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Voxel mask should also be appropriate for even axial dimension #103

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gschlafly opened this issue Jun 27, 2024 · 0 comments
Open
1 task

Voxel mask should also be appropriate for even axial dimension #103

gschlafly opened this issue Jun 27, 2024 · 0 comments
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bug Something isn't working

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@gschlafly
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Description

Mask should still include at least one voxel when filtering the voxels from a retardance image.

Voxel index data for volume shape [4, 9, 9]

5x5 MLA
image
1x1 MLA
image
image

Files

https://github.com/PolarizedLightFieldMicroscopy/GeoBirT/blob/07fe4b535418831db67af5eb7ad6483c1eefd80d/src/VolumeRaytraceLFM/utils/mask_utils.py#L126-L188

To Reproduce

Reconstruct from images of a single birefringence voxel over an even number of voxels in the axial dimension.

Tasks

  • Visualize the 3D positions of the voxels that contribute to the nonzero retardance pixels.
@gschlafly gschlafly added the bug Something isn't working label Jun 27, 2024
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