100644 --- a/imports/ro_import.owl +++ b/imports/ro_import.owl @@ -2224,5 +2224,5 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - + diff --git a/subsets/to-basic.obo b/subsets/to-basic.obo index 358cfea..6e183ca 100644 --- a/subsets/to-basic.obo +++ b/subsets/to-basic.obo @@ -9040,7 +9040,7 @@ creation_date: 2017-12-07T10:36:57Z [Term] id: TO:0001069 name: cooking quality trait -comment: A processing quality trait (TO:0001068) that is the utility of a plant, plant structure (PO:0009011) or plant product for a food cooking process (FOODON:03450002). {xref="FOODON:03450002", xref="TO:cooperl"} +comment: A processing quality trait (TO:0001068) that is the utility of a plant, plant structure (PO:0009011) or plant product for a food cooking process (FOODON:03450002). {xref="TO:cooperl", xref="FOODON:03450002"} is_a: TO:0001068 ! processing quality trait property_value: http://purl.org/dc/elements/1.1/date 2017-12-08T00:41:11Z xsd:dateTime @@ -9313,7 +9313,7 @@ is_a: TO:0001077 ! berry fruit morphology trait [Term] id: TO:0001108 name: grain volume -def: "A caryopsis fruit morphology trait (TO:0001079) which is the volume of a grain (caryopsis fruit (PO:0030104)." [TO:cooperl] +def: "A caryopsis fruit morphology trait (TO:0001079) which is the volume of a grain (caryopsis fruit; PO:0030104)." [TO:cooperl] synonym: "GRVOL (exact)" EXACT [] synonym: "kernel volume (exact)" EXACT [] is_a: TO:0001079 ! caryopsis fruit morphology trait @@ -10452,6 +10452,7 @@ comment: Refer to volume (PATO:0000918): A 3-D extent quality inhering in a bear synonym: "DHULGRVOL (exact)" EXACT [] xref: PATO:0000918 is_a: TO:0000397 ! grain size +is_a: TO:0001108 ! grain volume is_a: TO:0002742 ! fruit volume [Term] @@ -10639,6 +10640,7 @@ name: hulled grain volume def: "A grain volume (TO:0001108) which is the volume of a grain with a caryopsis hull (PO:0006000)." [Gramene:pankaj_jaiswal] synonym: "HULGRVOL (exact)" EXACT [] synonym: "hulled caryopsis volume (related)" RELATED [] +is_a: TO:0001108 ! grain volume [Term] id: TO:0002766 diff --git a/to.obo b/to.obo index a2faccb..e57c599 100644 --- a/to.obo +++ b/to.obo @@ -22989,7 +22989,7 @@ is_a: TO:0001077 ! berry fruit morphology trait [Term] id: TO:0001108 name: grain volume -def: "A caryopsis fruit morphology trait (TO:0001079) which is the volume of a grain (caryopsis fruit (PO:0030104)." [TO:cooperl] +def: "A caryopsis fruit morphology trait (TO:0001079) which is the volume of a grain (caryopsis fruit; PO:0030104)." [TO:cooperl] synonym: "GRVOL (exact)" EXACT [] synonym: "kernel volume (exact)" EXACT [] is_a: TO:0001079 ! caryopsis fruit morphology trait @@ -24163,8 +24163,8 @@ def: "A grain volume (TO:0001108) which is the volume of a dehulled grain." [Gra comment: Refer to volume (PATO:0000918): A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies. synonym: "DHULGRVOL (exact)" EXACT [] xref: PATO:0000918 -is_a: PO:0001108 is_a: TO:0000397 ! grain size +is_a: TO:0001108 ! grain volume is_a: TO:0002742 ! fruit volume [Term] @@ -24354,7 +24354,7 @@ name: hulled grain volume def: "A grain volume (TO:0001108) which is the volume of a grain with a caryopsis hull (PO:0006000)." [Gramene:pankaj_jaiswal] synonym: "HULGRVOL (exact)" EXACT [] synonym: "hulled caryopsis volume (related)" RELATED [] -is_a: PO:0001108 +is_a: TO:0001108 ! grain volume [Term] id: TO:0002766 diff --git a/to.owl b/to.owl index eddc5d5..b9094bb 100644 --- a/to.owl +++ b/to.owl @@ -14929,14 +14929,6 @@ - - - - - - - - @@ -52786,7 +52778,7 @@ Refer to persistence (PATO:0000082): A rhythm quality inhering in a bearer by vi - A caryopsis fruit morphology trait (TO:0001079) which is the volume of a grain (caryopsis fruit (PO:0030104). + A caryopsis fruit morphology trait (TO:0001079) which is the volume of a grain (caryopsis fruit; PO:0030104). GRVOL (exact) kernel volume (exact) plant_trait_ontology @@ -52796,7 +52788,7 @@ Refer to persistence (PATO:0000082): A rhythm quality inhering in a bearer by vi - A caryopsis fruit morphology trait (TO:0001079) which is the volume of a grain (caryopsis fruit (PO:0030104). + A caryopsis fruit morphology trait (TO:0001079) which is the volume of a grain (caryopsis fruit; PO:0030104). TO:cooperl @@ -55856,8 +55848,8 @@ Refer to width PATO:0000921: A 1-D extent quality which is equal to the distance - + A grain volume (TO:0001108) which is the volume of a dehulled grain. PATO:0000918 @@ -56335,7 +56327,7 @@ Refer to width PATO:0000921: A 1-D extent quality which is equal to the distance - + A grain volume (TO:0001108) which is the volume of a grain with a caryopsis hull (PO:0006000). HULGRVOL (exact) plant_trait_ontology @@ -63227,5 +63219,5 @@ also holes etc). - +